Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86792 * 119.99889 * 2 1 4 4 H 1.48506 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47142 * 299.99307 * 3 2 1 6 6 H 1.48498 * 109.47657 * 59.99766 * 3 2 1 7 7 C 1.38801 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99380 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00068 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00025 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00217 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.50096 * 324.91941 * 14 13 11 16 16 C 1.53121 * 109.50653 * 204.80070 * 14 13 11 17 17 C 1.53112 * 109.16197 * 182.40312 * 16 14 13 18 18 C 1.53034 * 109.28005 * 57.65481 * 17 16 14 19 19 N 1.46847 * 109.52334 * 300.82248 * 18 17 16 20 20 C 1.38539 * 111.00165 * 185.83859 * 19 18 17 21 21 N 1.32452 * 119.18702 * 235.51537 * 20 19 18 22 22 C 1.32303 * 120.76262 * 179.75846 * 21 20 19 23 23 C 1.38780 * 119.16810 * 0.50455 * 22 21 20 24 24 F 1.35102 * 120.74280 * 179.77046 * 23 22 21 25 25 C 1.38777 * 118.50944 * 359.75450 * 23 22 21 26 26 N 1.32300 * 119.17003 * 359.97438 * 25 23 22 27 27 C 1.46845 * 111.19831 * 61.74102 * 19 18 17 28 28 H 0.97001 * 119.99781 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47013 * 300.00500 * 10 9 7 30 30 H 1.09004 * 109.47116 * 59.99987 * 10 9 7 31 31 H 0.97005 * 120.00406 * 359.97438 * 13 11 10 32 32 H 1.08997 * 109.52029 * 302.31219 * 16 14 13 33 33 H 1.08997 * 109.51990 * 62.49650 * 16 14 13 34 34 H 1.09007 * 109.50745 * 297.71372 * 17 16 14 35 35 H 1.09001 * 109.53472 * 177.61602 * 17 16 14 36 36 H 1.09001 * 109.46642 * 180.80339 * 18 17 16 37 37 H 1.09002 * 109.45500 * 60.82705 * 18 17 16 38 38 H 1.08006 * 120.41641 * 180.23782 * 22 21 20 39 39 H 1.08001 * 120.41573 * 180.02562 * 25 23 22 40 40 H 1.09003 * 109.46361 * 178.24504 * 27 19 18 41 41 H 1.08990 * 109.46451 * 58.27524 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3464 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9873 -5.3027 0.0036 12 8 0.7910 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0049 14 6 2.3304 -7.7151 0.0061 15 1 1.4151 -7.7604 0.5963 16 6 3.3779 -8.6528 0.6128 17 6 2.8578 -10.0917 0.5553 18 6 2.5460 -10.4586 -0.8973 19 7 1.5388 -9.5334 -1.4319 20 6 1.1374 -9.9158 -2.7014 21 7 1.2342 -9.0488 -3.6981 22 6 0.8643 -9.3826 -4.9237 23 6 0.3607 -10.6549 -5.1554 24 9 -0.0308 -11.0278 -6.3935 25 6 0.2685 -11.5355 -4.0868 26 7 0.6616 -11.1378 -2.8877 27 6 2.0340 -8.1509 -1.4307 28 1 -0.4850 0.8401 -0.0004 29 1 3.1245 -3.7321 -0.8872 30 1 3.1244 -3.7306 0.8928 31 1 3.8009 -6.1836 0.0051 32 1 4.3057 -8.5778 0.0458 33 1 3.5602 -8.3725 1.6502 34 1 1.9509 -10.1752 1.1544 35 1 3.6164 -10.7693 0.9471 36 1 2.1620 -11.4778 -0.9401 37 1 3.4562 -10.3882 -1.4929 38 1 0.9492 -8.6724 -5.7330 39 1 -0.1185 -12.5333 -4.2323 40 1 1.2779 -7.4940 -1.8608 41 1 2.9464 -8.0915 -2.0238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096169358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = -13.500929 kcal Electronic energy + Delta-G solvation = -26244.466645 eV Core-core repulsion = 22200.838070 eV Total energy + Delta-G solvation = -4043.628575 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -49.34687 -41.68411 -39.82285 -38.38212 -35.07293 -34.36854 -33.19264 -32.42281 -30.64733 -30.37086 -28.32455 -25.64063 -25.50242 -25.32669 -23.16703 -22.84519 -20.47305 -20.22238 -18.58856 -18.39496 -17.85000 -17.78307 -16.49131 -16.31745 -16.01404 -15.59586 -15.33704 -15.19856 -14.80338 -14.71927 -14.63651 -14.29439 -13.93398 -13.78548 -13.56616 -13.49545 -13.10705 -12.92573 -12.53867 -12.23163 -12.10291 -11.72508 -11.42452 -11.35780 -11.11536 -11.06657 -11.01347 -10.87994 -10.73631 -10.32549 -9.80124 -9.59286 -9.39849 -9.07785 -8.97809 -8.67027 -8.22315 -6.49269 -6.21401 -3.91698 0.33240 0.52100 2.57358 3.04484 3.08209 3.18593 3.21721 3.28753 3.33301 3.46543 3.61116 3.72587 4.16484 4.20582 4.30290 4.37027 4.45924 4.50095 4.59016 4.85539 4.98000 5.12305 5.13754 5.14304 5.19830 5.27997 5.31827 5.47883 5.61595 5.63975 5.74475 5.75257 5.88800 5.93859 6.04753 6.14124 6.21107 6.26928 6.62651 6.76037 7.60172 7.61383 7.68814 8.35747 8.60454 9.24048 10.86056 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.002342 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.727737 B =11954.718740 C =13414.019771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.512 6.512 13 N -0.733 5.733 14 C 0.148 3.852 15 H 0.099 0.901 16 C -0.132 4.132 17 C -0.114 4.114 18 C 0.063 3.937 19 N -0.451 5.451 20 C 0.490 3.510 21 N -0.522 5.522 22 C 0.158 3.842 23 C -0.045 4.045 24 F -0.123 7.123 25 C 0.154 3.846 26 N -0.507 5.507 27 C 0.058 3.942 28 H 0.268 0.732 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.068 0.932 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.082 0.918 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.182 0.818 39 H 0.182 0.818 40 H 0.099 0.901 41 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.381 -25.809 -5.854 27.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.385 6.385 13 N -0.387 5.387 14 C 0.042 3.958 15 H 0.117 0.883 16 C -0.170 4.170 17 C -0.152 4.152 18 C -0.062 4.062 19 N -0.170 5.170 20 C 0.135 3.865 21 N -0.240 5.240 22 C -0.011 4.011 23 C -0.071 4.071 24 F -0.102 7.102 25 C -0.015 4.015 26 N -0.224 5.224 27 C -0.070 4.070 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.100 0.900 35 H 0.100 0.900 36 H 0.115 0.885 37 H 0.065 0.935 38 H 0.198 0.802 39 H 0.199 0.801 40 H 0.118 0.882 41 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.116 -25.744 -4.539 26.847 hybrid contribution 2.483 1.161 -1.654 3.201 sum 8.599 -24.583 -6.193 26.770 Atomic orbital electron populations 1.70034 1.05943 1.27332 1.46961 1.25001 0.95032 0.99046 0.94579 0.86115 0.79566 0.81897 0.77893 1.19633 1.20578 1.20577 1.22906 0.94927 0.91652 1.58787 0.90889 1.85425 1.04881 0.96322 1.96704 1.23531 1.06596 0.95313 1.04940 1.20356 0.86585 0.86282 0.74888 1.90722 1.15293 1.85475 1.47027 1.45986 1.09950 1.04866 1.77929 1.20841 0.98634 0.81242 0.95068 0.88303 1.21931 0.98181 0.94649 1.02210 1.21578 1.02440 0.96007 0.95179 1.22296 0.91656 0.96265 0.96010 1.58270 1.39099 1.05460 1.14212 1.21110 0.91218 0.85374 0.88819 1.68504 1.19923 1.36258 0.99346 1.23340 0.89964 0.93092 0.94747 1.19330 1.07866 0.97216 0.82686 1.91542 1.88816 1.91554 1.38310 1.23277 0.92394 0.99909 0.85941 1.68060 1.14025 1.17131 1.23197 1.22546 1.00929 0.85780 0.97728 0.92245 0.89205 0.89188 0.76707 0.91360 0.90269 0.90041 0.89954 0.88474 0.93525 0.80151 0.80121 0.88236 0.92645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.21 13.22 55.49 0.73 -25.47 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 4 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.19 9.50 30.94 0.29 -14.89 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.56 16 9 S -0.06 -1.62 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 11 C 0.53 9.74 7.81 -10.99 -0.09 9.65 16 12 O -0.51 -11.54 15.53 5.56 0.09 -11.45 16 13 N -0.73 -9.40 5.08 -53.73 -0.27 -9.67 16 14 C 0.15 1.73 2.62 -67.85 -0.18 1.55 16 15 H 0.10 1.41 7.58 -51.93 -0.39 1.02 16 16 C -0.13 -1.02 5.47 -26.61 -0.15 -1.17 16 17 C -0.11 -0.79 6.09 -26.66 -0.16 -0.95 16 18 C 0.06 0.53 5.33 -3.84 -0.02 0.51 16 19 N -0.45 -5.22 4.72 -175.41 -0.83 -6.05 16 20 C 0.49 5.90 7.18 -322.72 -2.32 3.59 16 21 N -0.52 -6.31 8.67 -13.86 -0.12 -6.43 16 22 C 0.16 1.49 11.29 -17.15 -0.19 1.30 16 23 C -0.05 -0.39 7.38 -39.18 -0.29 -0.68 16 24 F -0.12 -1.03 17.30 2.25 0.04 -1.00 16 25 C 0.15 1.27 11.29 -17.15 -0.19 1.08 16 26 N -0.51 -5.43 9.65 -13.87 -0.13 -5.57 16 27 C 0.06 0.72 4.21 -3.83 -0.02 0.71 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 30 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 31 H 0.40 3.86 8.60 -40.82 -0.35 3.51 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.10 0.79 7.55 -51.93 -0.39 0.40 16 37 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.18 1.22 8.06 -52.48 -0.42 0.80 16 39 H 0.18 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.10 1.59 7.68 -51.93 -0.40 1.19 16 41 H 0.06 0.65 8.10 -51.93 -0.42 0.23 16 LS Contribution 364.18 15.07 5.49 5.49 Total: -1.00 -35.73 364.18 -10.73 -46.46 By element: Atomic # 1 Polarization: 6.58 SS G_CDS: -5.31 Total: 1.28 kcal Atomic # 6 Polarization: 3.04 SS G_CDS: -3.18 Total: -0.14 kcal Atomic # 7 Polarization: -52.56 SS G_CDS: -0.62 Total: -53.18 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 9 Polarization: -1.03 SS G_CDS: 0.04 Total: -1.00 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.73 -10.73 -46.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096169358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.963 kcal (2) G-P(sol) polarization free energy of solvation -35.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.729 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds