Wall clock time and date at job start Sat Apr 11 2020 05:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31640 * 1 3 3 Si 1.86792 * 119.99889 * 2 1 4 4 H 1.48506 * 109.47169 * 179.97438 * 3 2 1 5 5 H 1.48505 * 109.47142 * 299.99307 * 3 2 1 6 6 H 1.48498 * 109.47657 * 59.99766 * 3 2 1 7 7 C 1.38801 * 119.99650 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99380 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00163 * 359.97438 * 7 2 1 10 10 C 1.81000 * 100.00068 * 180.02562 * 9 7 2 11 11 C 1.50698 * 109.47349 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00025 * 359.97438 * 11 10 9 13 13 N 1.34776 * 120.00035 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00217 * 179.97438 * 13 11 10 15 15 H 1.09000 * 109.50096 * 324.91941 * 14 13 11 16 16 C 1.53121 * 109.50653 * 204.80070 * 14 13 11 17 17 C 1.53112 * 109.16197 * 182.40312 * 16 14 13 18 18 C 1.53034 * 109.28005 * 57.65481 * 17 16 14 19 19 N 1.46847 * 109.52334 * 300.82248 * 18 17 16 20 20 C 1.38539 * 111.00165 * 185.83859 * 19 18 17 21 21 N 1.32452 * 119.18702 * 235.51537 * 20 19 18 22 22 C 1.32303 * 120.76262 * 179.75846 * 21 20 19 23 23 C 1.38780 * 119.16810 * 0.50455 * 22 21 20 24 24 F 1.35102 * 120.74280 * 179.77046 * 23 22 21 25 25 C 1.38777 * 118.50944 * 359.75450 * 23 22 21 26 26 N 1.32300 * 119.17003 * 359.97438 * 25 23 22 27 27 C 1.46845 * 111.19831 * 61.74102 * 19 18 17 28 28 H 0.97001 * 119.99781 * 0.02562 * 1 2 3 29 29 H 1.09001 * 109.47013 * 300.00500 * 10 9 7 30 30 H 1.09004 * 109.47116 * 59.99987 * 10 9 7 31 31 H 0.97005 * 120.00406 * 359.97438 * 13 11 10 32 32 H 1.08997 * 109.52029 * 302.31219 * 16 14 13 33 33 H 1.08997 * 109.51990 * 62.49650 * 16 14 13 34 34 H 1.09007 * 109.50745 * 297.71372 * 17 16 14 35 35 H 1.09001 * 109.53472 * 177.61602 * 17 16 14 36 36 H 1.09001 * 109.46642 * 180.80339 * 18 17 16 37 37 H 1.09002 * 109.45500 * 60.82705 * 18 17 16 38 38 H 1.08006 * 120.41641 * 180.23782 * 22 21 20 39 39 H 1.08001 * 120.41573 * 180.02562 * 25 23 22 40 40 H 1.09003 * 109.46361 * 178.24504 * 27 19 18 41 41 H 1.08990 * 109.46451 * 58.27524 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7104 1.3464 0.0006 5 1 1.8917 2.3963 -1.2126 6 1 1.8916 2.3965 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0019 10 6 2.5158 -3.8915 0.0029 11 6 1.9873 -5.3027 0.0036 12 8 0.7910 -5.5023 0.0038 13 7 2.8441 -6.3431 0.0049 14 6 2.3304 -7.7151 0.0061 15 1 1.4151 -7.7604 0.5963 16 6 3.3779 -8.6528 0.6128 17 6 2.8578 -10.0917 0.5553 18 6 2.5460 -10.4586 -0.8973 19 7 1.5388 -9.5334 -1.4319 20 6 1.1374 -9.9158 -2.7014 21 7 1.2342 -9.0488 -3.6981 22 6 0.8643 -9.3826 -4.9237 23 6 0.3607 -10.6549 -5.1554 24 9 -0.0308 -11.0278 -6.3935 25 6 0.2685 -11.5355 -4.0868 26 7 0.6616 -11.1378 -2.8877 27 6 2.0340 -8.1509 -1.4307 28 1 -0.4850 0.8401 -0.0004 29 1 3.1245 -3.7321 -0.8872 30 1 3.1244 -3.7306 0.8928 31 1 3.8009 -6.1836 0.0051 32 1 4.3057 -8.5778 0.0458 33 1 3.5602 -8.3725 1.6502 34 1 1.9509 -10.1752 1.1544 35 1 3.6164 -10.7693 0.9471 36 1 2.1620 -11.4778 -0.9401 37 1 3.4562 -10.3882 -1.4929 38 1 0.9492 -8.6724 -5.7330 39 1 -0.1185 -12.5333 -4.2323 40 1 1.2779 -7.4940 -1.8608 41 1 2.9464 -8.0915 -2.0238 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096169358.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:45 Heat of formation + Delta-G solvation = -38.103578 kcal Electronic energy + Delta-G solvation = -26245.533496 eV Core-core repulsion = 22200.838070 eV Total energy + Delta-G solvation = -4044.695426 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.03926 -42.46734 -40.97348 -39.47865 -36.15097 -35.13370 -34.58115 -34.08917 -31.82101 -31.18681 -29.60958 -27.65630 -26.38818 -26.11430 -24.00496 -23.66574 -21.69011 -21.19474 -19.78935 -19.35717 -19.18431 -18.55337 -17.80596 -17.23549 -17.11733 -16.87695 -16.56894 -16.30838 -16.07192 -15.83951 -15.67060 -15.33340 -15.08309 -14.77916 -14.60299 -14.44008 -14.26404 -14.16357 -13.67564 -13.55809 -13.15512 -12.92386 -12.90669 -12.72724 -12.58834 -12.22490 -12.02267 -11.83958 -11.73463 -11.64206 -11.15607 -11.09126 -10.93393 -10.36792 -10.26031 -10.19079 -9.45610 -8.66314 -8.34450 -6.12350 -0.41871 -0.19026 1.26390 1.41664 1.46152 1.56271 1.59794 1.85845 2.26949 2.32231 2.43006 2.75998 2.91467 2.99802 3.32226 3.46984 3.60406 3.64687 3.71224 3.75164 3.94142 3.97643 4.11166 4.16500 4.32475 4.46789 4.49721 4.51779 4.57865 4.60614 4.74431 4.86733 5.02842 5.09654 5.18208 5.27675 5.36180 5.42558 5.48520 5.57876 5.98456 6.20479 6.51198 6.83503 7.06957 7.25479 8.75046 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.014559 B = 0.002342 C = 0.002087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1922.727737 B =11954.718740 C =13414.019771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.011 3.989 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.543 4.543 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.128 4.128 11 C 0.535 3.465 12 O -0.563 6.563 13 N -0.705 5.705 14 C 0.149 3.851 15 H 0.068 0.932 16 C -0.121 4.121 17 C -0.108 4.108 18 C 0.063 3.937 19 N -0.465 5.465 20 C 0.473 3.527 21 N -0.552 5.552 22 C 0.148 3.852 23 C -0.040 4.040 24 F -0.120 7.120 25 C 0.159 3.841 26 N -0.518 5.518 27 C 0.072 3.928 28 H 0.271 0.729 29 H 0.110 0.890 30 H 0.113 0.887 31 H 0.419 0.581 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.100 0.900 37 H 0.056 0.944 38 H 0.201 0.799 39 H 0.217 0.783 40 H 0.055 0.945 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.347 -27.112 -5.902 29.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.179 1.179 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.691 4.691 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.279 4.279 11 C 0.321 3.679 12 O -0.440 6.440 13 N -0.360 5.360 14 C 0.043 3.957 15 H 0.086 0.914 16 C -0.159 4.159 17 C -0.146 4.146 18 C -0.062 4.062 19 N -0.184 5.184 20 C 0.117 3.883 21 N -0.271 5.271 22 C -0.019 4.019 23 C -0.065 4.065 24 F -0.099 7.099 25 C -0.010 4.010 26 N -0.236 5.236 27 C -0.056 4.056 28 H 0.080 0.920 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.257 0.743 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.089 0.911 35 H 0.133 0.867 36 H 0.118 0.882 37 H 0.074 0.926 38 H 0.217 0.783 39 H 0.234 0.766 40 H 0.073 0.927 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 9.143 -27.094 -4.597 28.962 hybrid contribution 1.546 1.390 -1.713 2.694 sum 10.689 -25.703 -6.310 28.543 Atomic orbital electron populations 1.70203 1.08015 1.28509 1.48174 1.26155 0.95975 1.03401 0.93810 0.84888 0.78643 0.76272 0.78026 1.17905 1.20020 1.19959 1.23233 0.95351 0.91905 1.58606 0.89809 1.85639 1.10723 0.99376 1.97044 1.23365 1.03480 0.94146 1.06929 1.20129 0.86272 0.86762 0.74745 1.90713 1.17539 1.86026 1.49764 1.45695 1.10360 1.04342 1.75556 1.20948 0.99112 0.80975 0.94659 0.91352 1.21917 0.97388 0.93823 1.02784 1.21605 1.02976 0.95951 0.94052 1.22434 0.91214 0.95694 0.96848 1.58337 1.40221 1.05352 1.14539 1.21297 0.91909 0.86014 0.89043 1.68495 1.21401 1.36923 1.00299 1.23707 0.89648 0.94072 0.94512 1.19294 1.07395 0.96958 0.82898 1.91554 1.88717 1.91467 1.38132 1.23864 0.91028 1.01112 0.84969 1.68119 1.14598 1.16585 1.24272 1.22242 0.99679 0.86042 0.97667 0.92045 0.87190 0.86899 0.74296 0.89068 0.89077 0.91083 0.86669 0.88177 0.92575 0.78266 0.76607 0.92656 0.91833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.52 13.22 21.65 0.29 -56.23 16 2 C 0.01 0.63 5.49 84.86 0.47 1.10 16 3 Si 1.00 43.73 29.55 68.60 2.03 45.75 16 4 H -0.26 -10.37 7.11 99.48 0.71 -9.67 16 5 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.54 -31.06 9.50 67.95 0.65 -30.41 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.67 20.57 -56.49 -1.16 -9.84 16 10 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 11 C 0.53 19.73 7.81 87.66 0.68 20.41 16 12 O -0.56 -26.64 15.53 -3.04 -0.05 -26.68 16 13 N -0.71 -17.29 5.08 -442.29 -2.25 -19.54 16 14 C 0.15 3.39 2.62 45.04 0.12 3.51 16 15 H 0.07 2.03 7.58 -2.39 -0.02 2.01 16 16 C -0.12 -1.54 5.47 30.67 0.17 -1.37 16 17 C -0.11 -1.21 6.09 30.64 0.19 -1.02 16 18 C 0.06 0.95 5.33 86.32 0.46 1.41 16 19 N -0.46 -10.75 4.72 -708.88 -3.34 -14.10 16 20 C 0.47 11.44 7.18 261.46 1.88 13.31 16 21 N -0.55 -13.63 8.67 -197.78 -1.72 -15.35 16 22 C 0.15 2.79 11.29 84.75 0.96 3.74 16 23 C -0.04 -0.64 7.38 22.53 0.17 -0.47 16 24 F -0.12 -1.84 17.30 44.97 0.78 -1.06 16 25 C 0.16 2.39 11.29 84.75 0.96 3.35 16 26 N -0.52 -10.73 9.65 -197.78 -1.91 -12.64 16 27 C 0.07 1.82 4.21 86.33 0.36 2.18 16 28 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 29 H 0.11 3.88 8.14 -2.39 -0.02 3.86 16 30 H 0.11 3.92 8.14 -2.39 -0.02 3.90 16 31 H 0.42 6.94 8.60 -92.70 -0.80 6.15 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.12 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.10 1.46 7.55 -2.39 -0.02 1.45 16 37 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 38 H 0.20 2.66 8.06 -2.91 -0.02 2.63 16 39 H 0.22 1.49 8.06 -2.91 -0.02 1.46 16 40 H 0.05 1.89 7.68 -2.39 -0.02 1.87 16 41 H 0.06 1.45 8.10 -2.39 -0.02 1.43 16 Total: -1.00 -82.54 364.18 0.43 -82.11 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: 0.27 Total: 16.41 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: 7.49 Total: 11.15 kcal Atomic # 7 Polarization: -108.92 SS G_CDS: -8.93 Total: -117.85 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.05 Total: -26.68 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 0.78 Total: -1.06 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.75 kcal Atomic # 16 Polarization: -8.67 SS G_CDS: -1.16 Total: -9.84 kcal Total: -82.54 0.43 -82.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096169358.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.007 kcal (2) G-P(sol) polarization free energy of solvation -82.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.427 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds