Wall clock time and date at job start Sat Apr 11 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86801 * 119.99496 * 2 1 4 4 H 1.48500 * 109.47141 * 269.99709 * 3 2 1 5 5 H 1.48496 * 109.47465 * 29.99946 * 3 2 1 6 6 H 1.48499 * 109.47128 * 150.00039 * 3 2 1 7 7 C 1.38796 * 120.00423 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99682 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00116 * 180.02562 * 7 2 1 10 10 C 1.81005 * 99.99915 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47077 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99956 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99978 * 180.02562 * 11 10 9 14 14 C 1.46498 * 119.99990 * 180.02562 * 13 11 10 15 15 H 1.09001 * 109.50694 * 34.91904 * 14 13 11 16 16 C 1.53123 * 109.50452 * 154.99573 * 14 13 11 17 17 C 1.53120 * 109.21163 * 177.60151 * 16 14 13 18 18 C 1.53048 * 109.27450 * 302.43753 * 17 16 14 19 19 N 1.46848 * 109.57298 * 59.08726 * 18 17 16 20 20 C 1.38538 * 110.99876 * 174.18605 * 19 18 17 21 21 N 1.32458 * 119.18304 * 123.94027 * 20 19 18 22 22 C 1.32300 * 120.76353 * 179.76461 * 21 20 19 23 23 C 1.38784 * 119.16439 * 0.50355 * 22 21 20 24 24 F 1.35103 * 120.74312 * 179.77779 * 23 22 21 25 25 C 1.38781 * 118.51101 * 359.74715 * 23 22 21 26 26 N 1.32297 * 119.17058 * 0.02562 * 25 23 22 27 27 C 1.46842 * 111.19688 * 298.28804 * 19 18 17 28 28 H 0.97000 * 120.00363 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.46907 * 59.99982 * 10 9 7 30 30 H 1.09006 * 109.46755 * 299.99708 * 10 9 7 31 31 H 0.97001 * 119.99947 * 359.97438 * 13 11 10 32 32 H 1.09002 * 109.52319 * 297.53944 * 16 14 13 33 33 H 1.08995 * 109.52318 * 57.66625 * 16 14 13 34 34 H 1.09000 * 109.50719 * 62.32149 * 17 16 14 35 35 H 1.09003 * 109.50116 * 182.43702 * 17 16 14 36 36 H 1.08999 * 109.41208 * 299.06816 * 18 17 16 37 37 H 1.09000 * 109.46050 * 179.13236 * 18 17 16 38 38 H 1.07995 * 120.41759 * 180.27607 * 22 21 20 39 39 H 1.08007 * 120.41251 * 180.02562 * 25 23 22 40 40 H 1.09001 * 109.46203 * 301.72398 * 27 19 18 41 41 H 1.09006 * 109.45199 * 181.75359 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5477 1.4404 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2019 0.0012 10 6 4.0867 -2.9844 0.0009 11 6 5.5731 -3.2323 0.0021 12 8 6.3441 -2.2960 0.0025 13 7 6.0458 -4.4944 0.0016 14 6 7.4908 -4.7354 0.0033 15 1 7.9877 -3.9648 0.5928 16 6 7.7791 -6.1103 0.6125 17 6 9.2852 -6.3806 0.5563 18 6 9.7600 -6.2948 -0.8962 19 7 9.4623 -4.9608 -1.4331 20 6 9.9951 -4.8064 -2.7026 21 7 9.1944 -4.4692 -3.7024 22 6 9.6707 -4.3089 -4.9263 23 6 11.0245 -4.5088 -5.1567 24 9 11.5441 -4.3582 -6.3947 25 6 11.8329 -4.8664 -4.0867 26 7 11.2914 -5.0052 -2.8877 27 6 8.0174 -4.6989 -1.4332 28 1 -0.4851 0.8400 -0.0004 29 1 3.6441 -3.4312 -0.8893 30 1 3.6434 -3.4316 0.8907 31 1 5.4292 -5.2432 0.0009 32 1 7.4446 -6.1265 1.6498 33 1 7.2501 -6.8774 0.0471 34 1 9.8111 -5.6366 1.1547 35 1 9.4912 -7.3762 0.9493 36 1 9.2447 -7.0491 -1.4909 37 1 10.8348 -6.4715 -0.9379 38 1 9.0135 -4.0295 -5.7365 39 1 12.8908 -5.0292 -4.2312 40 1 7.5103 -5.4606 -2.0255 41 1 7.8267 -3.7164 -1.8650 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096169359.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:47 Heat of formation + Delta-G solvation = -37.566089 kcal Electronic energy + Delta-G solvation = -26307.032609 eV Core-core repulsion = 22262.360490 eV Total energy + Delta-G solvation = -4044.672118 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.04246 -42.47038 -41.00477 -39.49671 -36.16943 -35.13590 -34.67364 -34.10202 -31.86693 -31.19131 -29.65054 -27.84644 -26.39169 -26.11944 -24.02219 -23.67514 -21.72393 -21.21386 -19.83909 -19.36071 -19.18717 -18.55618 -17.86881 -17.26333 -17.19478 -17.00105 -16.60740 -16.31255 -16.05758 -15.77383 -15.68619 -15.34512 -15.09255 -14.91256 -14.73952 -14.59543 -14.26908 -14.18145 -13.72129 -13.61436 -13.34820 -13.03106 -12.91805 -12.75307 -12.63719 -12.22699 -12.02673 -11.88682 -11.80042 -11.68608 -11.17465 -11.08961 -10.98765 -10.52690 -10.37384 -10.21416 -9.46374 -8.99440 -8.51740 -6.22084 -0.42217 -0.19456 0.98262 1.30678 1.45620 1.51224 1.55805 1.84540 2.23731 2.28753 2.42175 2.72235 2.75751 2.86569 2.91417 3.45956 3.59664 3.64050 3.69981 3.74698 3.89027 3.94646 4.08804 4.16510 4.25711 4.46460 4.47809 4.49670 4.57252 4.60358 4.73858 4.86371 5.02667 5.09279 5.17701 5.26417 5.35505 5.48013 5.56637 5.70898 5.97836 6.11648 6.46756 6.83132 6.93793 7.19706 8.60606 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013717 B = 0.002501 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.722392 B =11191.027925 C =12701.692098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.913 3.087 4 H -0.264 1.264 5 H -0.259 1.259 6 H -0.238 1.238 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.179 6.179 10 C -0.110 4.110 11 C 0.536 3.464 12 O -0.560 6.560 13 N -0.705 5.705 14 C 0.149 3.851 15 H 0.072 0.928 16 C -0.122 4.122 17 C -0.107 4.107 18 C 0.063 3.937 19 N -0.464 5.464 20 C 0.473 3.527 21 N -0.551 5.551 22 C 0.149 3.851 23 C -0.040 4.040 24 F -0.120 7.120 25 C 0.159 3.841 26 N -0.518 5.518 27 C 0.072 3.928 28 H 0.277 0.723 29 H 0.114 0.886 30 H 0.117 0.883 31 H 0.420 0.580 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.072 0.928 35 H 0.114 0.886 36 H 0.055 0.945 37 H 0.099 0.901 38 H 0.201 0.799 39 H 0.217 0.783 40 H 0.063 0.937 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.712 -19.857 -5.796 32.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.160 4.160 3 Si 0.735 3.265 4 H -0.188 1.188 5 H -0.183 1.183 6 H -0.162 1.162 7 C -0.674 4.674 8 H 0.082 0.918 9 S 0.047 5.953 10 C -0.261 4.261 11 C 0.322 3.678 12 O -0.438 6.438 13 N -0.359 5.359 14 C 0.044 3.956 15 H 0.090 0.910 16 C -0.160 4.160 17 C -0.146 4.146 18 C -0.062 4.062 19 N -0.184 5.184 20 C 0.117 3.883 21 N -0.270 5.270 22 C -0.019 4.019 23 C -0.065 4.065 24 F -0.099 7.099 25 C -0.010 4.010 26 N -0.236 5.236 27 C -0.057 4.057 28 H 0.086 0.914 29 H 0.132 0.868 30 H 0.135 0.865 31 H 0.257 0.743 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.090 0.910 35 H 0.132 0.868 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.217 0.783 39 H 0.233 0.767 40 H 0.081 0.919 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 25.617 -18.033 -4.491 31.647 hybrid contribution -1.453 -0.417 -1.766 2.325 sum 24.163 -18.450 -6.257 31.039 Atomic orbital electron populations 1.70010 1.07242 1.28990 1.49240 1.25541 0.95260 1.02184 0.92982 0.85887 0.80695 0.79769 0.80149 1.18828 1.18319 1.16151 1.22456 0.90188 0.96704 1.58070 0.91785 1.84775 1.06488 1.06403 1.97586 1.23268 0.95714 0.99490 1.07616 1.20018 0.89435 0.83440 0.74895 1.90712 1.59321 1.43875 1.49846 1.45683 1.07865 1.06968 1.75346 1.20953 0.80048 0.99920 0.94710 0.91014 1.21924 0.97694 0.93618 1.02800 1.21604 0.94367 1.04547 0.94038 1.22430 1.03239 0.83709 0.96844 1.58339 1.14825 1.30737 1.14485 1.21291 0.86798 0.91125 0.89040 1.68503 1.39568 1.18719 1.00242 1.23703 0.92927 0.90696 0.94598 1.19306 0.94818 1.09538 0.82870 1.91555 1.86637 1.93546 1.38157 1.23862 1.02507 0.89648 0.84976 1.68117 1.11312 1.19791 1.24343 1.22250 0.83835 1.01976 0.97630 0.91377 0.86796 0.86490 0.74251 0.89058 0.89194 0.90974 0.86787 0.92685 0.88219 0.78266 0.76653 0.91915 0.92410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.93 13.97 21.65 0.30 -55.63 16 2 C 0.05 2.69 5.50 84.86 0.47 3.16 16 3 Si 0.91 45.40 27.74 68.60 1.90 47.30 16 4 H -0.26 -12.83 7.11 99.48 0.71 -12.12 16 5 H -0.26 -12.06 7.11 99.48 0.71 -11.35 16 6 H -0.24 -11.83 6.74 99.48 0.67 -11.16 16 7 C -0.53 -30.64 10.04 67.95 0.68 -29.95 16 8 H 0.06 3.91 8.03 -2.91 -0.02 3.88 16 9 S -0.18 -9.08 18.55 -56.49 -1.05 -10.13 16 10 C -0.11 -4.07 6.16 71.24 0.44 -3.63 16 11 C 0.54 18.21 7.82 87.66 0.69 18.90 16 12 O -0.56 -24.22 15.52 -3.04 -0.05 -24.27 16 13 N -0.70 -15.91 5.08 -442.29 -2.25 -18.16 16 14 C 0.15 3.13 2.62 45.05 0.12 3.25 16 15 H 0.07 1.96 7.58 -2.39 -0.02 1.94 16 16 C -0.12 -1.42 5.47 30.68 0.17 -1.25 16 17 C -0.11 -1.10 6.10 30.65 0.19 -0.91 16 18 C 0.06 0.88 5.33 86.33 0.46 1.34 16 19 N -0.46 -10.08 4.72 -708.84 -3.35 -13.42 16 20 C 0.47 10.83 7.18 261.45 1.88 12.70 16 21 N -0.55 -12.85 8.68 -197.78 -1.72 -14.57 16 22 C 0.15 2.62 11.29 84.75 0.96 3.58 16 23 C -0.04 -0.60 7.38 22.53 0.17 -0.44 16 24 F -0.12 -1.74 17.30 44.97 0.78 -0.97 16 25 C 0.16 2.24 11.29 84.75 0.96 3.20 16 26 N -0.52 -10.17 9.65 -197.78 -1.91 -12.08 16 27 C 0.07 1.68 4.21 86.33 0.36 2.04 16 28 H 0.28 15.62 8.31 -92.71 -0.77 14.85 16 29 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 30 H 0.12 3.90 8.14 -2.39 -0.02 3.88 16 31 H 0.42 6.38 8.60 -92.71 -0.80 5.58 16 32 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 36 H 0.05 0.69 8.14 -2.39 -0.02 0.68 16 37 H 0.10 1.37 7.55 -2.39 -0.02 1.36 16 38 H 0.20 2.44 8.06 -2.91 -0.02 2.41 16 39 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 40 H 0.06 1.35 8.10 -2.39 -0.02 1.33 16 41 H 0.06 1.84 7.69 -2.38 -0.02 1.82 16 Total: -1.00 -79.13 361.50 0.43 -78.70 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: 0.24 Total: 11.23 kcal Atomic # 6 Polarization: 4.47 SS G_CDS: 7.53 Total: 11.99 kcal Atomic # 7 Polarization: -104.94 SS G_CDS: -8.91 Total: -113.86 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.05 Total: -24.27 kcal Atomic # 9 Polarization: -1.74 SS G_CDS: 0.78 Total: -0.97 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.90 Total: 47.30 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -79.13 0.43 -78.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096169359.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.134 kcal (2) G-P(sol) polarization free energy of solvation -79.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds