Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86792 * 120.00152 * 2 1 4 4 H 1.48501 * 109.47412 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47368 * 300.00125 * 3 2 1 6 6 H 1.48503 * 109.47012 * 59.99977 * 3 2 1 7 7 C 1.38800 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00556 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99996 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47012 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00232 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99891 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00142 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47400 * 180.02562 * 14 13 11 16 16 H 1.08996 * 109.46607 * 65.00143 * 15 14 13 17 17 N 1.46495 * 109.46966 * 304.99967 * 15 14 13 18 18 C 1.39120 * 119.99599 * 154.99528 * 17 15 14 19 19 N 1.32565 * 120.11101 * 0.02562 * 18 17 15 20 20 C 1.32302 * 119.94306 * 179.97438 * 19 18 17 21 21 C 1.38065 * 120.16575 * 0.02562 * 20 19 18 22 22 N 1.32349 * 120.22405 * 0.02562 * 21 20 19 23 23 C 1.32068 * 120.04995 * 359.97438 * 22 21 20 24 24 F 1.35107 * 120.07998 * 179.97438 * 23 22 21 25 25 C 1.52994 * 109.47011 * 185.00153 * 15 14 13 26 26 C 1.53011 * 117.49870 * 248.62216 * 25 15 14 27 27 C 1.53000 * 59.99910 * 252.51006 * 26 25 15 28 28 H 0.96998 * 119.99801 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47197 * 60.00406 * 10 9 7 30 30 H 1.09001 * 109.47199 * 300.00068 * 10 9 7 31 31 H 0.97006 * 119.99741 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.47048 * 60.00341 * 14 13 11 33 33 H 1.09001 * 109.47623 * 300.00290 * 14 13 11 34 34 H 0.96996 * 120.00517 * 335.00099 * 17 15 14 35 35 H 1.08002 * 119.91865 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.88650 * 179.72239 * 21 20 19 37 37 H 1.08998 * 115.55956 * 34.33033 * 25 15 14 38 38 H 1.09000 * 117.49480 * 0.02562 * 26 25 15 39 39 H 1.08995 * 117.50040 * 145.02072 * 26 25 15 40 40 H 1.09001 * 117.50304 * 252.50772 * 27 26 25 41 41 H 1.09011 * 117.49650 * 107.48551 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3432 0.0008 14 6 2.3304 -7.7151 0.0008 15 6 3.5024 -8.6986 0.0009 16 1 4.0598 -8.5994 0.9323 17 7 4.3858 -8.4057 -1.1304 18 6 5.7277 -8.7687 -1.0772 19 7 6.2092 -9.3802 -0.0041 20 6 7.4858 -9.7244 0.0427 21 6 8.3185 -9.4479 -1.0233 22 7 7.8450 -8.8368 -2.0975 23 6 6.5720 -8.4893 -2.1535 24 9 6.0881 -7.8650 -3.2496 25 6 2.9694 -10.1272 -0.1248 26 6 3.1152 -11.0452 1.0906 27 6 3.9930 -11.2642 -0.1432 28 1 -0.4850 0.8400 0.0004 29 1 3.1244 -3.7314 0.8905 30 1 3.1245 -3.7314 -0.8894 31 1 3.8009 -6.1835 0.0004 32 1 1.7215 -7.8751 -0.8890 33 1 1.7220 -7.8753 0.8909 34 1 4.0351 -7.9586 -1.9166 35 1 7.8778 -10.2222 0.9174 36 1 9.3609 -9.7269 -0.9784 37 1 2.0768 -10.2437 -0.7395 38 1 3.5905 -10.6311 1.9799 39 1 2.3185 -11.7656 1.2757 40 1 3.7739 -12.1287 -0.7699 41 1 5.0464 -10.9943 -0.0658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096585327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = 9.014595 kcal Electronic energy + Delta-G solvation = -26316.326345 eV Core-core repulsion = 22273.674116 eV Total energy + Delta-G solvation = -4042.652228 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -49.33713 -41.45729 -39.57338 -38.44951 -35.85336 -34.78798 -33.77569 -32.44350 -31.23446 -29.65438 -28.09414 -25.53206 -25.13248 -24.13540 -23.33003 -22.58999 -21.05771 -20.23845 -18.93762 -18.41357 -18.13308 -17.84448 -16.85115 -16.37736 -16.27651 -15.96664 -15.63780 -15.36268 -14.92761 -14.81777 -14.60213 -14.37537 -14.12325 -13.81466 -13.72200 -13.23655 -13.01733 -12.69144 -12.56770 -12.29587 -12.16356 -11.86192 -11.63257 -11.50345 -11.07981 -11.03677 -10.78580 -10.73884 -10.56897 -10.44056 -9.82503 -9.68635 -9.48023 -9.09903 -9.00678 -8.30030 -8.25975 -6.52127 -6.23444 -3.94105 0.33361 0.66871 2.33532 2.94729 3.02270 3.06706 3.15806 3.20788 3.26834 3.31305 3.48630 3.65148 3.74777 3.83990 4.18764 4.23155 4.49378 4.57863 4.67549 4.71693 4.78308 4.91820 5.03392 5.10047 5.11999 5.14919 5.39968 5.40892 5.53285 5.60734 5.71933 5.73312 5.84094 5.85730 5.97506 6.10668 6.38287 6.48471 6.49131 6.96528 7.35170 7.57837 7.59651 8.33994 8.52546 9.22213 10.84054 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.002493 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.101459 B =11226.663151 C =12637.363879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.059 6.059 10 C -0.154 4.154 11 C 0.533 3.467 12 O -0.515 6.515 13 N -0.740 5.740 14 C 0.116 3.884 15 C 0.176 3.824 16 H 0.101 0.899 17 N -0.699 5.699 18 C 0.358 3.642 19 N -0.475 5.475 20 C 0.094 3.906 21 C 0.010 3.990 22 N -0.430 5.430 23 C 0.198 3.802 24 F -0.106 7.106 25 C -0.171 4.171 26 C -0.164 4.164 27 C -0.179 4.179 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.398 0.602 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.418 0.582 35 H 0.178 0.822 36 H 0.175 0.825 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.094 0.906 40 H 0.086 0.914 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.408 -25.181 0.537 29.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.388 6.388 13 N -0.396 5.396 14 C -0.009 4.009 15 C 0.071 3.929 16 H 0.118 0.882 17 N -0.332 5.332 18 C 0.115 3.885 19 N -0.199 5.199 20 C -0.066 4.066 21 C -0.150 4.150 22 N -0.149 5.149 23 C 0.033 3.967 24 F -0.085 7.085 25 C -0.191 4.191 26 C -0.201 4.201 27 C -0.216 4.216 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.092 0.908 33 H 0.105 0.895 34 H 0.256 0.744 35 H 0.195 0.805 36 H 0.192 0.808 37 H 0.126 0.874 38 H 0.116 0.884 39 H 0.112 0.888 40 H 0.104 0.896 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 13.079 -25.405 0.659 28.581 hybrid contribution 2.245 1.569 -0.620 2.808 sum 15.323 -23.836 0.039 28.337 Atomic orbital electron populations 1.70028 1.05948 1.27373 1.46931 1.24997 0.95038 0.99060 0.94514 0.86110 0.79591 0.81842 0.77918 1.19615 1.20538 1.20550 1.22903 0.94936 0.91615 1.58874 0.90887 1.85387 1.04808 0.96352 1.96716 1.23532 1.06654 0.95318 1.04942 1.20322 0.86470 0.86247 0.75044 1.90713 1.15280 1.85564 1.47282 1.45990 1.10068 1.05197 1.78315 1.21548 0.94944 0.80541 1.03835 1.20838 0.90010 0.92086 0.89946 0.88150 1.44773 1.04158 1.62868 1.21403 1.19058 0.87035 0.92632 0.89750 1.68067 1.15193 1.13956 1.22690 1.23565 0.88199 0.95477 0.99368 1.23190 1.02093 1.00335 0.89334 1.67619 1.11567 1.08601 1.27126 1.18418 0.90032 1.02767 0.85522 1.91646 1.86311 1.79434 1.51140 1.22599 1.01724 0.90994 1.03774 1.22924 1.02667 1.02093 0.92430 1.23226 0.98432 0.98881 1.01082 0.92218 0.89249 0.89226 0.76786 0.90812 0.89521 0.74370 0.80494 0.80764 0.87383 0.88396 0.88774 0.89595 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.14 13.22 55.49 0.73 -25.41 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.45 29.55 -169.99 -5.02 16.43 16 4 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.54 -15.24 9.50 30.94 0.29 -14.94 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -3.07 6.16 36.01 0.22 -2.85 16 11 C 0.53 9.58 7.85 -10.98 -0.09 9.50 16 12 O -0.51 -11.29 15.86 5.56 0.09 -11.20 16 13 N -0.74 -9.21 5.39 -60.29 -0.32 -9.54 16 14 C 0.12 1.19 5.21 -4.04 -0.02 1.17 16 15 C 0.18 1.40 2.44 -67.93 -0.17 1.24 16 16 H 0.10 0.85 7.31 -51.93 -0.38 0.47 16 17 N -0.70 -5.67 4.64 -53.73 -0.25 -5.92 16 18 C 0.36 3.15 6.81 -154.58 -1.05 2.10 16 19 N -0.48 -3.67 6.60 -12.17 -0.08 -3.75 16 20 C 0.09 0.51 11.21 -17.41 -0.20 0.32 16 21 C 0.01 0.07 11.21 -17.39 -0.19 -0.13 16 22 N -0.43 -4.26 10.50 -13.23 -0.14 -4.40 16 23 C 0.20 2.02 8.47 -16.94 -0.14 1.88 16 24 F -0.11 -1.18 16.68 2.25 0.04 -1.14 16 25 C -0.17 -1.28 5.36 -90.61 -0.49 -1.76 16 26 C -0.16 -1.12 10.18 -26.73 -0.27 -1.39 16 27 C -0.18 -1.33 9.75 -26.73 -0.26 -1.59 16 28 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 31 H 0.40 4.21 8.14 -40.82 -0.33 3.88 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.42 3.39 8.09 -40.82 -0.33 3.06 16 35 H 0.18 0.34 8.06 -52.49 -0.42 -0.08 16 36 H 0.18 0.53 8.06 -52.48 -0.42 0.11 16 37 H 0.11 0.81 8.11 -51.93 -0.42 0.38 16 38 H 0.10 0.66 8.05 -51.93 -0.42 0.24 16 39 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.11 0.90 4.75 -51.92 -0.25 0.65 16 LS Contribution 369.51 15.07 5.57 5.57 Total: -1.00 -35.17 369.51 -9.11 -44.29 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.05 Total: 3.34 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -2.46 Total: -4.47 kcal Atomic # 7 Polarization: -48.95 SS G_CDS: -0.06 Total: -49.01 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.17 -9.11 -44.29 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096585327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.300 kcal (2) G-P(sol) polarization free energy of solvation -35.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds