Wall clock time and date at job start Sat Apr 11 2020 05:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86792 * 120.00152 * 2 1 4 4 H 1.48501 * 109.47412 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47368 * 300.00125 * 3 2 1 6 6 H 1.48503 * 109.47012 * 59.99977 * 3 2 1 7 7 C 1.38800 * 120.00063 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00556 * 180.02562 * 7 2 1 9 9 S 1.76201 * 119.99856 * 0.02562 * 7 2 1 10 10 C 1.80997 * 99.99996 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47012 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00232 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99891 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00142 * 180.02562 * 13 11 10 15 15 C 1.53003 * 109.47400 * 180.02562 * 14 13 11 16 16 H 1.08996 * 109.46607 * 65.00143 * 15 14 13 17 17 N 1.46495 * 109.46966 * 304.99967 * 15 14 13 18 18 C 1.39120 * 119.99599 * 154.99528 * 17 15 14 19 19 N 1.32565 * 120.11101 * 0.02562 * 18 17 15 20 20 C 1.32302 * 119.94306 * 179.97438 * 19 18 17 21 21 C 1.38065 * 120.16575 * 0.02562 * 20 19 18 22 22 N 1.32349 * 120.22405 * 0.02562 * 21 20 19 23 23 C 1.32068 * 120.04995 * 359.97438 * 22 21 20 24 24 F 1.35107 * 120.07998 * 179.97438 * 23 22 21 25 25 C 1.52994 * 109.47011 * 185.00153 * 15 14 13 26 26 C 1.53011 * 117.49870 * 248.62216 * 25 15 14 27 27 C 1.53000 * 59.99910 * 252.51006 * 26 25 15 28 28 H 0.96998 * 119.99801 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47197 * 60.00406 * 10 9 7 30 30 H 1.09001 * 109.47199 * 300.00068 * 10 9 7 31 31 H 0.97006 * 119.99741 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.47048 * 60.00341 * 14 13 11 33 33 H 1.09001 * 109.47623 * 300.00290 * 14 13 11 34 34 H 0.96996 * 120.00517 * 335.00099 * 17 15 14 35 35 H 1.08002 * 119.91865 * 179.97438 * 20 19 18 36 36 H 1.08004 * 119.88650 * 179.72239 * 21 20 19 37 37 H 1.08998 * 115.55956 * 34.33033 * 25 15 14 38 38 H 1.09000 * 117.49480 * 0.02562 * 26 25 15 39 39 H 1.08995 * 117.50040 * 145.02072 * 26 25 15 40 40 H 1.09001 * 117.50304 * 252.50772 * 27 26 25 41 41 H 1.09011 * 117.49650 * 107.48551 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8916 2.3963 1.2125 7 6 2.0104 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8441 -6.3432 0.0008 14 6 2.3304 -7.7151 0.0008 15 6 3.5024 -8.6986 0.0009 16 1 4.0598 -8.5994 0.9323 17 7 4.3858 -8.4057 -1.1304 18 6 5.7277 -8.7687 -1.0772 19 7 6.2092 -9.3802 -0.0041 20 6 7.4858 -9.7244 0.0427 21 6 8.3185 -9.4479 -1.0233 22 7 7.8450 -8.8368 -2.0975 23 6 6.5720 -8.4893 -2.1535 24 9 6.0881 -7.8650 -3.2496 25 6 2.9694 -10.1272 -0.1248 26 6 3.1152 -11.0452 1.0906 27 6 3.9930 -11.2642 -0.1432 28 1 -0.4850 0.8400 0.0004 29 1 3.1244 -3.7314 0.8905 30 1 3.1245 -3.7314 -0.8894 31 1 3.8009 -6.1835 0.0004 32 1 1.7215 -7.8751 -0.8890 33 1 1.7220 -7.8753 0.8909 34 1 4.0351 -7.9586 -1.9166 35 1 7.8778 -10.2222 0.9174 36 1 9.3609 -9.7269 -0.9784 37 1 2.0768 -10.2437 -0.7395 38 1 3.5905 -10.6311 1.9799 39 1 2.3185 -11.7656 1.2757 40 1 3.7739 -12.1287 -0.7699 41 1 5.0464 -10.9943 -0.0658 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096585327.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:53 Heat of formation + Delta-G solvation = -15.680605 kcal Electronic energy + Delta-G solvation = -26317.397209 eV Core-core repulsion = 22273.674116 eV Total energy + Delta-G solvation = -4043.723093 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.05361 -42.04083 -40.76984 -39.32507 -36.51714 -35.73265 -34.60542 -34.52588 -32.19609 -30.75126 -29.04936 -27.67499 -25.80871 -24.75542 -24.12014 -23.13792 -21.99731 -21.27976 -19.98125 -19.43806 -19.05859 -18.73348 -17.85594 -17.47587 -17.38204 -16.89627 -16.73929 -16.56742 -16.04998 -15.88776 -15.84716 -15.28079 -15.01930 -14.80170 -14.66483 -14.35315 -14.28946 -14.10934 -13.37168 -13.25177 -13.17735 -12.93782 -12.89487 -12.83499 -12.60712 -12.33509 -12.07331 -11.73559 -11.33429 -11.24042 -11.17306 -11.03177 -10.91749 -10.29850 -10.29002 -10.17711 -8.90171 -8.68079 -8.36570 -6.14341 -0.22868 0.09716 1.24663 1.40079 1.44821 1.55939 1.56671 1.72440 2.19885 2.26043 2.46771 2.61002 2.93573 2.97722 3.23518 3.26416 3.29430 3.51853 3.81331 3.97076 4.04638 4.09861 4.15174 4.23820 4.27271 4.32304 4.47229 4.47845 4.56097 4.64181 4.81927 4.87175 5.05656 5.19429 5.28195 5.33346 5.40079 5.40619 5.80915 5.89315 6.18410 6.37813 6.39002 6.76705 7.05095 7.16611 8.72874 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013810 B = 0.002493 C = 0.002215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.101459 B =11226.663151 C =12637.363879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.081 0.919 9 S -0.146 6.146 10 C -0.132 4.132 11 C 0.537 3.463 12 O -0.560 6.560 13 N -0.713 5.713 14 C 0.118 3.882 15 C 0.193 3.807 16 H 0.103 0.897 17 N -0.701 5.701 18 C 0.354 3.646 19 N -0.481 5.481 20 C 0.107 3.893 21 C 0.015 3.985 22 N -0.459 5.459 23 C 0.164 3.836 24 F -0.122 7.122 25 C -0.178 4.178 26 C -0.156 4.156 27 C -0.179 4.179 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.411 0.589 32 H 0.071 0.929 33 H 0.085 0.915 34 H 0.416 0.584 35 H 0.220 0.780 36 H 0.209 0.791 37 H 0.107 0.893 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.086 0.914 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.252 -26.282 1.656 32.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.694 4.694 8 H 0.099 0.901 9 S 0.081 5.919 10 C -0.283 4.283 11 C 0.323 3.677 12 O -0.437 6.437 13 N -0.367 5.367 14 C -0.006 4.006 15 C 0.088 3.912 16 H 0.121 0.879 17 N -0.334 5.334 18 C 0.113 3.887 19 N -0.204 5.204 20 C -0.053 4.053 21 C -0.146 4.146 22 N -0.178 5.178 23 C 0.000 4.000 24 F -0.102 7.102 25 C -0.198 4.198 26 C -0.193 4.193 27 C -0.216 4.216 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.125 0.875 31 H 0.248 0.752 32 H 0.089 0.911 33 H 0.103 0.897 34 H 0.254 0.746 35 H 0.236 0.764 36 H 0.226 0.774 37 H 0.125 0.875 38 H 0.120 0.880 39 H 0.120 0.880 40 H 0.105 0.895 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 15.946 -26.534 1.761 31.006 hybrid contribution 1.519 1.699 -0.909 2.454 sum 17.465 -24.835 0.852 30.373 Atomic orbital electron populations 1.70183 1.07916 1.28579 1.48014 1.26116 0.95979 1.03286 0.93736 0.84911 0.78551 0.76386 0.78136 1.18179 1.19910 1.19816 1.23226 0.95289 0.92097 1.58830 0.90098 1.85528 1.10263 0.99075 1.97032 1.23377 1.03678 0.94655 1.06587 1.19977 0.86180 0.86492 0.75086 1.90704 1.17149 1.86003 1.49875 1.45697 1.10082 1.05052 1.75877 1.21672 0.95987 0.79320 1.03668 1.20634 0.88921 0.91635 0.89997 0.87924 1.44728 1.04171 1.63178 1.21306 1.18992 0.86908 0.93002 0.89792 1.68160 1.16384 1.13806 1.22098 1.24297 0.87157 0.93706 1.00189 1.23873 1.03702 0.98651 0.88371 1.67609 1.11710 1.09586 1.28931 1.18555 0.90718 1.04773 0.85910 1.91590 1.86583 1.80010 1.51998 1.22567 1.01897 0.90650 1.04654 1.22987 1.02535 1.01623 0.92174 1.23210 0.98227 0.98639 1.01526 0.91948 0.87428 0.87534 0.75248 0.91119 0.89651 0.74590 0.76362 0.77448 0.87503 0.87952 0.88040 0.89530 0.87143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.96 13.22 21.65 0.29 -55.67 16 2 C 0.01 0.78 5.49 84.86 0.47 1.24 16 3 Si 1.00 43.82 29.55 68.60 2.03 45.85 16 4 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 5 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 7 C -0.55 -31.32 9.50 67.95 0.65 -30.68 16 8 H 0.08 4.34 7.80 -2.92 -0.02 4.31 16 9 S -0.15 -8.09 20.57 -56.49 -1.16 -9.25 16 10 C -0.13 -5.20 6.16 71.24 0.44 -4.76 16 11 C 0.54 19.17 7.85 87.66 0.69 19.85 16 12 O -0.56 -25.03 15.86 -3.03 -0.05 -25.08 16 13 N -0.71 -16.94 5.39 -463.05 -2.49 -19.44 16 14 C 0.12 2.30 5.21 86.38 0.45 2.75 16 15 C 0.19 2.80 2.44 44.99 0.11 2.91 16 16 H 0.10 1.50 7.31 -2.39 -0.02 1.49 16 17 N -0.70 -10.74 4.64 -323.91 -1.50 -12.25 16 18 C 0.35 5.82 6.81 133.09 0.91 6.73 16 19 N -0.48 -6.24 6.60 -192.42 -1.27 -7.51 16 20 C 0.11 0.80 11.21 84.58 0.95 1.75 16 21 C 0.01 0.15 11.21 84.57 0.95 1.10 16 22 N -0.46 -8.60 10.50 -195.79 -2.06 -10.65 16 23 C 0.16 3.29 8.47 84.99 0.72 4.01 16 24 F -0.12 -2.81 16.68 44.97 0.75 -2.06 16 25 C -0.18 -2.40 5.36 -10.79 -0.06 -2.46 16 26 C -0.16 -1.80 10.18 30.60 0.31 -1.49 16 27 C -0.18 -2.33 9.75 30.60 0.30 -2.03 16 28 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 29 H 0.11 3.85 8.14 -2.40 -0.02 3.83 16 30 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 31 H 0.41 7.94 8.14 -92.70 -0.75 7.18 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.42 6.64 8.09 -92.71 -0.75 5.89 16 35 H 0.22 -0.29 8.06 -2.91 -0.02 -0.31 16 36 H 0.21 0.45 8.06 -2.91 -0.02 0.43 16 37 H 0.11 1.49 8.11 -2.39 -0.02 1.47 16 38 H 0.10 1.11 8.05 -2.39 -0.02 1.09 16 39 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.11 1.51 4.75 -2.38 -0.01 1.50 16 Total: -1.00 -79.16 369.51 0.99 -78.17 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -0.41 Total: 18.94 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: 6.87 Total: -1.06 kcal Atomic # 7 Polarization: -98.47 SS G_CDS: -7.04 Total: -105.51 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.05 Total: -25.08 kcal Atomic # 9 Polarization: -2.81 SS G_CDS: 0.75 Total: -2.06 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 16 Polarization: -8.09 SS G_CDS: -1.16 Total: -9.25 kcal Total: -79.16 0.99 -78.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096585327.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.491 kcal (2) G-P(sol) polarization free energy of solvation -79.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds