Wall clock time and date at job start Sat Apr 11 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99604 * 2 1 4 4 H 1.48504 * 109.46874 * 239.99407 * 3 2 1 5 5 H 1.48502 * 109.47360 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47130 * 120.00077 * 3 2 1 7 7 C 1.38789 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00023 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00144 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47086 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99611 * 0.02562 * 11 10 9 13 13 N 1.34768 * 119.99989 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00036 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47590 * 179.97438 * 14 13 11 16 16 H 1.09003 * 109.46982 * 64.99778 * 15 14 13 17 17 N 1.46499 * 109.46904 * 305.00533 * 15 14 13 18 18 C 1.38573 * 120.00221 * 151.24123 * 17 15 14 19 19 C 1.39461 * 120.51342 * 5.83587 * 18 17 15 20 20 C 1.38466 * 118.31269 * 179.97438 * 19 18 17 21 21 F 1.35100 * 120.43285 * 179.97438 * 20 19 18 22 22 N 1.32788 * 119.14052 * 0.02562 * 20 19 18 23 23 C 1.31759 * 120.96037 * 0.02562 * 22 20 19 24 24 N 1.31768 * 121.86024 * 359.73386 * 23 22 20 25 25 C 1.52991 * 109.47468 * 184.99987 * 15 14 13 26 26 C 1.53000 * 117.49963 * 128.22279 * 25 15 14 27 27 C 1.52997 * 117.49957 * 59.59904 * 25 15 14 28 28 H 0.97000 * 119.99989 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47102 * 60.00662 * 10 9 7 30 30 H 1.08999 * 109.47489 * 299.99724 * 10 9 7 31 31 H 0.97000 * 120.00445 * 359.97438 * 13 11 10 32 32 H 1.09007 * 109.47058 * 59.99723 * 14 13 11 33 33 H 1.08999 * 109.47110 * 300.00131 * 14 13 11 34 34 H 0.97008 * 120.00080 * 331.22941 * 17 15 14 35 35 H 1.08000 * 120.84592 * 0.02562 * 19 18 17 36 36 H 1.08001 * 119.07247 * 180.02562 * 23 22 20 37 37 H 1.09004 * 115.55021 * 273.92976 * 25 15 14 38 38 H 1.08999 * 117.50031 * 359.97438 * 26 25 15 39 39 H 1.08996 * 117.50174 * 145.02293 * 26 25 15 40 40 H 1.09002 * 117.50018 * 214.98101 * 27 25 15 41 41 H 1.09002 * 117.49862 * 359.97436 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7913 -5.5023 0.0000 13 7 2.8444 -6.3430 0.0033 14 6 2.3307 -7.7150 0.0023 15 6 3.5027 -8.6985 0.0038 16 1 4.0589 -8.5995 0.9360 17 7 4.3877 -8.4052 -1.1263 18 6 5.7399 -8.6960 -1.0411 19 6 6.2495 -9.3771 0.0640 20 6 7.6076 -9.6443 0.1018 21 9 8.1468 -10.3011 1.1521 22 7 8.3733 -9.2459 -0.9072 23 6 7.8588 -8.6033 -1.9360 24 7 6.5715 -8.3328 -2.0140 25 6 2.9700 -10.1270 -0.1230 26 6 3.5709 -11.0106 -1.2180 27 6 2.1486 -10.4668 -1.3682 28 1 -0.4850 0.8400 -0.0004 29 1 3.1239 -3.7309 0.8925 30 1 3.1253 -3.7317 -0.8874 31 1 3.8012 -6.1834 0.0043 32 1 1.7237 -7.8751 -0.8888 33 1 1.7205 -7.8751 0.8911 34 1 4.0271 -8.0075 -1.9343 35 1 5.6012 -9.6890 0.8695 36 1 8.5097 -8.2936 -2.7402 37 1 2.6869 -10.6080 0.8134 38 1 4.3454 -10.5739 -1.8485 39 1 3.6833 -12.0730 -1.0023 40 1 1.3254 -11.1716 -1.2513 41 1 1.9875 -9.6725 -2.0970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096585629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:02 Heat of formation + Delta-G solvation = 6.764960 kcal Electronic energy + Delta-G solvation = -26144.516454 eV Core-core repulsion = 22101.766675 eV Total energy + Delta-G solvation = -4042.749780 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.51976 -41.43492 -39.78696 -38.69078 -35.73666 -34.62766 -33.05430 -32.45878 -31.49983 -30.07974 -28.36766 -25.56329 -25.17177 -23.94649 -23.81944 -22.65048 -20.80520 -20.25176 -19.25308 -18.54842 -17.86927 -17.10463 -16.63783 -16.46993 -16.43869 -16.00152 -15.91963 -15.38900 -15.17102 -15.00764 -14.82858 -14.54419 -14.20516 -13.97147 -13.92313 -13.36601 -13.06301 -12.69458 -12.59663 -12.37709 -12.00854 -11.77871 -11.52617 -11.18982 -11.07908 -11.05883 -10.83023 -10.78199 -10.56167 -10.23124 -9.87548 -9.86142 -9.52717 -9.11269 -9.05030 -8.83137 -8.29154 -6.54220 -6.24641 -3.95833 0.44923 0.77337 2.28908 2.89158 2.98298 2.99778 3.21783 3.22021 3.26605 3.29586 3.34135 3.62021 3.77958 4.15226 4.17565 4.19520 4.26138 4.35136 4.56863 4.67274 4.71009 4.76363 4.95060 5.07451 5.10607 5.13773 5.24812 5.31641 5.44951 5.47704 5.59120 5.67765 5.72236 5.81143 5.83766 6.08076 6.11879 6.41153 6.58706 6.94012 7.52978 7.56733 7.68068 8.32006 8.47899 9.20733 10.82716 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.002407 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.129275 B =11627.945589 C =13112.825720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.058 6.058 10 C -0.154 4.154 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.741 5.741 14 C 0.117 3.883 15 C 0.168 3.832 16 H 0.100 0.900 17 N -0.697 5.697 18 C 0.466 3.534 19 C -0.313 4.313 20 C 0.383 3.617 21 F -0.103 7.103 22 N -0.593 5.593 23 C 0.377 3.623 24 N -0.580 5.580 25 C -0.176 4.176 26 C -0.168 4.168 27 C -0.169 4.169 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.399 0.601 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.415 0.585 35 H 0.155 0.845 36 H 0.208 0.792 37 H 0.120 0.880 38 H 0.094 0.906 39 H 0.094 0.906 40 H 0.098 0.902 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.517 -23.945 -1.517 27.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.388 6.388 13 N -0.396 5.396 14 C -0.008 4.008 15 C 0.063 3.937 16 H 0.118 0.882 17 N -0.329 5.329 18 C 0.222 3.778 19 C -0.343 4.343 20 C 0.225 3.775 21 F -0.082 7.082 22 N -0.318 5.318 23 C 0.087 3.913 24 N -0.305 5.305 25 C -0.196 4.196 26 C -0.205 4.205 27 C -0.206 4.206 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.233 0.767 32 H 0.095 0.905 33 H 0.106 0.894 34 H 0.253 0.747 35 H 0.172 0.828 36 H 0.224 0.776 37 H 0.138 0.862 38 H 0.113 0.887 39 H 0.112 0.888 40 H 0.116 0.884 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.770 -23.967 -1.991 26.351 hybrid contribution 1.935 1.037 0.618 2.280 sum 12.705 -22.930 -1.372 26.251 Atomic orbital electron populations 1.70005 1.05952 1.27621 1.46721 1.24988 0.95035 0.99038 0.94464 0.86222 0.79245 0.81194 0.78838 1.19908 1.20778 1.19922 1.22821 0.94874 0.91638 1.59177 0.90978 1.85378 1.04748 0.96326 1.96736 1.23532 1.06685 0.95279 1.04953 1.20324 0.86452 0.86250 0.74998 1.90718 1.15274 1.85559 1.47246 1.45989 1.10118 1.05116 1.78405 1.21529 0.94639 0.80427 1.04158 1.20933 0.90404 0.92869 0.89531 0.88201 1.44690 1.02961 1.65795 1.19462 1.18228 0.85946 0.85816 0.87799 1.21830 0.95656 1.12586 1.04230 1.18017 0.87610 0.88283 0.83620 1.91664 1.86966 1.76961 1.52564 1.67864 1.41139 1.19138 1.03652 1.24569 0.87978 0.86293 0.92424 1.68057 1.05339 1.27225 1.29848 1.22763 1.06022 0.95338 0.95436 1.22962 0.97044 0.98981 1.01523 1.22955 0.94596 1.03644 0.99415 0.92091 0.89249 0.89213 0.76721 0.90496 0.89431 0.74662 0.82767 0.77609 0.86249 0.88723 0.88796 0.88366 0.88543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.94 13.22 55.49 0.73 -25.20 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.25 29.55 -169.99 -5.02 16.23 16 4 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 7 C -0.54 -15.13 9.50 30.94 0.29 -14.84 16 8 H 0.07 1.92 7.80 -52.49 -0.41 1.51 16 9 S -0.06 -1.55 20.57 -107.50 -2.21 -3.77 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 11 C 0.53 9.21 7.85 -10.99 -0.09 9.13 16 12 O -0.51 -10.92 15.86 5.55 0.09 -10.83 16 13 N -0.74 -8.48 5.39 -60.29 -0.32 -8.80 16 14 C 0.12 1.04 5.16 -4.04 -0.02 1.02 16 15 C 0.17 1.00 2.23 -67.94 -0.15 0.85 16 16 H 0.10 0.53 6.56 -51.93 -0.34 0.19 16 17 N -0.70 -4.60 3.42 -53.81 -0.18 -4.78 16 18 C 0.47 3.71 6.32 -154.77 -0.98 2.73 16 19 C -0.31 -2.42 9.17 -39.04 -0.36 -2.78 16 20 C 0.38 3.60 8.50 -17.05 -0.14 3.45 16 21 F -0.10 -0.99 17.30 2.25 0.04 -0.95 16 22 N -0.59 -5.83 10.45 -14.98 -0.16 -5.99 16 23 C 0.38 3.07 12.28 -92.21 -1.13 1.94 16 24 N -0.58 -5.15 10.47 -13.84 -0.14 -5.30 16 25 C -0.18 -0.94 5.77 -90.63 -0.52 -1.46 16 26 C -0.17 -1.00 9.62 -26.73 -0.26 -1.25 16 27 C -0.17 -1.00 9.59 -26.73 -0.26 -1.26 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 31 H 0.40 3.84 8.14 -40.82 -0.33 3.51 16 32 H 0.08 0.74 7.10 -51.93 -0.37 0.37 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.42 2.94 8.76 -40.82 -0.36 2.58 16 35 H 0.15 0.93 6.39 -52.49 -0.34 0.59 16 36 H 0.21 0.98 8.06 -52.49 -0.42 0.55 16 37 H 0.12 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.68 6.04 -51.93 -0.31 0.36 16 39 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.63 7.56 -51.93 -0.39 0.23 16 LS Contribution 368.79 15.07 5.56 5.56 Total: -1.00 -34.42 368.79 -10.06 -44.48 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -4.94 Total: 2.60 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -3.49 Total: -3.24 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: -0.08 Total: -50.08 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.42 -10.06 -44.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096585629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.241 kcal (2) G-P(sol) polarization free energy of solvation -34.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds