Wall clock time and date at job start Sat Apr 11 2020 05:57:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86800 * 119.99604 * 2 1 4 4 H 1.48504 * 109.46874 * 239.99407 * 3 2 1 5 5 H 1.48502 * 109.47360 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47130 * 120.00077 * 3 2 1 7 7 C 1.38789 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00023 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00338 * 0.02562 * 7 2 1 10 10 C 1.80999 * 100.00144 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47086 * 180.02562 * 10 9 7 12 12 O 1.21288 * 119.99611 * 0.02562 * 11 10 9 13 13 N 1.34768 * 119.99989 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00036 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.47590 * 179.97438 * 14 13 11 16 16 H 1.09003 * 109.46982 * 64.99778 * 15 14 13 17 17 N 1.46499 * 109.46904 * 305.00533 * 15 14 13 18 18 C 1.38573 * 120.00221 * 151.24123 * 17 15 14 19 19 C 1.39461 * 120.51342 * 5.83587 * 18 17 15 20 20 C 1.38466 * 118.31269 * 179.97438 * 19 18 17 21 21 F 1.35100 * 120.43285 * 179.97438 * 20 19 18 22 22 N 1.32788 * 119.14052 * 0.02562 * 20 19 18 23 23 C 1.31759 * 120.96037 * 0.02562 * 22 20 19 24 24 N 1.31768 * 121.86024 * 359.73386 * 23 22 20 25 25 C 1.52991 * 109.47468 * 184.99987 * 15 14 13 26 26 C 1.53000 * 117.49963 * 128.22279 * 25 15 14 27 27 C 1.52997 * 117.49957 * 59.59904 * 25 15 14 28 28 H 0.97000 * 119.99989 * 0.02562 * 1 2 3 29 29 H 1.08997 * 109.47102 * 60.00662 * 10 9 7 30 30 H 1.08999 * 109.47489 * 299.99724 * 10 9 7 31 31 H 0.97000 * 120.00445 * 359.97438 * 13 11 10 32 32 H 1.09007 * 109.47058 * 59.99723 * 14 13 11 33 33 H 1.08999 * 109.47110 * 300.00131 * 14 13 11 34 34 H 0.97008 * 120.00080 * 331.22941 * 17 15 14 35 35 H 1.08000 * 120.84592 * 0.02562 * 19 18 17 36 36 H 1.08001 * 119.07247 * 180.02562 * 23 22 20 37 37 H 1.09004 * 115.55021 * 273.92976 * 25 15 14 38 38 H 1.08999 * 117.50031 * 359.97438 * 26 25 15 39 39 H 1.08996 * 117.50174 * 145.02293 * 26 25 15 40 40 H 1.09002 * 117.50018 * 214.98101 * 27 25 15 41 41 H 1.09002 * 117.49862 * 359.97436 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7465 -0.0006 6 1 3.1040 1.6965 1.2125 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5160 -3.8913 0.0021 11 6 1.9876 -5.3027 0.0017 12 8 0.7913 -5.5023 0.0000 13 7 2.8444 -6.3430 0.0033 14 6 2.3307 -7.7150 0.0023 15 6 3.5027 -8.6985 0.0038 16 1 4.0589 -8.5995 0.9360 17 7 4.3877 -8.4052 -1.1263 18 6 5.7399 -8.6960 -1.0411 19 6 6.2495 -9.3771 0.0640 20 6 7.6076 -9.6443 0.1018 21 9 8.1468 -10.3011 1.1521 22 7 8.3733 -9.2459 -0.9072 23 6 7.8588 -8.6033 -1.9360 24 7 6.5715 -8.3328 -2.0140 25 6 2.9700 -10.1270 -0.1230 26 6 3.5709 -11.0106 -1.2180 27 6 2.1486 -10.4668 -1.3682 28 1 -0.4850 0.8400 -0.0004 29 1 3.1239 -3.7309 0.8925 30 1 3.1253 -3.7317 -0.8874 31 1 3.8012 -6.1834 0.0043 32 1 1.7237 -7.8751 -0.8888 33 1 1.7205 -7.8751 0.8911 34 1 4.0271 -8.0075 -1.9343 35 1 5.6012 -9.6890 0.8695 36 1 8.5097 -8.2936 -2.7402 37 1 2.6869 -10.6080 0.8134 38 1 4.3454 -10.5739 -1.8485 39 1 3.6833 -12.0730 -1.0023 40 1 1.3254 -11.1716 -1.2513 41 1 1.9875 -9.6725 -2.0970 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096585629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:02 Heat of formation + Delta-G solvation = -16.113036 kcal Electronic energy + Delta-G solvation = -26145.508519 eV Core-core repulsion = 22101.766675 eV Total energy + Delta-G solvation = -4043.741844 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.20573 -42.05478 -40.79455 -39.60108 -36.33038 -35.64416 -34.59020 -33.73509 -32.31211 -31.16742 -29.36183 -27.66777 -25.87208 -24.67358 -24.42081 -23.15497 -21.84628 -21.03357 -19.96118 -19.77367 -19.12944 -17.93564 -17.56660 -17.39141 -17.29131 -16.88288 -16.67017 -16.64400 -16.49022 -16.13890 -15.69611 -15.56547 -15.18725 -14.88357 -14.78276 -14.60225 -14.40811 -14.06403 -13.39725 -13.22576 -13.17717 -12.90263 -12.85573 -12.64723 -12.44629 -12.10257 -11.80080 -11.75486 -11.29270 -11.13662 -11.11482 -10.91345 -10.85002 -10.52853 -10.29193 -10.17278 -9.41636 -8.66807 -8.35368 -6.13148 -0.17036 0.14240 1.25811 1.43146 1.45668 1.55147 1.58905 1.71683 2.20932 2.27505 2.37429 2.69022 2.80566 2.98793 3.22003 3.30570 3.57853 3.65246 3.68556 3.82513 3.97619 4.01992 4.13668 4.18486 4.20803 4.28048 4.43132 4.50012 4.59220 4.64016 4.75624 4.84582 5.01063 5.10486 5.24924 5.28036 5.35249 5.40941 5.53185 5.98662 6.18788 6.33631 6.41236 7.06165 7.06939 7.19610 8.73462 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013323 B = 0.002407 C = 0.002135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.129275 B =11627.945589 C =13112.825720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.015 3.985 3 Si 0.996 3.004 4 H -0.263 1.263 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.549 4.549 8 H 0.081 0.919 9 S -0.146 6.146 10 C -0.132 4.132 11 C 0.537 3.463 12 O -0.560 6.560 13 N -0.713 5.713 14 C 0.117 3.883 15 C 0.179 3.821 16 H 0.117 0.883 17 N -0.692 5.692 18 C 0.464 3.536 19 C -0.304 4.304 20 C 0.366 3.634 21 F -0.109 7.109 22 N -0.614 5.614 23 C 0.374 3.626 24 N -0.594 5.594 25 C -0.167 4.167 26 C -0.166 4.166 27 C -0.176 4.176 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.412 0.588 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.414 0.586 35 H 0.173 0.827 36 H 0.234 0.766 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.349 -24.502 -1.240 28.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.190 4.190 3 Si 0.818 3.182 4 H -0.187 1.187 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.696 4.696 8 H 0.099 0.901 9 S 0.081 5.919 10 C -0.283 4.283 11 C 0.323 3.677 12 O -0.437 6.437 13 N -0.367 5.367 14 C -0.007 4.007 15 C 0.074 3.926 16 H 0.135 0.865 17 N -0.323 5.323 18 C 0.219 3.781 19 C -0.334 4.334 20 C 0.209 3.791 21 F -0.088 7.088 22 N -0.340 5.340 23 C 0.085 3.915 24 N -0.320 5.320 25 C -0.187 4.187 26 C -0.203 4.203 27 C -0.213 4.213 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.248 0.752 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.252 0.748 35 H 0.191 0.809 36 H 0.250 0.750 37 H 0.154 0.846 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.121 0.879 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 12.651 -24.569 -1.711 27.688 hybrid contribution 1.402 1.067 0.495 1.830 sum 14.053 -23.502 -1.216 27.410 Atomic orbital electron populations 1.70167 1.07905 1.28690 1.47913 1.26096 0.95954 1.03242 0.93731 0.85036 0.77848 0.75855 0.79470 1.18728 1.20352 1.18715 1.23169 0.95301 0.92176 1.58991 0.90086 1.85515 1.10298 0.99037 1.97041 1.23381 1.03624 0.94786 1.06543 1.19938 0.86183 0.86474 0.75106 1.90711 1.17170 1.85994 1.49862 1.45684 1.10082 1.05049 1.75884 1.21682 0.95852 0.79060 1.04058 1.20887 0.89355 0.92383 0.89995 0.86511 1.44680 1.02593 1.65521 1.19516 1.18315 0.86164 0.85790 0.87783 1.21923 0.95135 1.11832 1.04462 1.18242 0.88328 0.88891 0.83688 1.91646 1.87137 1.77177 1.52812 1.67876 1.41892 1.19955 1.04310 1.25126 0.88157 0.85609 0.92579 1.68100 1.05764 1.27751 1.30336 1.22801 1.05329 0.94600 0.95941 1.22905 0.96565 0.99315 1.01522 1.22974 0.94889 1.03698 0.99719 0.91961 0.87501 0.87564 0.75171 0.91001 0.89294 0.74798 0.80928 0.75011 0.84551 0.89873 0.88202 0.87884 0.89348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.41 13.22 21.65 0.29 -55.13 16 2 C 0.01 0.83 5.49 84.85 0.47 1.30 16 3 Si 1.00 43.23 29.55 68.60 2.03 45.26 16 4 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.07 16 6 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 7 C -0.55 -30.98 9.50 67.95 0.65 -30.34 16 8 H 0.08 4.25 7.80 -2.91 -0.02 4.23 16 9 S -0.15 -7.92 20.57 -56.49 -1.16 -9.09 16 10 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 11 C 0.54 18.03 7.85 87.66 0.69 18.72 16 12 O -0.56 -23.91 15.86 -3.06 -0.05 -23.96 16 13 N -0.71 -14.78 5.39 -463.05 -2.49 -17.28 16 14 C 0.12 1.83 5.16 86.38 0.45 2.28 16 15 C 0.18 1.65 2.23 44.99 0.10 1.75 16 16 H 0.12 0.79 6.56 -2.39 -0.02 0.77 16 17 N -0.69 -7.57 3.42 -324.16 -1.11 -8.68 16 18 C 0.46 6.42 6.32 133.10 0.84 7.26 16 19 C -0.30 -4.03 9.17 22.62 0.21 -3.82 16 20 C 0.37 6.39 8.50 84.60 0.72 7.11 16 21 F -0.11 -1.99 17.30 44.97 0.78 -1.21 16 22 N -0.61 -11.41 10.45 -201.32 -2.10 -13.51 16 23 C 0.37 5.55 12.28 180.90 2.22 7.77 16 24 N -0.59 -9.56 10.47 -197.70 -2.07 -11.63 16 25 C -0.17 -1.34 5.77 -10.80 -0.06 -1.40 16 26 C -0.17 -1.63 9.62 30.59 0.29 -1.34 16 27 C -0.18 -1.79 9.59 30.59 0.29 -1.49 16 28 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 29 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 30 H 0.11 3.67 8.14 -2.40 -0.02 3.65 16 31 H 0.41 6.70 8.14 -92.71 -0.75 5.94 16 32 H 0.07 1.28 7.10 -2.38 -0.02 1.26 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.47 16 34 H 0.41 5.06 8.76 -92.70 -0.81 4.24 16 35 H 0.17 1.53 6.39 -2.91 -0.02 1.51 16 36 H 0.23 1.80 8.06 -2.91 -0.02 1.78 16 37 H 0.14 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.08 1.05 6.04 -2.39 -0.01 1.03 16 39 H 0.10 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.09 1.05 7.56 -2.39 -0.02 1.03 16 Total: -1.00 -76.55 368.79 0.94 -75.61 By element: Atomic # 1 Polarization: 16.85 SS G_CDS: -0.46 Total: 16.39 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 7.30 Total: 3.23 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -7.49 Total: -106.23 kcal Atomic # 8 Polarization: -23.91 SS G_CDS: -0.05 Total: -23.96 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.78 Total: -1.21 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Atomic # 16 Polarization: -7.92 SS G_CDS: -1.16 Total: -9.09 kcal Total: -76.55 0.94 -75.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096585629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.499 kcal (2) G-P(sol) polarization free energy of solvation -76.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds