Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86796 * 120.00177 * 2 1 4 4 H 1.48505 * 109.47119 * 270.00074 * 3 2 1 5 5 H 1.48498 * 109.47275 * 30.00296 * 3 2 1 6 6 H 1.48504 * 109.46994 * 150.00316 * 3 2 1 7 7 C 1.38805 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00122 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99722 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99623 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46878 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99762 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00021 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00153 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47392 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.46807 * 295.00185 * 15 14 13 17 17 N 1.46504 * 109.47132 * 54.99354 * 15 14 13 18 18 C 1.38564 * 120.00145 * 242.51364 * 17 15 14 19 19 C 1.39460 * 120.51887 * 354.35657 * 18 17 15 20 20 C 1.38464 * 118.31436 * 179.97438 * 19 18 17 21 21 F 1.35102 * 120.43056 * 179.97438 * 20 19 18 22 22 N 1.32783 * 119.14047 * 359.97438 * 20 19 18 23 23 C 1.31758 * 120.96260 * 0.02562 * 22 20 19 24 24 N 1.31759 * 121.85936 * 359.97438 * 23 22 20 25 25 C 1.52998 * 109.47233 * 174.99749 * 15 14 13 26 26 C 1.53004 * 117.49812 * 243.10096 * 25 15 14 27 27 C 1.53000 * 117.49591 * 174.47855 * 25 15 14 28 28 H 0.96996 * 119.99745 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47008 * 60.00509 * 10 9 7 30 30 H 1.08994 * 109.47271 * 299.99722 * 10 9 7 31 31 H 0.97008 * 119.99903 * 359.97438 * 13 11 10 32 32 H 1.08997 * 109.47056 * 59.99842 * 14 13 11 33 33 H 1.09006 * 109.47014 * 299.99614 * 14 13 11 34 34 H 0.97006 * 119.99388 * 62.51249 * 17 15 14 35 35 H 1.08002 * 120.84121 * 0.24770 * 19 18 17 36 36 H 1.08008 * 119.07118 * 180.02562 * 23 22 20 37 37 H 1.08999 * 115.54941 * 28.80927 * 25 15 14 38 38 H 1.08997 * 117.49810 * 0.02562 * 26 25 15 39 39 H 1.08999 * 117.49568 * 145.02624 * 26 25 15 40 40 H 1.09002 * 117.49660 * 214.97384 * 27 25 15 41 41 H 1.09001 * 117.50416 * 0.02562 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0865 -2.9847 -0.0009 11 6 5.5730 -3.2327 -0.0008 12 8 6.3439 -2.2965 -0.0005 13 7 6.0456 -4.4948 -0.0011 14 6 7.4906 -4.7360 -0.0005 15 6 7.7563 -6.2427 -0.0004 16 1 7.3912 -6.6759 0.9308 17 7 7.0613 -6.8612 -1.1321 18 6 6.0685 -7.8010 -0.9057 19 6 5.8023 -8.2527 0.3866 20 6 4.7999 -9.1920 0.5605 21 9 4.5067 -9.6594 1.7937 22 7 4.1306 -9.6274 -0.5004 23 6 4.4082 -9.1791 -1.7079 24 7 5.3536 -8.2857 -1.9177 25 6 9.2600 -6.4955 -0.1254 26 6 9.7507 -7.2360 -1.3712 27 6 9.7448 -7.9423 -0.0139 28 1 -0.4849 0.8400 0.0004 29 1 3.6433 -3.4318 -0.8907 30 1 3.6440 -3.4315 0.8893 31 1 5.4289 -5.2437 -0.0011 32 1 7.9330 -4.2893 0.8899 33 1 7.9340 -4.2886 -0.8901 34 1 7.2961 -6.6128 -2.0399 35 1 6.3608 -7.8762 1.2308 36 1 3.8442 -9.5539 -2.5493 37 1 9.9033 -5.7162 0.2833 38 1 9.0023 -7.5427 -2.1018 39 1 10.7170 -6.9439 -1.7823 40 1 10.7073 -8.1149 0.4677 41 1 8.9925 -8.7142 0.1481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001096585630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = 9.314599 kcal Electronic energy + Delta-G solvation = -26417.123865 eV Core-core repulsion = 22374.484646 eV Total energy + Delta-G solvation = -4042.639219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.49018 -41.42026 -39.78146 -38.76919 -35.93923 -34.62433 -33.06123 -32.45791 -31.54954 -30.21940 -28.49890 -25.65268 -25.14799 -24.05270 -23.62582 -22.77466 -21.10472 -20.31089 -19.25608 -18.55250 -17.95654 -16.84774 -16.71090 -16.53312 -16.49301 -16.20127 -15.92393 -15.46961 -15.17674 -14.97824 -14.91638 -14.58682 -14.32974 -13.91250 -13.77900 -13.49061 -13.15493 -12.86271 -12.78725 -12.29591 -12.03467 -11.91766 -11.67042 -11.29303 -11.22953 -11.02839 -10.91972 -10.64553 -10.54625 -10.25164 -9.88502 -9.86286 -9.63521 -9.14249 -9.01607 -8.81936 -8.54058 -6.94930 -6.30593 -4.02955 0.44565 0.77607 2.25845 2.67956 2.87811 3.01216 3.14765 3.27790 3.31458 3.32703 3.48121 3.58032 3.78012 4.03174 4.12405 4.23388 4.29383 4.31155 4.52300 4.57421 4.70319 4.72130 4.75384 4.87660 5.08298 5.14382 5.16285 5.18801 5.26179 5.38530 5.53596 5.57201 5.62292 5.70650 5.80442 5.96312 6.10840 6.34955 6.57693 6.92620 7.44232 7.68705 7.92465 8.37117 8.40310 9.15246 10.78734 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.002837 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.637798 B = 9868.469272 C =11479.182572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.139 6.139 10 C -0.125 4.125 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.735 5.735 14 C 0.113 3.887 15 C 0.164 3.836 16 H 0.106 0.894 17 N -0.696 5.696 18 C 0.464 3.536 19 C -0.327 4.327 20 C 0.389 3.611 21 F -0.100 7.100 22 N -0.591 5.591 23 C 0.380 3.620 24 N -0.580 5.580 25 C -0.169 4.169 26 C -0.171 4.171 27 C -0.170 4.170 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.396 0.604 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.416 0.584 35 H 0.156 0.844 36 H 0.209 0.791 37 H 0.123 0.877 38 H 0.098 0.902 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.000 -21.133 -1.096 28.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.087 5.913 10 C -0.275 4.275 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.390 5.390 14 C -0.013 4.013 15 C 0.058 3.942 16 H 0.124 0.876 17 N -0.328 5.328 18 C 0.220 3.780 19 C -0.356 4.356 20 C 0.231 3.769 21 F -0.079 7.079 22 N -0.316 5.316 23 C 0.091 3.909 24 N -0.304 5.304 25 C -0.188 4.188 26 C -0.209 4.209 27 C -0.207 4.207 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.230 0.770 32 H 0.103 0.897 33 H 0.094 0.906 34 H 0.255 0.745 35 H 0.173 0.827 36 H 0.225 0.775 37 H 0.141 0.859 38 H 0.116 0.884 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 19.719 -19.702 -1.594 27.920 hybrid contribution -0.685 -0.427 0.581 0.995 sum 19.034 -20.129 -1.013 27.722 Atomic orbital electron populations 1.69938 1.05925 1.27799 1.47954 1.24718 0.94455 0.98969 0.93155 0.86731 0.81876 0.83271 0.79942 1.19187 1.19895 1.15932 1.22312 0.88217 0.97561 1.58911 0.89408 1.84754 1.09376 0.99744 1.97429 1.23276 0.93898 1.04600 1.05757 1.20270 0.90651 0.82083 0.75106 1.90705 1.58734 1.42075 1.47592 1.45868 1.06992 1.08159 1.77985 1.21663 0.82439 0.93433 1.03750 1.20996 0.90612 0.92609 0.89963 0.87623 1.44709 1.36340 1.41418 1.10339 1.18299 0.85808 0.85776 0.88155 1.21867 1.06884 1.07569 0.99303 1.18003 0.89311 0.88762 0.80871 1.91678 1.92121 1.86804 1.37325 1.67883 1.31779 1.32276 0.99663 1.24607 0.88368 0.85705 0.92218 1.68058 1.11196 1.16932 1.34259 1.22621 0.94645 0.96839 1.04728 1.22987 1.02947 1.03596 0.91320 1.22943 1.02965 0.94236 1.00557 0.91902 0.88616 0.88539 0.76988 0.89749 0.90600 0.74549 0.82683 0.77494 0.85883 0.88377 0.88400 0.88351 0.88900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.64 13.97 55.49 0.78 -25.87 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.74 27.74 -169.99 -4.71 17.02 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.28 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.94 6.74 56.52 0.38 -5.56 16 7 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 8 H 0.09 2.66 8.03 -52.49 -0.42 2.24 16 9 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 10 C -0.12 -2.41 6.16 36.01 0.22 -2.19 16 11 C 0.53 9.09 7.85 -10.98 -0.09 9.00 16 12 O -0.52 -10.64 15.86 5.56 0.09 -10.55 16 13 N -0.74 -8.59 5.39 -60.29 -0.32 -8.92 16 14 C 0.11 0.98 5.32 -4.04 -0.02 0.96 16 15 C 0.16 0.94 2.77 -67.93 -0.19 0.75 16 16 H 0.11 0.55 5.35 -51.93 -0.28 0.28 16 17 N -0.70 -4.46 3.45 -53.81 -0.19 -4.64 16 18 C 0.46 3.78 7.29 -154.77 -1.13 2.66 16 19 C -0.33 -2.65 9.38 -39.04 -0.37 -3.01 16 20 C 0.39 3.90 8.50 -17.06 -0.14 3.76 16 21 F -0.10 -1.05 17.30 2.25 0.04 -1.01 16 22 N -0.59 -6.22 10.45 -14.98 -0.16 -6.38 16 23 C 0.38 3.30 12.28 -92.22 -1.13 2.17 16 24 N -0.58 -5.31 10.47 -13.84 -0.14 -5.45 16 25 C -0.17 -0.80 5.74 -90.62 -0.52 -1.32 16 26 C -0.17 -0.83 9.76 -26.73 -0.26 -1.09 16 27 C -0.17 -0.81 10.23 -26.73 -0.27 -1.08 16 28 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 29 H 0.10 1.76 8.14 -51.92 -0.42 1.34 16 30 H 0.10 1.75 8.14 -51.92 -0.42 1.33 16 31 H 0.40 4.12 7.77 -40.82 -0.32 3.81 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.42 2.64 7.83 -40.82 -0.32 2.32 16 35 H 0.16 0.96 5.86 -52.49 -0.31 0.65 16 36 H 0.21 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.12 0.53 8.07 -51.93 -0.42 0.11 16 38 H 0.10 0.52 6.36 -51.93 -0.33 0.18 16 39 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.10 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 367.57 15.07 5.54 5.54 Total: -1.00 -34.76 367.57 -9.70 -44.46 By element: Atomic # 1 Polarization: 7.71 SS G_CDS: -4.93 Total: 2.78 kcal Atomic # 6 Polarization: 2.21 SS G_CDS: -3.69 Total: -1.48 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.04 Total: -51.26 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.09 Total: -10.55 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.04 Total: -1.01 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.71 Total: 17.02 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -34.76 -9.70 -44.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096585630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.771 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.457 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds