Wall clock time and date at job start Sat Apr 11 2020 05:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86796 * 120.00177 * 2 1 4 4 H 1.48505 * 109.47119 * 270.00074 * 3 2 1 5 5 H 1.48498 * 109.47275 * 30.00296 * 3 2 1 6 6 H 1.48504 * 109.46994 * 150.00316 * 3 2 1 7 7 C 1.38805 * 119.99725 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00122 * 359.97438 * 7 2 1 9 9 S 1.76204 * 119.99722 * 179.97438 * 7 2 1 10 10 C 1.81004 * 99.99623 * 179.97438 * 9 7 2 11 11 C 1.50707 * 109.46878 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99762 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00021 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00153 * 180.02562 * 13 11 10 15 15 C 1.53001 * 109.47392 * 179.97438 * 14 13 11 16 16 H 1.08998 * 109.46807 * 295.00185 * 15 14 13 17 17 N 1.46504 * 109.47132 * 54.99354 * 15 14 13 18 18 C 1.38564 * 120.00145 * 242.51364 * 17 15 14 19 19 C 1.39460 * 120.51887 * 354.35657 * 18 17 15 20 20 C 1.38464 * 118.31436 * 179.97438 * 19 18 17 21 21 F 1.35102 * 120.43056 * 179.97438 * 20 19 18 22 22 N 1.32783 * 119.14047 * 359.97438 * 20 19 18 23 23 C 1.31758 * 120.96260 * 0.02562 * 22 20 19 24 24 N 1.31759 * 121.85936 * 359.97438 * 23 22 20 25 25 C 1.52998 * 109.47233 * 174.99749 * 15 14 13 26 26 C 1.53004 * 117.49812 * 243.10096 * 25 15 14 27 27 C 1.53000 * 117.49591 * 174.47855 * 25 15 14 28 28 H 0.96996 * 119.99745 * 359.97438 * 1 2 3 29 29 H 1.08997 * 109.47008 * 60.00509 * 10 9 7 30 30 H 1.08994 * 109.47271 * 299.99722 * 10 9 7 31 31 H 0.97008 * 119.99903 * 359.97438 * 13 11 10 32 32 H 1.08997 * 109.47056 * 59.99842 * 14 13 11 33 33 H 1.09006 * 109.47014 * 299.99614 * 14 13 11 34 34 H 0.97006 * 119.99388 * 62.51249 * 17 15 14 35 35 H 1.08002 * 120.84121 * 0.24770 * 19 18 17 36 36 H 1.08008 * 119.07118 * 180.02562 * 23 22 20 37 37 H 1.08999 * 115.54941 * 28.80927 * 25 15 14 38 38 H 1.08997 * 117.49810 * 0.02562 * 26 25 15 39 39 H 1.08999 * 117.49568 * 145.02624 * 26 25 15 40 40 H 1.09002 * 117.49660 * 214.97384 * 27 25 15 41 41 H 1.09001 * 117.50416 * 0.02562 * 27 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4479 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1373 -0.0005 9 16 3.7723 -1.2021 -0.0012 10 6 4.0865 -2.9847 -0.0009 11 6 5.5730 -3.2327 -0.0008 12 8 6.3439 -2.2965 -0.0005 13 7 6.0456 -4.4948 -0.0011 14 6 7.4906 -4.7360 -0.0005 15 6 7.7563 -6.2427 -0.0004 16 1 7.3912 -6.6759 0.9308 17 7 7.0613 -6.8612 -1.1321 18 6 6.0685 -7.8010 -0.9057 19 6 5.8023 -8.2527 0.3866 20 6 4.7999 -9.1920 0.5605 21 9 4.5067 -9.6594 1.7937 22 7 4.1306 -9.6274 -0.5004 23 6 4.4082 -9.1791 -1.7079 24 7 5.3536 -8.2857 -1.9177 25 6 9.2600 -6.4955 -0.1254 26 6 9.7507 -7.2360 -1.3712 27 6 9.7448 -7.9423 -0.0139 28 1 -0.4849 0.8400 0.0004 29 1 3.6433 -3.4318 -0.8907 30 1 3.6440 -3.4315 0.8893 31 1 5.4289 -5.2437 -0.0011 32 1 7.9330 -4.2893 0.8899 33 1 7.9340 -4.2886 -0.8901 34 1 7.2961 -6.6128 -2.0399 35 1 6.3608 -7.8762 1.2308 36 1 3.8442 -9.5539 -2.5493 37 1 9.9033 -5.7162 0.2833 38 1 9.0023 -7.5427 -2.1018 39 1 10.7170 -6.9439 -1.7823 40 1 10.7073 -8.1149 0.4677 41 1 8.9925 -8.7142 0.1481 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001096585630.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:04 Heat of formation + Delta-G solvation = -13.603951 kcal Electronic energy + Delta-G solvation = -26418.117688 eV Core-core repulsion = 22374.484646 eV Total energy + Delta-G solvation = -4043.633042 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -50.23911 -42.07524 -40.81727 -39.59132 -36.51955 -35.61692 -34.69567 -33.78255 -32.36559 -31.29327 -29.49092 -27.88013 -25.84047 -24.77534 -24.25304 -23.18503 -22.00025 -21.17203 -19.96617 -19.88555 -19.18060 -18.01699 -17.52681 -17.38141 -17.32983 -17.09581 -16.93083 -16.68453 -16.43701 -16.05264 -15.69670 -15.57429 -15.26353 -15.05415 -14.87621 -14.64523 -14.59875 -14.12663 -13.60283 -13.36863 -13.23522 -13.01714 -12.77803 -12.70476 -12.37024 -12.24874 -11.88321 -11.85329 -11.33976 -11.18992 -11.05367 -10.99570 -10.89849 -10.58281 -10.56182 -10.21852 -9.42717 -9.02384 -8.53546 -6.25096 -0.22232 0.10112 0.95676 1.30679 1.44740 1.50182 1.53598 1.67933 2.14196 2.23831 2.34157 2.65099 2.67168 2.84636 2.84700 3.18254 3.45578 3.53595 3.68050 3.76913 3.88220 4.01538 4.09954 4.13804 4.17898 4.22542 4.39954 4.43661 4.54703 4.58832 4.77497 4.81850 5.03228 5.13294 5.24204 5.26992 5.30190 5.49961 5.68226 5.94915 6.08957 6.29935 6.34462 6.91089 7.03459 7.09178 8.59186 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012058 B = 0.002837 C = 0.002439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2321.637798 B = 9868.469272 C =11479.182572 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C 0.045 3.955 3 Si 0.917 3.083 4 H -0.261 1.261 5 H -0.259 1.259 6 H -0.234 1.234 7 C -0.533 4.533 8 H 0.058 0.942 9 S -0.165 6.165 10 C -0.115 4.115 11 C 0.539 3.461 12 O -0.554 6.554 13 N -0.711 5.711 14 C 0.111 3.889 15 C 0.174 3.826 16 H 0.118 0.882 17 N -0.687 5.687 18 C 0.460 3.540 19 C -0.318 4.318 20 C 0.369 3.631 21 F -0.108 7.108 22 N -0.615 5.615 23 C 0.376 3.624 24 N -0.592 5.592 25 C -0.164 4.164 26 C -0.174 4.174 27 C -0.167 4.167 28 H 0.277 0.723 29 H 0.105 0.895 30 H 0.109 0.891 31 H 0.406 0.594 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.418 0.582 35 H 0.175 0.825 36 H 0.235 0.765 37 H 0.133 0.867 38 H 0.093 0.907 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.109 -21.499 -1.092 30.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.161 4.161 3 Si 0.738 3.262 4 H -0.186 1.186 5 H -0.183 1.183 6 H -0.158 1.158 7 C -0.681 4.681 8 H 0.077 0.923 9 S 0.061 5.939 10 C -0.266 4.266 11 C 0.324 3.676 12 O -0.432 6.432 13 N -0.364 5.364 14 C -0.014 4.014 15 C 0.069 3.931 16 H 0.135 0.865 17 N -0.320 5.320 18 C 0.216 3.784 19 C -0.347 4.347 20 C 0.212 3.788 21 F -0.087 7.087 22 N -0.341 5.341 23 C 0.088 3.912 24 N -0.317 5.317 25 C -0.183 4.183 26 C -0.211 4.211 27 C -0.204 4.204 28 H 0.087 0.913 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.241 0.759 32 H 0.108 0.892 33 H 0.092 0.908 34 H 0.257 0.743 35 H 0.193 0.807 36 H 0.251 0.749 37 H 0.151 0.849 38 H 0.112 0.888 39 H 0.122 0.878 40 H 0.125 0.875 41 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 21.839 -20.120 -1.589 29.737 hybrid contribution -1.302 -0.494 0.546 1.496 sum 20.537 -20.614 -1.044 29.117 Atomic orbital electron populations 1.70022 1.07427 1.29121 1.49007 1.25610 0.95298 1.02406 0.92757 0.85838 0.80709 0.79335 0.80304 1.18591 1.18284 1.15806 1.22471 0.90448 0.96611 1.58521 0.92347 1.84601 1.06182 1.05549 1.97563 1.23277 0.96409 1.00031 1.06897 1.19791 0.89126 0.83330 0.75340 1.90697 1.59037 1.43536 1.49953 1.45644 1.08756 1.06460 1.75581 1.21891 0.79962 0.95510 1.03989 1.20948 0.91483 0.90479 0.90182 0.86483 1.44740 1.35712 1.40782 1.10721 1.18426 0.85921 0.85975 0.88107 1.21983 1.06184 1.06688 0.99887 1.18255 0.90222 0.89676 0.80680 1.91653 1.92302 1.87040 1.37736 1.67885 1.32657 1.33206 1.00365 1.25165 0.88326 0.85348 0.92409 1.68111 1.11581 1.17312 1.34686 1.22567 0.93681 0.97262 1.04838 1.23021 1.03149 1.03648 0.91324 1.22960 1.03198 0.93834 1.00456 0.91307 0.87657 0.87309 0.75899 0.89167 0.90806 0.74286 0.80749 0.74947 0.84910 0.88833 0.87850 0.87526 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.23 13.97 21.65 0.30 -55.93 16 2 C 0.04 2.63 5.50 84.86 0.47 3.10 16 3 Si 0.92 44.77 27.74 68.60 1.90 46.67 16 4 H -0.26 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.23 -11.33 6.74 99.48 0.67 -10.66 16 7 C -0.53 -31.21 10.04 67.96 0.68 -30.53 16 8 H 0.06 3.64 8.03 -2.91 -0.02 3.62 16 9 S -0.17 -8.29 18.55 -56.49 -1.05 -9.33 16 10 C -0.12 -4.33 6.16 71.24 0.44 -3.89 16 11 C 0.54 17.46 7.85 87.66 0.69 18.15 16 12 O -0.55 -22.08 15.86 -3.02 -0.05 -22.13 16 13 N -0.71 -14.89 5.39 -463.07 -2.49 -17.39 16 14 C 0.11 1.63 5.32 86.38 0.46 2.09 16 15 C 0.17 1.50 2.77 44.99 0.12 1.63 16 16 H 0.12 0.82 5.35 -2.39 -0.01 0.80 16 17 N -0.69 -7.18 3.45 -324.14 -1.12 -8.30 16 18 C 0.46 6.62 7.29 133.10 0.97 7.59 16 19 C -0.32 -4.57 9.38 22.62 0.21 -4.35 16 20 C 0.37 7.11 8.50 84.60 0.72 7.83 16 21 F -0.11 -2.21 17.30 44.97 0.78 -1.43 16 22 N -0.62 -12.57 10.45 -201.32 -2.10 -14.67 16 23 C 0.38 6.12 12.28 180.91 2.22 8.35 16 24 N -0.59 -9.94 10.47 -197.70 -2.07 -12.01 16 25 C -0.16 -1.09 5.74 -10.79 -0.06 -1.15 16 26 C -0.17 -1.27 9.76 30.60 0.30 -0.97 16 27 C -0.17 -1.17 10.23 30.60 0.31 -0.85 16 28 H 0.28 15.67 8.31 -92.71 -0.77 14.90 16 29 H 0.11 3.76 8.14 -2.40 -0.02 3.74 16 30 H 0.11 3.82 8.14 -2.40 -0.02 3.80 16 31 H 0.41 7.33 7.77 -92.70 -0.72 6.61 16 32 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 34 H 0.42 4.36 7.83 -92.70 -0.73 3.63 16 35 H 0.18 1.68 5.86 -2.91 -0.02 1.66 16 36 H 0.23 2.15 8.06 -2.91 -0.02 2.13 16 37 H 0.13 0.70 8.07 -2.39 -0.02 0.68 16 38 H 0.09 0.79 6.36 -2.39 -0.02 0.77 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -75.51 367.57 1.26 -74.25 By element: Atomic # 1 Polarization: 13.68 SS G_CDS: -0.38 Total: 13.31 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 7.53 Total: 6.98 kcal Atomic # 7 Polarization: -100.83 SS G_CDS: -7.48 Total: -108.31 kcal Atomic # 8 Polarization: -22.08 SS G_CDS: -0.05 Total: -22.13 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 1.90 Total: 46.67 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.05 Total: -9.33 kcal Total: -75.51 1.26 -74.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001096585630.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.650 kcal (2) G-P(sol) polarization free energy of solvation -75.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds