Wall clock time and date at job start Sat Apr 11 2020 05:55:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99733 * 2 1 4 4 H 1.48508 * 109.46729 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47553 * 299.99888 * 3 2 1 6 6 H 1.48503 * 109.47130 * 60.00384 * 3 2 1 7 7 C 1.38814 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99662 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.50235 * 130.84050 * 359.97396 * 9 7 2 11 11 H 1.09008 * 115.85884 * 359.66423 * 10 9 7 12 12 C 1.55845 * 101.05037 * 233.99029 * 10 9 7 13 13 C 1.56687 * 103.59986 * 326.82744 * 12 10 9 14 14 C 1.50238 * 130.83623 * 179.97438 * 9 7 2 15 15 H 1.08998 * 115.86122 * 359.62223 * 14 9 7 16 16 C 1.55845 * 101.05113 * 233.94771 * 14 9 7 17 17 H 1.09002 * 110.62563 * 208.57353 * 16 14 9 18 18 N 1.46501 * 110.62758 * 85.70958 * 16 14 9 19 19 C 1.34773 * 119.99700 * 157.19557 * 18 16 14 20 20 O 1.21600 * 120.00254 * 0.02562 * 19 18 16 21 21 C 1.47432 * 119.99706 * 180.02562 * 19 18 16 22 22 C 1.39973 * 120.16319 * 89.72823 * 21 19 18 23 23 F 1.35103 * 120.08314 * 359.97438 * 22 21 19 24 24 C 1.38102 * 119.83456 * 179.74169 * 22 21 19 25 25 C 1.38597 * 120.15894 * 0.51223 * 24 22 21 26 26 F 1.35100 * 119.83146 * 179.74104 * 25 24 22 27 27 C 1.38592 * 120.33370 * 359.76416 * 25 24 22 28 28 C 1.38095 * 120.16612 * 359.97438 * 27 25 24 29 29 F 1.35104 * 120.08661 * 179.97438 * 28 27 25 30 30 C 1.54850 * 103.44461 * 327.06302 * 16 14 9 31 31 H 0.97000 * 120.00035 * 359.97438 * 1 2 3 32 32 H 1.08991 * 110.62951 * 85.55141 * 12 10 9 33 33 H 1.09001 * 110.62124 * 208.41482 * 12 10 9 34 34 H 1.08992 * 111.43982 * 241.94361 * 13 12 10 35 35 H 1.09000 * 110.61636 * 118.35209 * 13 12 10 36 36 H 0.97005 * 120.00062 * 337.20599 * 18 16 14 37 37 H 1.07998 * 119.91959 * 180.25689 * 24 22 21 38 38 H 1.08008 * 119.91756 * 179.97438 * 27 25 24 39 39 H 1.09000 * 110.62764 * 118.48997 * 30 16 14 40 40 H 1.09004 * 110.62799 * 241.50544 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1500 -2.6706 -0.0018 11 1 -0.8014 -1.7966 0.0047 12 6 -0.2742 -3.6111 1.2346 13 6 1.0789 -4.4010 1.2341 14 6 1.8187 -3.8072 -0.0029 15 1 2.9012 -3.9343 -0.0094 16 6 1.0665 -4.3837 -1.2400 17 1 0.8926 -5.4530 -1.1196 18 7 1.8175 -4.1198 -2.4698 19 6 1.6196 -4.8893 -3.5585 20 8 0.8174 -5.8023 -3.5201 21 6 2.3759 -4.6240 -4.7960 22 6 3.6120 -5.2443 -5.0114 23 9 4.1168 -6.0883 -4.0850 24 6 4.3122 -4.9951 -6.1754 25 6 3.7986 -4.1251 -7.1242 26 9 4.4916 -3.8820 -8.2582 27 6 2.5780 -3.5028 -6.9153 28 6 1.8639 -3.7463 -5.7586 29 9 0.6744 -3.1384 -5.5564 30 6 -0.2746 -3.6095 -1.2389 31 1 -0.4850 0.8400 0.0004 32 1 -0.3816 -3.0296 2.1501 33 1 -1.1149 -4.2943 1.1142 34 1 0.9156 -5.4710 1.1064 35 1 1.6391 -4.2033 2.1481 36 1 2.4574 -3.3913 -2.5006 37 1 5.2641 -5.4761 -6.3449 38 1 2.1842 -2.8257 -7.6590 39 1 -0.3822 -3.0267 -2.1537 40 1 -1.1136 -4.2948 -1.1182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001097761283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:17 Heat of formation + Delta-G solvation = -93.731932 kcal Electronic energy + Delta-G solvation = -30044.315839 eV Core-core repulsion = 25411.075049 eV Total energy + Delta-G solvation = -4633.240790 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.52738 -49.43266 -49.33467 -40.05371 -38.96196 -37.91940 -33.90440 -32.57321 -31.29459 -31.05183 -29.12528 -28.80576 -27.73276 -24.51726 -24.08858 -23.58864 -21.72094 -20.27167 -19.86043 -18.99506 -18.79634 -18.25518 -17.71837 -17.03893 -16.72713 -16.34078 -16.29887 -16.00532 -15.67032 -15.60267 -15.42506 -14.86862 -14.74788 -14.40705 -14.25054 -13.83484 -13.58927 -13.15642 -12.73795 -12.67450 -12.36419 -12.09445 -12.02411 -11.87289 -11.29280 -11.15774 -10.96878 -10.94613 -10.57239 -10.39092 -10.12679 -10.07300 -9.90860 -9.36940 -9.34158 -9.28555 -9.20416 -9.01437 -8.60344 -6.99353 -5.78515 -3.17913 0.21589 0.40224 2.54895 2.63873 3.04960 3.31547 3.33249 3.38475 3.41373 3.72610 3.77692 4.28502 4.33635 4.36900 4.57636 5.07616 5.18387 5.20948 5.27438 5.29844 5.32766 5.45490 5.59756 5.63208 5.82533 6.00318 6.04346 6.12271 6.17124 6.23741 6.36756 6.44584 6.54300 6.68158 6.79017 6.90014 7.01444 7.27959 7.43226 7.74288 7.77607 8.13128 8.33826 9.03212 9.66484 10.47064 11.30539 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.003994 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.500069 B = 7008.129561 C = 8185.221308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.009 4.009 3 Si 0.914 3.086 4 H -0.281 1.281 5 H -0.291 1.291 6 H -0.291 1.291 7 C -0.216 4.216 8 H 0.079 0.921 9 N -0.591 5.591 10 C 0.154 3.846 11 H 0.154 0.846 12 C -0.138 4.138 13 C -0.129 4.129 14 C 0.126 3.874 15 H 0.088 0.912 16 C 0.126 3.874 17 H 0.082 0.918 18 N -0.687 5.687 19 C 0.561 3.439 20 O -0.529 6.529 21 C -0.203 4.203 22 C 0.195 3.805 23 F -0.111 7.111 24 C -0.205 4.205 25 C 0.175 3.825 26 F -0.119 7.119 27 C -0.203 4.203 28 C 0.200 3.800 29 F -0.106 7.106 30 C -0.142 4.142 31 H 0.254 0.746 32 H 0.056 0.944 33 H 0.048 0.952 34 H 0.054 0.946 35 H 0.058 0.942 36 H 0.405 0.595 37 H 0.162 0.838 38 H 0.163 0.837 39 H 0.061 0.939 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.603 -9.018 -11.334 15.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.205 4.205 3 Si 0.745 3.255 4 H -0.206 1.206 5 H -0.218 1.218 6 H -0.218 1.218 7 C -0.343 4.343 8 H 0.097 0.903 9 N -0.311 5.311 10 C 0.047 3.953 11 H 0.171 0.829 12 C -0.177 4.177 13 C -0.169 4.169 14 C 0.017 3.983 15 H 0.106 0.894 16 C 0.020 3.980 17 H 0.100 0.900 18 N -0.335 5.335 19 C 0.344 3.656 20 O -0.406 6.406 21 C -0.209 4.209 22 C 0.175 3.825 23 F -0.089 7.089 24 C -0.224 4.224 25 C 0.155 3.845 26 F -0.097 7.097 27 C -0.223 4.223 28 C 0.179 3.821 29 F -0.084 7.084 30 C -0.183 4.183 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.077 0.923 36 H 0.240 0.760 37 H 0.179 0.821 38 H 0.180 0.820 39 H 0.079 0.921 40 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.055 -9.311 -11.257 15.814 hybrid contribution 0.795 1.177 -0.091 1.423 sum 6.850 -8.135 -11.348 15.553 Atomic orbital electron populations 1.69465 1.05003 1.24929 1.57169 1.24700 0.95587 0.97483 1.02694 0.86011 0.78582 0.83646 0.77287 1.20595 1.21806 1.21755 1.19039 0.90223 0.81852 1.43229 0.90341 1.46542 1.01674 0.98555 1.84360 1.23766 0.87400 0.95314 0.88804 0.82893 1.23380 0.95072 0.98092 1.01190 1.23198 0.97763 0.97550 0.98410 1.23144 0.96071 0.86994 0.92073 0.89445 1.22778 0.93054 0.98846 0.83280 0.90012 1.46026 1.42821 1.33006 1.11691 1.17570 0.82481 0.82942 0.82653 1.90811 1.35372 1.31111 1.83305 1.20158 0.97341 1.03928 0.99443 1.16756 0.89972 0.89168 0.86649 1.91616 1.86244 1.67300 1.63728 1.20960 1.03899 1.03858 0.93705 1.16880 0.89666 0.95080 0.82865 1.91583 1.78074 1.92614 1.47466 1.21010 0.95762 1.06061 0.99461 1.16808 0.82036 0.90811 0.92418 1.91659 1.41871 1.80159 1.94707 1.23448 0.94731 0.98402 1.01698 0.93536 0.92562 0.93308 0.92738 0.92318 0.75967 0.82075 0.81985 0.92073 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -25.39 10.46 55.49 0.58 -24.81 16 2 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 3 Si 0.91 21.14 29.55 -169.99 -5.02 16.11 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 7 C -0.22 -5.53 10.59 -15.06 -0.16 -5.69 16 8 H 0.08 1.95 7.83 -52.49 -0.41 1.54 16 9 N -0.59 -13.74 2.99 -145.82 -0.44 -14.18 16 10 C 0.15 3.45 4.72 -62.82 -0.30 3.15 16 11 H 0.15 3.95 5.52 -51.92 -0.29 3.67 16 12 C -0.14 -2.68 6.49 -23.22 -0.15 -2.83 16 13 C -0.13 -2.30 6.58 -23.20 -0.15 -2.45 16 14 C 0.13 2.41 5.00 -62.78 -0.31 2.09 16 15 H 0.09 1.57 8.14 -51.93 -0.42 1.15 16 16 C 0.13 2.35 2.76 -65.44 -0.18 2.16 16 17 H 0.08 1.51 7.27 -51.93 -0.38 1.13 16 18 N -0.69 -12.01 5.09 -52.47 -0.27 -12.28 16 19 C 0.56 9.74 6.53 -12.52 -0.08 9.66 16 20 O -0.53 -10.79 16.79 5.28 0.09 -10.70 16 21 C -0.20 -2.84 5.64 -104.85 -0.59 -3.44 16 22 C 0.20 2.29 7.29 -38.98 -0.28 2.01 16 23 F -0.11 -1.40 16.83 2.25 0.04 -1.37 16 24 C -0.20 -1.84 9.99 -39.50 -0.39 -2.24 16 25 C 0.18 1.58 7.30 -39.32 -0.29 1.30 16 26 F -0.12 -1.05 17.26 2.25 0.04 -1.01 16 27 C -0.20 -1.97 9.98 -39.50 -0.39 -2.37 16 28 C 0.20 2.55 7.29 -38.98 -0.28 2.27 16 29 F -0.11 -1.58 16.83 2.25 0.04 -1.54 16 30 C -0.14 -2.90 6.23 -24.26 -0.15 -3.05 16 31 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.05 0.85 7.82 -51.93 -0.41 0.44 16 34 H 0.05 0.85 7.81 -51.93 -0.41 0.45 16 35 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.41 6.87 8.62 -40.82 -0.35 6.52 16 37 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 38 H 0.16 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.06 1.36 7.98 -51.93 -0.41 0.94 16 40 H 0.06 1.06 7.82 -51.93 -0.41 0.66 16 LS Contribution 348.52 15.07 5.25 5.25 Total: -1.00 -29.45 348.52 -7.82 -37.27 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -4.31 Total: 6.99 kcal Atomic # 6 Polarization: 4.07 SS G_CDS: -3.82 Total: 0.26 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: -0.12 Total: -51.27 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 9 Polarization: -4.03 SS G_CDS: 0.11 Total: -3.92 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -29.45 -7.82 -37.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097761283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.464 kcal (2) G-P(sol) polarization free energy of solvation -29.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds