Wall clock time and date at job start Sat Apr 11 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99733 * 2 1 4 4 H 1.48508 * 109.46729 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47553 * 299.99888 * 3 2 1 6 6 H 1.48503 * 109.47130 * 60.00384 * 3 2 1 7 7 C 1.38814 * 119.99982 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99662 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99857 * 0.02562 * 7 2 1 10 10 C 1.50235 * 130.84050 * 359.97396 * 9 7 2 11 11 H 1.09008 * 115.85884 * 359.66423 * 10 9 7 12 12 C 1.55845 * 101.05037 * 233.99029 * 10 9 7 13 13 C 1.56687 * 103.59986 * 326.82744 * 12 10 9 14 14 C 1.50238 * 130.83623 * 179.97438 * 9 7 2 15 15 H 1.08998 * 115.86122 * 359.62223 * 14 9 7 16 16 C 1.55845 * 101.05113 * 233.94771 * 14 9 7 17 17 H 1.09002 * 110.62563 * 208.57353 * 16 14 9 18 18 N 1.46501 * 110.62758 * 85.70958 * 16 14 9 19 19 C 1.34773 * 119.99700 * 157.19557 * 18 16 14 20 20 O 1.21600 * 120.00254 * 0.02562 * 19 18 16 21 21 C 1.47432 * 119.99706 * 180.02562 * 19 18 16 22 22 C 1.39973 * 120.16319 * 89.72823 * 21 19 18 23 23 F 1.35103 * 120.08314 * 359.97438 * 22 21 19 24 24 C 1.38102 * 119.83456 * 179.74169 * 22 21 19 25 25 C 1.38597 * 120.15894 * 0.51223 * 24 22 21 26 26 F 1.35100 * 119.83146 * 179.74104 * 25 24 22 27 27 C 1.38592 * 120.33370 * 359.76416 * 25 24 22 28 28 C 1.38095 * 120.16612 * 359.97438 * 27 25 24 29 29 F 1.35104 * 120.08661 * 179.97438 * 28 27 25 30 30 C 1.54850 * 103.44461 * 327.06302 * 16 14 9 31 31 H 0.97000 * 120.00035 * 359.97438 * 1 2 3 32 32 H 1.08991 * 110.62951 * 85.55141 * 12 10 9 33 33 H 1.09001 * 110.62124 * 208.41482 * 12 10 9 34 34 H 1.08992 * 111.43982 * 241.94361 * 13 12 10 35 35 H 1.09000 * 110.61636 * 118.35209 * 13 12 10 36 36 H 0.97005 * 120.00062 * 337.20599 * 18 16 14 37 37 H 1.07998 * 119.91959 * 180.25689 * 24 22 21 38 38 H 1.08008 * 119.91756 * 179.97438 * 27 25 24 39 39 H 1.09000 * 110.62764 * 118.48997 * 30 16 14 40 40 H 1.09004 * 110.62799 * 241.50544 * 30 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3965 -1.2125 6 1 1.8914 2.3965 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 7 1.3256 -2.3880 -0.0016 10 6 -0.1500 -2.6706 -0.0018 11 1 -0.8014 -1.7966 0.0047 12 6 -0.2742 -3.6111 1.2346 13 6 1.0789 -4.4010 1.2341 14 6 1.8187 -3.8072 -0.0029 15 1 2.9012 -3.9343 -0.0094 16 6 1.0665 -4.3837 -1.2400 17 1 0.8926 -5.4530 -1.1196 18 7 1.8175 -4.1198 -2.4698 19 6 1.6196 -4.8893 -3.5585 20 8 0.8174 -5.8023 -3.5201 21 6 2.3759 -4.6240 -4.7960 22 6 3.6120 -5.2443 -5.0114 23 9 4.1168 -6.0883 -4.0850 24 6 4.3122 -4.9951 -6.1754 25 6 3.7986 -4.1251 -7.1242 26 9 4.4916 -3.8820 -8.2582 27 6 2.5780 -3.5028 -6.9153 28 6 1.8639 -3.7463 -5.7586 29 9 0.6744 -3.1384 -5.5564 30 6 -0.2746 -3.6095 -1.2389 31 1 -0.4850 0.8400 0.0004 32 1 -0.3816 -3.0296 2.1501 33 1 -1.1149 -4.2943 1.1142 34 1 0.9156 -5.4710 1.1064 35 1 1.6391 -4.2033 2.1481 36 1 2.4574 -3.3913 -2.5006 37 1 5.2641 -5.4761 -6.3449 38 1 2.1842 -2.8257 -7.6590 39 1 -0.3822 -3.0267 -2.1537 40 1 -1.1136 -4.2948 -1.1182 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001097761283.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:16 Heat of formation + Delta-G solvation = -110.218509 kcal Electronic energy + Delta-G solvation = -30045.030751 eV Core-core repulsion = 25411.075049 eV Total energy + Delta-G solvation = -4633.955702 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.39260 -50.35958 -50.25904 -41.46654 -40.27592 -39.11133 -35.43222 -34.43275 -32.32355 -31.89221 -30.96155 -30.36865 -29.26530 -26.18688 -25.35549 -24.46121 -23.07611 -21.64128 -21.57272 -20.42927 -19.87486 -19.17472 -18.97489 -18.84341 -17.79217 -17.27664 -17.22610 -17.14698 -16.79154 -16.64671 -16.53509 -16.44091 -15.90346 -15.74028 -15.52669 -15.37126 -15.11718 -14.63778 -13.90735 -13.75812 -13.69186 -13.55681 -13.16378 -12.94587 -12.92413 -12.89767 -12.79213 -12.70421 -12.13091 -11.95660 -11.89209 -11.72916 -11.47046 -11.05360 -10.96843 -10.79825 -10.21411 -10.18516 -10.12547 -8.88625 -7.76343 -5.16469 -0.68203 -0.43553 1.22033 1.48316 1.49411 1.58146 1.76343 2.03311 2.20763 2.49649 2.85850 2.91810 3.31670 3.37331 3.43638 3.47289 3.59987 3.96961 4.03694 4.24037 4.33193 4.35838 4.38133 4.41913 4.42504 4.46461 4.60796 4.64493 4.70495 4.81176 4.87742 5.03305 5.14373 5.16325 5.34618 5.36554 5.45528 5.53913 5.66047 5.88335 6.26070 6.36499 6.95498 7.05643 7.72007 8.57412 9.31218 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011608 B = 0.003994 C = 0.003420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2411.500069 B = 7008.129561 C = 8185.221308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.947 5.947 2 C -0.066 4.066 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.298 1.298 6 H -0.299 1.299 7 C -0.214 4.214 8 H 0.086 0.914 9 N -0.610 5.610 10 C 0.140 3.860 11 H 0.117 0.883 12 C -0.131 4.131 13 C -0.119 4.119 14 C 0.128 3.872 15 H 0.103 0.897 16 C 0.136 3.864 17 H 0.090 0.910 18 N -0.687 5.687 19 C 0.562 3.438 20 O -0.565 6.565 21 C -0.225 4.225 22 C 0.189 3.811 23 F -0.118 7.118 24 C -0.180 4.180 25 C 0.188 3.812 26 F -0.110 7.110 27 C -0.186 4.186 28 C 0.180 3.820 29 F -0.127 7.127 30 C -0.133 4.133 31 H 0.245 0.755 32 H 0.039 0.961 33 H 0.070 0.930 34 H 0.085 0.915 35 H 0.062 0.938 36 H 0.407 0.593 37 H 0.194 0.806 38 H 0.186 0.814 39 H 0.032 0.968 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.978 -10.248 -12.543 18.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.597 5.597 2 C -0.258 4.258 3 Si 0.802 3.198 4 H -0.189 1.189 5 H -0.226 1.226 6 H -0.226 1.226 7 C -0.342 4.342 8 H 0.104 0.896 9 N -0.331 5.331 10 C 0.033 3.967 11 H 0.134 0.866 12 C -0.171 4.171 13 C -0.159 4.159 14 C 0.021 3.979 15 H 0.121 0.879 16 C 0.029 3.971 17 H 0.108 0.892 18 N -0.335 5.335 19 C 0.347 3.653 20 O -0.444 6.444 21 C -0.230 4.230 22 C 0.169 3.831 23 F -0.096 7.096 24 C -0.200 4.200 25 C 0.168 3.832 26 F -0.088 7.088 27 C -0.205 4.205 28 C 0.159 3.841 29 F -0.105 7.105 30 C -0.173 4.173 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.103 0.897 35 H 0.081 0.919 36 H 0.243 0.757 37 H 0.212 0.788 38 H 0.204 0.796 39 H 0.051 0.949 40 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.466 -10.567 -12.470 18.408 hybrid contribution 0.091 1.515 0.198 1.531 sum 8.557 -9.052 -12.272 17.486 Atomic orbital electron populations 1.69719 1.06223 1.24719 1.59057 1.25417 0.96292 1.00317 1.03822 0.85086 0.78309 0.80140 0.76256 1.18948 1.22601 1.22620 1.19384 0.90767 0.82891 1.41205 0.89616 1.46726 1.02249 0.99639 1.84532 1.23591 0.86813 0.95126 0.91128 0.86596 1.23268 0.97212 0.97849 0.98739 1.23160 0.96142 0.98875 0.97700 1.23347 0.97137 0.84680 0.92781 0.87916 1.22614 0.91981 0.98750 0.83711 0.89162 1.46016 1.42650 1.33135 1.11705 1.18021 0.81954 0.81950 0.83394 1.90775 1.36989 1.32566 1.84098 1.19990 0.98520 1.06051 0.98435 1.16806 0.89536 0.89285 0.87495 1.91598 1.86212 1.67565 1.64223 1.21205 1.04308 1.02547 0.91897 1.16812 0.89160 0.94356 0.82857 1.91620 1.77769 1.92439 1.47000 1.21188 0.95424 1.05508 0.98429 1.16993 0.81999 0.91553 0.93522 1.91607 1.43212 1.80694 1.94978 1.23306 0.96548 0.98047 0.99421 0.94510 0.94176 0.91104 0.89691 0.91905 0.75721 0.78842 0.79630 0.94897 0.91345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -54.44 10.46 21.65 0.23 -54.21 16 2 C -0.07 -3.55 5.50 84.86 0.47 -3.08 16 3 Si 0.97 44.10 29.55 68.60 2.03 46.13 16 4 H -0.27 -11.19 7.11 99.48 0.71 -10.49 16 5 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 6 H -0.30 -13.81 7.11 99.48 0.71 -13.10 16 7 C -0.21 -11.01 10.59 84.03 0.89 -10.12 16 8 H 0.09 4.18 7.83 -2.91 -0.02 4.16 16 9 N -0.61 -28.47 2.99 -615.24 -1.84 -30.31 16 10 C 0.14 6.41 4.72 46.21 0.22 6.63 16 11 H 0.12 6.30 5.52 -2.38 -0.01 6.29 16 12 C -0.13 -5.02 6.49 32.87 0.21 -4.81 16 13 C -0.12 -3.96 6.58 32.88 0.22 -3.75 16 14 C 0.13 4.71 5.00 46.24 0.23 4.94 16 15 H 0.10 3.47 8.14 -2.39 -0.02 3.45 16 16 C 0.14 4.94 2.76 46.61 0.13 5.07 16 17 H 0.09 3.19 7.27 -2.39 -0.02 3.17 16 18 N -0.69 -23.96 5.09 -438.17 -2.23 -26.19 16 19 C 0.56 19.58 6.53 86.67 0.57 20.15 16 20 O -0.56 -23.22 16.79 -4.03 -0.07 -23.29 16 21 C -0.22 -6.15 5.64 -20.01 -0.11 -6.27 16 22 C 0.19 4.09 7.29 22.66 0.17 4.26 16 23 F -0.12 -2.79 16.83 44.97 0.76 -2.03 16 24 C -0.18 -2.62 9.99 22.32 0.22 -2.40 16 25 C 0.19 2.75 7.30 22.44 0.16 2.91 16 26 F -0.11 -1.49 17.26 44.97 0.78 -0.71 16 27 C -0.19 -3.17 9.98 22.32 0.22 -2.94 16 28 C 0.18 4.48 7.29 22.66 0.17 4.64 16 29 F -0.13 -3.87 16.83 44.97 0.76 -3.11 16 30 C -0.13 -5.49 6.23 32.20 0.20 -5.29 16 31 H 0.25 13.88 8.31 -92.71 -0.77 13.11 16 32 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 33 H 0.07 2.36 7.82 -2.39 -0.02 2.35 16 34 H 0.08 2.35 7.81 -2.39 -0.02 2.33 16 35 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.41 13.80 8.62 -92.70 -0.80 13.00 16 37 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 38 H 0.19 2.23 8.06 -2.91 -0.02 2.20 16 39 H 0.03 1.51 7.98 -2.39 -0.02 1.49 16 40 H 0.07 2.60 7.82 -2.38 -0.02 2.58 16 Total: -1.00 -65.77 348.52 4.68 -61.09 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.32 Total: 22.68 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: 3.96 Total: 9.95 kcal Atomic # 7 Polarization: -106.86 SS G_CDS: -3.85 Total: -110.71 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.07 Total: -23.29 kcal Atomic # 9 Polarization: -8.14 SS G_CDS: 2.29 Total: -5.85 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -65.77 4.68 -61.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001097761283.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.127 kcal (2) G-P(sol) polarization free energy of solvation -65.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds