Wall clock time and date at job start Sat Apr 11 2020 05:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86802 * 119.99901 * 2 1 4 4 H 1.48498 * 109.46664 * 270.00085 * 3 2 1 5 5 H 1.48499 * 109.46946 * 29.99776 * 3 2 1 6 6 H 1.48494 * 109.47338 * 149.99850 * 3 2 1 7 7 C 1.38796 * 120.00089 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00009 * 359.97438 * 7 2 1 9 9 S 1.76203 * 119.99798 * 180.02562 * 7 2 1 10 10 C 1.81000 * 99.99835 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47399 * 179.97438 * 10 9 7 12 12 O 1.21282 * 119.99710 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00244 * 179.97438 * 11 10 9 14 14 C 1.47021 * 125.64913 * 0.04636 * 13 11 10 15 15 C 1.54368 * 107.28815 * 178.87166 * 14 13 11 16 16 C 1.55158 * 102.92311 * 337.85914 * 15 14 13 17 17 H 1.08993 * 111.00186 * 277.36642 * 16 15 14 18 18 C 1.52996 * 111.00707 * 153.54619 * 16 15 14 19 19 N 1.46498 * 109.47059 * 178.17913 * 18 16 15 20 20 C 1.38539 * 119.99613 * 179.72369 * 19 18 16 21 21 N 1.32451 * 119.19334 * 0.02562 * 20 19 18 22 22 C 1.32299 * 120.76623 * 179.75904 * 21 20 19 23 23 C 1.38775 * 119.17031 * 0.50314 * 22 21 20 24 24 F 1.35100 * 120.74954 * 179.72752 * 23 22 21 25 25 C 1.38782 * 118.50906 * 359.75176 * 23 22 21 26 26 N 1.32299 * 119.16791 * 359.97438 * 25 23 22 27 27 C 1.47428 * 125.64464 * 180.02562 * 13 11 10 28 28 H 0.96999 * 120.00442 * 0.02562 * 1 2 3 29 29 H 1.09007 * 109.47385 * 59.99696 * 10 9 7 30 30 H 1.09005 * 109.47218 * 300.00084 * 10 9 7 31 31 H 1.09006 * 109.87772 * 298.31903 * 14 13 11 32 32 H 1.08995 * 109.88061 * 59.32700 * 14 13 11 33 33 H 1.08996 * 110.75331 * 219.49004 * 15 14 13 34 34 H 1.08998 * 110.70807 * 96.20440 * 15 14 13 35 35 H 1.09004 * 109.47066 * 58.18181 * 18 16 15 36 36 H 1.08994 * 109.46974 * 298.18329 * 18 16 15 37 37 H 0.97001 * 120.00384 * 0.02562 * 19 18 16 38 38 H 1.08003 * 120.41120 * 180.23065 * 22 21 20 39 39 H 1.07998 * 120.41747 * 179.97438 * 25 23 22 40 40 H 1.09001 * 110.36624 * 85.33148 * 27 13 11 41 41 H 1.08995 * 110.36860 * 322.99904 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4476 2.6527 0.7000 6 1 3.5478 1.4403 0.7000 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2019 0.0012 10 6 4.0866 -2.9844 0.0025 11 6 5.5731 -3.2324 0.0026 12 8 6.3440 -2.2962 0.0024 13 7 6.0457 -4.4946 0.0041 14 6 5.2274 -5.7160 0.0047 15 6 6.1964 -6.9174 -0.0226 16 6 7.4954 -6.3022 -0.6070 17 1 7.4528 -6.2607 -1.6953 18 6 8.7284 -7.0775 -0.1384 19 7 9.9295 -6.4963 -0.7431 20 6 11.1757 -7.0311 -0.4596 21 7 11.2625 -8.0681 0.3598 22 6 12.4362 -8.6064 0.6482 23 6 13.5847 -8.0643 0.0888 24 9 14.8001 -8.5852 0.3659 25 6 13.4569 -6.9747 -0.7612 26 7 12.2516 -6.4897 -1.0109 27 6 7.4690 -4.8790 0.0049 28 1 -0.4851 0.8400 -0.0004 29 1 3.6440 -3.4321 -0.8873 30 1 3.6433 -3.4309 0.8927 31 1 4.6165 -5.7524 0.9068 32 1 4.5872 -5.7337 -0.8773 33 1 5.8164 -7.7053 -0.6729 34 1 6.3685 -7.2967 0.9846 35 1 8.6380 -8.1209 -0.4406 36 1 8.8034 -7.0189 0.9474 37 1 9.8528 -5.7344 -1.3384 38 1 12.4999 -9.4542 1.3142 39 1 14.3303 -6.5284 -1.2131 40 1 7.8566 -4.8966 1.0235 41 1 8.0482 -4.1908 -0.6106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098507486.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:28 Heat of formation + Delta-G solvation = -18.923834 kcal Electronic energy + Delta-G solvation = -25376.260614 eV Core-core repulsion = 21332.396884 eV Total energy + Delta-G solvation = -4043.863730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.30046 -41.39429 -40.05647 -37.91580 -36.11286 -34.31449 -32.70963 -32.45493 -30.64100 -29.79116 -28.77167 -26.13817 -25.62203 -25.18103 -23.73159 -22.81161 -20.99536 -19.55396 -18.85701 -18.39900 -17.86312 -17.69242 -16.81667 -16.71309 -16.47111 -15.59937 -15.42713 -15.16657 -15.09440 -14.91262 -14.56670 -14.45867 -14.04930 -13.88920 -13.55943 -13.47914 -13.00718 -12.87397 -12.74891 -12.45951 -12.26115 -11.97614 -11.67143 -11.48474 -11.46928 -11.27741 -11.14454 -11.02132 -10.67666 -10.60113 -9.87649 -9.64514 -9.58175 -9.02091 -8.65614 -8.52257 -8.49802 -6.94483 -6.30677 -4.02802 0.47645 0.48433 2.28492 2.64311 2.89171 3.15751 3.24327 3.31933 3.49362 3.49574 3.54989 3.58453 3.97710 4.13498 4.14758 4.31625 4.32395 4.33651 4.45170 4.66729 4.80431 4.89263 4.98754 5.08089 5.08414 5.13784 5.23955 5.29070 5.42574 5.50358 5.58374 5.61500 5.73416 5.80200 5.83509 5.98224 6.14555 6.26012 6.46496 6.86930 7.50521 7.70667 7.92280 8.37803 8.39626 9.15466 10.78463 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029524 B = 0.001751 C = 0.001673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.154132 B =15987.227331 C =16736.874109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.143 6.143 10 C -0.118 4.118 11 C 0.547 3.453 12 O -0.517 6.517 13 N -0.626 5.626 14 C 0.100 3.900 15 C -0.119 4.119 16 C -0.119 4.119 17 H 0.095 0.905 18 C 0.149 3.851 19 N -0.692 5.692 20 C 0.559 3.441 21 N -0.544 5.544 22 C 0.175 3.825 23 C -0.078 4.078 24 F -0.128 7.128 25 C 0.177 3.823 26 N -0.546 5.546 27 C 0.113 3.887 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.075 0.925 37 H 0.418 0.582 38 H 0.179 0.821 39 H 0.179 0.821 40 H 0.068 0.932 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.450 -22.273 -0.453 32.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.268 4.268 11 C 0.335 3.665 12 O -0.391 6.391 13 N -0.363 5.363 14 C -0.023 4.023 15 C -0.157 4.157 16 C -0.138 4.138 17 H 0.113 0.887 18 C 0.024 3.976 19 N -0.328 5.328 20 C 0.202 3.798 21 N -0.266 5.266 22 C 0.006 3.994 23 C -0.106 4.106 24 F -0.107 7.107 25 C 0.007 3.993 26 N -0.268 5.268 27 C -0.010 4.010 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.257 0.743 38 H 0.196 0.804 39 H 0.196 0.804 40 H 0.086 0.914 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 23.269 -20.367 -0.562 30.929 hybrid contribution 0.184 -0.522 -0.016 0.553 sum 23.453 -20.889 -0.578 31.412 Atomic orbital electron populations 1.69933 1.05897 1.27785 1.48007 1.24705 0.94450 0.98952 0.93149 0.86739 0.81906 0.83287 0.79955 1.19189 1.19906 1.15933 1.22301 0.88177 0.97548 1.58872 0.89375 1.84805 1.09391 1.00005 1.97426 1.23256 0.93590 1.04264 1.05696 1.20009 0.90613 0.80610 0.75225 1.90713 1.58890 1.41203 1.48342 1.48447 1.06844 1.05380 1.75637 1.22046 0.94159 0.83497 1.02640 1.22612 0.93507 0.97199 1.02393 1.22676 0.94406 0.95098 1.01650 0.88696 1.21322 0.80909 0.97056 0.98282 1.44240 1.01332 1.35740 1.51529 1.19382 0.86751 0.86585 0.87063 1.67993 1.27314 1.12783 1.18546 1.23130 0.85489 0.96785 0.94042 1.19124 0.82756 1.01363 1.07371 1.91518 1.40544 1.85867 1.92786 1.23125 0.95369 0.89925 0.90913 1.67978 0.97942 1.32782 1.28062 1.22215 0.83490 0.94392 1.00941 0.91922 0.88560 0.88508 0.90855 0.90921 0.89378 0.89886 0.90558 0.90701 0.74339 0.80437 0.80416 0.91390 0.90403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.43 13.97 55.49 0.78 -25.65 16 2 C 0.10 2.81 5.50 -17.43 -0.10 2.71 16 3 Si 0.86 21.77 27.74 -169.99 -4.72 17.05 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 6 H -0.24 -5.99 6.74 56.52 0.38 -5.61 16 7 C -0.52 -14.98 10.04 30.94 0.31 -14.67 16 8 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 9 S -0.14 -3.63 18.55 -107.50 -1.99 -5.62 16 10 C -0.12 -2.29 5.35 36.00 0.19 -2.10 16 11 C 0.55 9.91 7.87 -10.99 -0.09 9.82 16 12 O -0.52 -11.35 16.12 5.56 0.09 -11.26 16 13 N -0.63 -8.14 3.33 -170.47 -0.57 -8.71 16 14 C 0.10 0.91 6.49 -3.04 -0.02 0.89 16 15 C -0.12 -0.69 6.42 -24.87 -0.16 -0.85 16 16 C -0.12 -0.77 3.07 -88.46 -0.27 -1.04 16 17 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 18 C 0.15 0.91 5.10 -4.04 -0.02 0.89 16 19 N -0.69 -5.20 5.60 -62.29 -0.35 -5.55 16 20 C 0.56 5.04 8.43 -322.71 -2.72 2.32 16 21 N -0.54 -4.60 9.58 -13.86 -0.13 -4.73 16 22 C 0.18 1.16 11.29 -17.15 -0.19 0.96 16 23 C -0.08 -0.54 7.38 -39.18 -0.29 -0.83 16 24 F -0.13 -0.90 17.30 2.25 0.04 -0.86 16 25 C 0.18 1.24 11.29 -17.15 -0.19 1.04 16 26 N -0.55 -4.96 10.46 -13.86 -0.14 -5.10 16 27 C 0.11 1.16 6.23 -2.51 -0.02 1.14 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.10 1.74 8.14 -51.91 -0.42 1.32 16 30 H 0.10 1.76 8.14 -51.91 -0.42 1.34 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.42 8.04 -51.93 -0.42 0.00 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.50 8.03 -51.93 -0.42 0.08 16 37 H 0.42 2.98 8.55 -40.82 -0.35 2.63 16 38 H 0.18 0.63 8.06 -52.48 -0.42 0.21 16 39 H 0.18 0.73 8.06 -52.49 -0.42 0.30 16 40 H 0.07 0.71 7.96 -51.93 -0.41 0.29 16 41 H 0.08 0.89 8.04 -51.93 -0.42 0.47 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -35.69 368.11 -10.41 -46.10 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: -5.40 Total: -1.52 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: -3.56 Total: 0.30 kcal Atomic # 7 Polarization: -49.32 SS G_CDS: -0.42 Total: -49.74 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 9 Polarization: -0.90 SS G_CDS: 0.04 Total: -0.86 kcal Atomic # 14 Polarization: 21.77 SS G_CDS: -4.72 Total: 17.05 kcal Atomic # 16 Polarization: -3.63 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.69 -10.41 -46.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098507486.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.175 kcal (2) G-P(sol) polarization free energy of solvation -35.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds