Wall clock time and date at job start Sat Apr 11 2020 05:55:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86800 * 120.00036 * 2 1 4 4 H 1.48511 * 109.47049 * 89.99772 * 3 2 1 5 5 H 1.48494 * 109.47357 * 209.99845 * 3 2 1 6 6 H 1.48502 * 109.47120 * 330.00564 * 3 2 1 7 7 C 1.38798 * 120.00311 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00434 * 180.02562 * 7 2 1 9 9 S 1.76199 * 119.99771 * 0.02562 * 7 2 1 10 10 C 1.80998 * 100.00013 * 180.02562 * 9 7 2 11 11 C 1.50708 * 109.47052 * 180.02562 * 10 9 7 12 12 O 1.21284 * 119.99748 * 359.97438 * 11 10 9 13 13 N 1.34775 * 119.99957 * 180.02562 * 11 10 9 14 14 C 1.47029 * 125.64627 * 359.68523 * 13 11 10 15 15 C 1.54333 * 107.25978 * 178.85263 * 14 13 11 16 16 C 1.55155 * 103.02548 * 338.14186 * 15 14 13 17 17 H 1.09007 * 111.03519 * 277.21993 * 16 15 14 18 18 C 1.52996 * 111.00371 * 153.38293 * 16 15 14 19 19 N 1.46498 * 109.46875 * 181.34985 * 18 16 15 20 20 C 1.38575 * 119.99905 * 180.02562 * 19 18 16 21 21 C 1.39456 * 120.51463 * 359.97438 * 20 19 18 22 22 C 1.38473 * 118.31177 * 179.97438 * 21 20 19 23 23 F 1.35099 * 120.43123 * 179.97438 * 22 21 20 24 24 N 1.32785 * 119.13808 * 0.02562 * 22 21 20 25 25 C 1.31762 * 120.96411 * 0.02562 * 24 22 21 26 26 N 1.31763 * 121.85806 * 359.73147 * 25 24 22 27 27 C 1.47423 * 125.64955 * 179.97438 * 13 11 10 28 28 H 0.97001 * 119.99662 * 179.97438 * 1 2 3 29 29 H 1.09005 * 109.47183 * 299.99528 * 10 9 7 30 30 H 1.08991 * 109.47038 * 60.00359 * 10 9 7 31 31 H 1.09000 * 109.88009 * 298.39801 * 14 13 11 32 32 H 1.08995 * 109.88176 * 59.56020 * 14 13 11 33 33 H 1.09007 * 110.84699 * 219.66781 * 15 14 13 34 34 H 1.09001 * 110.51506 * 96.45626 * 15 14 13 35 35 H 1.09001 * 109.47313 * 301.34662 * 18 16 15 36 36 H 1.09006 * 109.47148 * 61.35177 * 18 16 15 37 37 H 0.97003 * 120.00189 * 359.97438 * 19 18 16 38 38 H 1.07998 * 120.84718 * 359.95926 * 21 20 19 39 39 H 1.07999 * 119.06825 * 180.02562 * 25 24 22 40 40 H 1.09005 * 110.36322 * 322.92640 * 27 13 11 41 41 H 1.09000 * 110.36548 * 85.24661 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0465 1.4002 5 1 3.5479 1.4402 -0.7000 6 1 1.4477 2.6527 -0.6999 7 6 2.0104 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0001 9 16 1.1294 -2.7279 -0.0019 10 6 2.5160 -3.8913 -0.0013 11 6 1.9875 -5.3027 -0.0030 12 8 0.7911 -5.5022 -0.0040 13 7 2.8442 -6.3431 -0.0024 14 6 4.3112 -6.2450 -0.0067 15 6 4.8665 -7.6846 0.0254 16 6 3.6841 -8.5026 0.6087 17 1 3.6681 -8.4455 1.6971 18 6 3.7398 -9.9578 0.1395 19 7 2.5930 -10.6900 0.6825 20 6 2.4293 -12.0351 0.3922 21 6 3.3494 -12.7021 -0.4160 22 6 3.1418 -14.0463 -0.6762 23 9 4.0059 -14.7341 -1.4542 24 7 2.0817 -14.6501 -0.1520 25 6 1.2313 -13.9890 0.6070 26 7 1.3938 -12.7110 0.8833 27 6 2.4657 -7.7679 -0.0033 28 1 -0.4850 -0.8401 -0.0004 29 1 3.1252 -3.7309 -0.8909 30 1 3.1238 -3.7317 0.8891 31 1 4.6460 -5.7364 -0.9108 32 1 4.6489 -5.6996 0.8745 33 1 5.7386 -7.7496 0.6760 34 1 5.1096 -8.0228 -0.9819 35 1 3.7087 -9.9899 -0.9495 36 1 4.6637 -10.4176 0.4905 37 1 1.9486 -10.2335 1.2459 38 1 4.2021 -12.1836 -0.8288 39 1 0.3796 -14.5106 1.0179 40 1 1.5796 -7.9253 0.6117 41 1 2.2876 -8.1124 -1.0220 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098508236.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:35 Heat of formation + Delta-G solvation = -26.688364 kcal Electronic energy + Delta-G solvation = -25458.569961 eV Core-core repulsion = 21414.369536 eV Total energy + Delta-G solvation = -4044.200425 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.59452 -41.34373 -40.14700 -38.11036 -36.59985 -33.67886 -32.58011 -32.55021 -31.15051 -29.86835 -29.04486 -26.36237 -24.95833 -24.68561 -23.85686 -22.89577 -21.11499 -19.63282 -19.02443 -18.74199 -18.27096 -17.04620 -16.81416 -16.71078 -16.29820 -16.06475 -15.72766 -15.54953 -15.17640 -14.83820 -14.61980 -14.28401 -14.18273 -14.03697 -13.87697 -13.61414 -13.25304 -12.92485 -12.62865 -12.41992 -12.03606 -11.92231 -11.81512 -11.78588 -11.43013 -11.24803 -11.19995 -10.94578 -10.29934 -10.22666 -9.94010 -9.65090 -9.61557 -9.05629 -8.86090 -8.72149 -8.27606 -6.72947 -6.66583 -4.05207 0.38016 0.72209 2.27198 2.67626 2.85272 2.92865 3.26137 3.27898 3.35181 3.38247 3.52683 3.71353 3.88647 3.97803 4.12066 4.19693 4.21835 4.51974 4.59621 4.68977 4.72594 4.79927 4.87449 5.00078 5.05892 5.07358 5.18060 5.28314 5.31222 5.42396 5.50420 5.53764 5.65937 5.72413 5.74227 5.93814 6.04202 6.19781 6.52179 6.87105 7.44399 7.62078 7.87509 8.34268 8.45629 9.22476 10.77323 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.032246 B = 0.001722 C = 0.001661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.107306 B =16260.103734 C =16851.887451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.035 3.965 3 Si 1.087 2.913 4 H -0.284 1.284 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.608 4.608 8 H 0.066 0.934 9 S -0.117 6.117 10 C -0.124 4.124 11 C 0.547 3.453 12 O -0.514 6.514 13 N -0.626 5.626 14 C 0.101 3.899 15 C -0.120 4.120 16 C -0.116 4.116 17 H 0.097 0.903 18 C 0.133 3.867 19 N -0.702 5.702 20 C 0.464 3.536 21 C -0.320 4.320 22 C 0.385 3.615 23 F -0.102 7.102 24 N -0.594 5.594 25 C 0.378 3.622 26 N -0.582 5.582 27 C 0.112 3.888 28 H 0.278 0.722 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.415 0.585 38 H 0.154 0.846 39 H 0.208 0.792 40 H 0.079 0.921 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.955 -26.121 0.808 29.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.175 4.175 3 Si 0.913 3.087 4 H -0.210 1.210 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.756 4.756 8 H 0.084 0.916 9 S 0.110 5.890 10 C -0.275 4.275 11 C 0.336 3.664 12 O -0.388 6.388 13 N -0.364 5.364 14 C -0.023 4.023 15 C -0.158 4.158 16 C -0.136 4.136 17 H 0.115 0.885 18 C 0.008 3.992 19 N -0.333 5.333 20 C 0.220 3.780 21 C -0.350 4.350 22 C 0.226 3.774 23 F -0.081 7.081 24 N -0.320 5.320 25 C 0.089 3.911 26 N -0.307 5.307 27 C -0.011 4.011 28 H 0.090 0.910 29 H 0.110 0.890 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.107 0.893 34 H 0.101 0.899 35 H 0.094 0.906 36 H 0.096 0.904 37 H 0.253 0.747 38 H 0.171 0.829 39 H 0.225 0.775 40 H 0.097 0.903 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 10.387 -25.039 1.037 27.128 hybrid contribution 2.486 -0.923 -0.309 2.669 sum 12.872 -25.961 0.728 28.987 Atomic orbital electron populations 1.70773 1.06709 1.31006 1.43259 1.26069 0.96329 1.02160 0.92977 0.83286 0.74417 0.73918 0.77056 1.21027 1.21290 1.20464 1.23713 0.96021 0.92079 1.63755 0.91557 1.84847 1.08064 0.98897 1.97227 1.23290 1.05062 0.94040 1.05130 1.20034 0.85708 0.85501 0.75192 1.90722 1.14915 1.85101 1.48060 1.48453 1.06572 1.05517 1.75878 1.22023 0.80380 0.97293 1.02583 1.22627 0.97235 0.93632 1.02318 1.22617 0.96503 0.92627 1.01852 0.88461 1.21538 0.88243 0.90339 0.99050 1.44608 1.28979 1.05556 1.54202 1.18253 0.87516 0.85926 0.86347 1.21772 1.06778 0.95145 1.11260 1.18008 0.85857 0.86514 0.86979 1.91665 1.65801 1.80073 1.70578 1.67868 1.05788 1.41648 1.16708 1.24575 0.94316 0.85425 0.86778 1.68041 1.22882 1.10679 1.29139 1.22188 0.97174 0.80799 1.00944 0.90951 0.89011 0.88997 0.90886 0.90981 0.89289 0.89933 0.90594 0.90422 0.74713 0.82861 0.77531 0.90289 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.31 13.67 55.49 0.76 -26.55 16 2 C 0.04 1.02 5.49 -17.43 -0.10 0.92 16 3 Si 1.09 24.68 29.92 -169.99 -5.09 19.59 16 4 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.61 -17.32 9.50 30.94 0.29 -17.02 16 8 H 0.07 1.80 7.80 -52.49 -0.41 1.40 16 9 S -0.12 -3.12 19.60 -107.50 -2.11 -5.22 16 10 C -0.12 -2.48 5.35 36.01 0.19 -2.28 16 11 C 0.55 10.07 7.87 -10.98 -0.09 9.98 16 12 O -0.51 -11.54 16.12 5.55 0.09 -11.45 16 13 N -0.63 -8.02 3.33 -170.52 -0.57 -8.59 16 14 C 0.10 0.87 6.49 -3.06 -0.02 0.85 16 15 C -0.12 -0.58 6.42 -24.89 -0.16 -0.74 16 16 C -0.12 -0.64 3.11 -88.49 -0.27 -0.91 16 17 H 0.10 0.54 8.14 -51.93 -0.42 0.11 16 18 C 0.13 0.55 4.38 -4.04 -0.02 0.54 16 19 N -0.70 -4.30 5.56 -60.29 -0.34 -4.64 16 20 C 0.46 3.66 7.71 -154.76 -1.19 2.47 16 21 C -0.32 -2.32 9.38 -39.04 -0.37 -2.68 16 22 C 0.38 3.43 8.50 -17.05 -0.14 3.28 16 23 F -0.10 -0.92 17.30 2.25 0.04 -0.88 16 24 N -0.59 -5.61 10.45 -14.98 -0.16 -5.77 16 25 C 0.38 2.95 12.28 -92.21 -1.13 1.81 16 26 N -0.58 -5.13 10.47 -13.84 -0.14 -5.28 16 27 C 0.11 1.09 6.08 -2.54 -0.02 1.08 16 28 H 0.28 8.79 7.12 -40.82 -0.29 8.50 16 29 H 0.09 1.70 8.14 -51.91 -0.42 1.28 16 30 H 0.09 1.70 8.14 -51.92 -0.42 1.28 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.32 8.04 -51.93 -0.42 -0.10 16 35 H 0.08 0.29 7.93 -51.93 -0.41 -0.12 16 36 H 0.08 0.22 7.97 -51.93 -0.41 -0.19 16 37 H 0.42 2.63 8.46 -40.82 -0.35 2.29 16 38 H 0.15 0.75 6.86 -52.49 -0.36 0.39 16 39 H 0.21 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 41 H 0.07 0.66 8.00 -51.93 -0.42 0.24 16 LS Contribution 367.42 15.07 5.54 5.54 Total: -1.00 -36.86 367.42 -10.23 -47.09 By element: Atomic # 1 Polarization: 4.12 SS G_CDS: -5.24 Total: -1.12 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -3.02 Total: -2.72 kcal Atomic # 7 Polarization: -50.38 SS G_CDS: -0.45 Total: -50.83 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.04 Total: -0.88 kcal Atomic # 14 Polarization: 24.68 SS G_CDS: -5.09 Total: 19.59 kcal Atomic # 16 Polarization: -3.12 SS G_CDS: -2.11 Total: -5.22 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.86 -10.23 -47.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508236.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.401 kcal (2) G-P(sol) polarization free energy of solvation -36.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds