Wall clock time and date at job start Sat Apr 11 2020 05:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86803 * 120.00037 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00086 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00037 * 3 2 1 6 6 H 1.48490 * 109.46901 * 330.00013 * 3 2 1 7 7 C 1.38805 * 120.00034 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99860 * 359.97438 * 7 2 1 9 9 S 1.76189 * 120.00013 * 179.97438 * 7 2 1 10 10 C 1.81005 * 100.00097 * 180.02562 * 9 7 2 11 11 C 1.50701 * 109.47173 * 179.97438 * 10 9 7 12 12 O 1.21281 * 120.00120 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.47024 * 125.64967 * 359.69284 * 13 11 10 15 15 C 1.54315 * 107.27551 * 180.96975 * 14 13 11 16 16 C 1.55153 * 102.86332 * 22.52770 * 15 14 13 17 17 H 1.08996 * 111.04147 * 82.39314 * 16 15 14 18 18 C 1.53009 * 111.00263 * 206.23013 * 16 15 14 19 19 N 1.46503 * 109.46832 * 178.64886 * 18 16 15 20 20 C 1.39159 * 119.99606 * 180.02562 * 19 18 16 21 21 C 1.39207 * 120.06150 * 359.72844 * 20 19 18 22 22 N 1.32008 * 119.93021 * 179.73147 * 21 20 19 23 23 C 1.32409 * 120.05302 * 0.54414 * 22 21 20 24 24 F 1.35100 * 119.93634 * 179.68758 * 23 22 21 25 25 C 1.38467 * 120.12187 * 359.70832 * 23 22 21 26 26 N 1.32206 * 120.07015 * 0.02562 * 25 23 22 27 27 C 1.47429 * 125.64680 * 180.02562 * 13 11 10 28 28 H 0.97001 * 119.99662 * 359.97438 * 1 2 3 29 29 H 1.09005 * 109.47161 * 300.00107 * 10 9 7 30 30 H 1.09002 * 109.46892 * 59.99887 * 10 9 7 31 31 H 1.08992 * 109.88348 * 300.51201 * 14 13 11 32 32 H 1.09004 * 109.87945 * 61.68072 * 14 13 11 33 33 H 1.09009 * 110.92279 * 264.11191 * 15 14 13 34 34 H 1.08997 * 110.59033 * 140.78960 * 15 14 13 35 35 H 1.08996 * 109.47241 * 298.64894 * 18 16 15 36 36 H 1.09006 * 109.46963 * 58.65107 * 18 16 15 37 37 H 0.96994 * 119.99990 * 0.02562 * 19 18 16 38 38 H 1.08005 * 120.03528 * 359.97438 * 21 20 19 39 39 H 1.08001 * 119.96021 * 180.02562 * 25 23 22 40 40 H 1.08994 * 110.36783 * 274.67461 * 27 13 11 41 41 H 1.09004 * 110.36392 * 36.89014 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6178 0.0000 4 1 2.4979 2.0464 1.4001 5 1 3.5479 1.4402 -0.7000 6 1 1.4478 2.6526 -0.7000 7 6 2.0104 -1.2021 0.0005 8 1 1.4703 -2.1374 0.0014 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5731 -3.2326 -0.0010 12 8 6.3441 -2.2964 -0.0015 13 7 6.0457 -4.4947 -0.0005 14 6 5.2273 -5.7161 0.0075 15 6 6.1963 -6.9169 0.0299 16 6 7.4958 -6.3013 0.6126 17 1 7.4544 -6.2577 1.7009 18 6 8.7284 -7.0776 0.1443 19 7 9.9359 -6.4499 0.6867 20 6 11.1879 -6.9826 0.3949 21 6 11.2941 -8.1151 -0.4076 22 7 12.4834 -8.6152 -0.6871 23 6 13.5738 -8.0468 -0.1960 24 9 14.7894 -8.5642 -0.4785 25 6 13.4705 -6.9233 0.6067 26 7 12.2821 -6.4153 0.8855 27 6 7.4689 -4.8793 -0.0010 28 1 -0.4850 0.8401 0.0004 29 1 3.6440 -3.4315 0.8904 30 1 3.6433 -3.4318 -0.8896 31 1 4.5939 -5.7321 0.8944 32 1 4.6116 -5.7558 -0.8911 33 1 6.3677 -7.2976 -0.9771 34 1 5.8165 -7.7039 0.6814 35 1 8.6646 -8.1072 0.4963 36 1 8.7717 -7.0679 -0.9448 37 1 9.8627 -5.6631 1.2492 38 1 10.4046 -8.5819 -0.8043 39 1 14.3616 -6.4615 1.0055 40 1 7.8564 -4.8985 -1.0195 41 1 8.0486 -4.1889 0.6118 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098508396.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:38 Heat of formation + Delta-G solvation = -17.999275 kcal Electronic energy + Delta-G solvation = -25392.316710 eV Core-core repulsion = 21348.493072 eV Total energy + Delta-G solvation = -4043.823638 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.32693 -41.50701 -40.14059 -38.05290 -36.40311 -34.73097 -32.67454 -32.47282 -30.42091 -29.83457 -28.70840 -26.35010 -25.65987 -25.24894 -23.85274 -22.89764 -21.10145 -19.60264 -18.92692 -18.41848 -18.00609 -17.64980 -16.89548 -16.76301 -16.66022 -15.68050 -15.59356 -15.30656 -15.10742 -14.88844 -14.55938 -14.36873 -14.14084 -13.99384 -13.92392 -13.54546 -13.12442 -12.93500 -12.79200 -12.54606 -12.17450 -12.03512 -11.90729 -11.79013 -11.54386 -11.29946 -11.23766 -11.04040 -10.71468 -10.63944 -9.89801 -9.77974 -9.62866 -9.04110 -8.71643 -8.54841 -8.39005 -6.97019 -6.32703 -4.05040 0.26458 0.58713 2.28257 2.59779 2.84456 3.02764 3.09613 3.12107 3.30223 3.47491 3.54370 3.70503 3.83773 3.96092 4.01095 4.19346 4.29504 4.31020 4.58261 4.61268 4.67365 4.77479 4.82266 4.86680 5.00157 5.06386 5.07879 5.12783 5.31548 5.43612 5.51386 5.54510 5.69124 5.74538 5.75665 5.94630 6.03444 6.20081 6.74079 6.76189 7.25388 7.44517 7.90225 8.33017 8.37405 9.13392 10.76402 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029344 B = 0.001752 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.958753 B =15977.428930 C =16742.371713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.235 1.235 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.118 4.118 11 C 0.547 3.453 12 O -0.516 6.516 13 N -0.626 5.626 14 C 0.100 3.900 15 C -0.120 4.120 16 C -0.116 4.116 17 H 0.097 0.903 18 C 0.133 3.867 19 N -0.709 5.709 20 C 0.351 3.649 21 C 0.028 3.972 22 N -0.430 5.430 23 C 0.181 3.819 24 F -0.110 7.110 25 C 0.101 3.899 26 N -0.479 5.479 27 C 0.112 3.888 28 H 0.271 0.729 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.413 0.587 38 H 0.175 0.825 39 H 0.182 0.818 40 H 0.068 0.932 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.161 -21.023 1.067 29.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.159 1.159 6 H -0.199 1.199 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.268 4.268 11 C 0.336 3.664 12 O -0.390 6.390 13 N -0.364 5.364 14 C -0.024 4.024 15 C -0.158 4.158 16 C -0.136 4.136 17 H 0.115 0.885 18 C 0.009 3.991 19 N -0.341 5.341 20 C 0.112 3.888 21 C -0.141 4.141 22 N -0.148 5.148 23 C 0.024 3.976 24 F -0.089 7.089 25 C -0.062 4.062 26 N -0.201 5.201 27 C -0.011 4.011 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.094 0.906 37 H 0.250 0.750 38 H 0.192 0.808 39 H 0.198 0.802 40 H 0.086 0.914 41 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 21.973 -19.534 0.964 29.416 hybrid contribution -0.662 -0.188 0.161 0.707 sum 21.311 -19.721 1.125 29.058 Atomic orbital electron populations 1.69937 1.05897 1.27800 1.47941 1.24709 0.94453 0.98957 0.93133 0.86739 0.81898 0.83286 0.79964 1.19181 1.15940 1.19889 1.22296 0.88155 0.97549 1.58950 0.89372 1.84812 1.09426 0.99929 1.97428 1.23257 0.93532 1.04337 1.05700 1.20019 0.90637 0.80585 0.75194 1.90717 1.58880 1.41190 1.48251 1.48443 1.06764 1.05402 1.75750 1.22038 0.94180 0.83431 1.02719 1.22631 0.93510 0.97321 1.02369 1.22612 0.93985 0.95122 1.01839 0.88487 1.21533 0.81815 0.96819 0.98969 1.44564 1.01123 1.33276 1.55165 1.19384 0.87175 0.90769 0.91515 1.22905 0.95099 0.95514 1.00627 1.67568 0.98162 1.29945 1.19173 1.18783 0.81691 0.95409 1.01674 1.91626 1.38199 1.86659 1.92420 1.23309 0.96388 0.92145 0.94405 1.68039 0.97239 1.30965 1.23821 1.22188 0.83619 0.94314 1.00958 0.91906 0.88547 0.88502 0.90863 0.90790 0.89836 0.89302 0.90469 0.90650 0.75006 0.80780 0.80152 0.91351 0.90353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.21 13.97 55.49 0.78 -25.43 16 2 C 0.10 2.78 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.57 27.74 -169.99 -4.72 16.86 16 4 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.24 -5.93 6.74 56.52 0.38 -5.55 16 6 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.52 -14.83 10.04 30.94 0.31 -14.52 16 8 H 0.09 2.60 8.03 -52.49 -0.42 2.18 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.23 5.35 36.01 0.19 -2.04 16 11 C 0.55 9.56 7.87 -10.99 -0.09 9.47 16 12 O -0.52 -11.03 16.12 5.56 0.09 -10.94 16 13 N -0.63 -7.59 3.33 -170.53 -0.57 -8.16 16 14 C 0.10 0.81 6.48 -3.07 -0.02 0.79 16 15 C -0.12 -0.53 6.42 -24.90 -0.16 -0.69 16 16 C -0.12 -0.57 3.10 -88.48 -0.27 -0.85 16 17 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 18 C 0.13 0.46 4.35 -4.04 -0.02 0.44 16 19 N -0.71 -3.92 5.59 -60.29 -0.34 -4.26 16 20 C 0.35 2.59 7.67 -154.62 -1.19 1.40 16 21 C 0.03 0.20 10.49 -17.12 -0.18 0.02 16 22 N -0.43 -4.01 10.50 -13.24 -0.14 -4.15 16 23 C 0.18 1.59 8.43 -17.22 -0.15 1.45 16 24 F -0.11 -0.99 17.29 2.25 0.04 -0.95 16 25 C 0.10 0.74 11.20 -17.31 -0.19 0.54 16 26 N -0.48 -4.08 10.53 -12.17 -0.13 -4.21 16 27 C 0.11 1.02 6.08 -2.54 -0.02 1.01 16 28 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 29 H 0.10 1.70 8.14 -51.91 -0.42 1.28 16 30 H 0.10 1.71 8.14 -51.92 -0.42 1.29 16 31 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.28 8.04 -51.92 -0.42 -0.14 16 34 H 0.09 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.08 0.15 7.93 -51.93 -0.41 -0.26 16 36 H 0.08 0.22 7.91 -51.93 -0.41 -0.19 16 37 H 0.41 2.43 8.46 -40.82 -0.35 2.09 16 38 H 0.18 0.71 6.72 -52.48 -0.35 0.36 16 39 H 0.18 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.07 0.62 8.00 -51.93 -0.42 0.20 16 41 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 LS Contribution 365.89 15.07 5.51 5.51 Total: -1.00 -36.00 365.89 -8.64 -44.64 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -5.31 Total: -3.08 kcal Atomic # 6 Polarization: 1.60 SS G_CDS: -1.87 Total: -0.27 kcal Atomic # 7 Polarization: -45.82 SS G_CDS: -0.40 Total: -46.21 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.09 Total: -10.94 kcal Atomic # 9 Polarization: -0.99 SS G_CDS: 0.04 Total: -0.95 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.72 Total: 16.86 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.00 -8.64 -44.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508396.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.646 kcal (2) G-P(sol) polarization free energy of solvation -36.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds