Wall clock time and date at job start Sat Apr 11 2020 05:55:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86793 * 120.00067 * 2 1 4 4 H 1.48503 * 109.47212 * 239.99643 * 3 2 1 5 5 H 1.48502 * 109.47060 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47482 * 119.99768 * 3 2 1 7 7 C 1.38804 * 120.00003 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99724 * 179.97438 * 7 2 1 9 9 S 1.76202 * 119.99839 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99581 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46889 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99970 * 359.97438 * 11 10 9 13 13 N 1.34775 * 120.00289 * 180.02562 * 11 10 9 14 14 C 1.47031 * 125.64581 * 0.02563 * 13 11 10 15 15 C 1.54327 * 107.26879 * 178.89516 * 14 13 11 16 16 C 1.55156 * 102.94352 * 337.80788 * 15 14 13 17 17 H 1.08996 * 111.00130 * 277.42537 * 16 15 14 18 18 C 1.53000 * 111.00271 * 153.58002 * 16 15 14 19 19 N 1.46502 * 109.47267 * 175.00100 * 18 16 15 20 20 C 1.39150 * 120.00072 * 179.97438 * 19 18 16 21 21 C 1.39210 * 120.06420 * 359.71849 * 20 19 18 22 22 N 1.32007 * 119.93300 * 179.73319 * 21 20 19 23 23 C 1.32402 * 120.05144 * 0.54435 * 22 21 20 24 24 F 1.35101 * 119.93385 * 179.68877 * 23 22 21 25 25 C 1.38461 * 120.12548 * 359.71104 * 23 22 21 26 26 N 1.32213 * 120.06922 * 0.02562 * 25 23 22 27 27 C 1.47425 * 125.65314 * 179.97438 * 13 11 10 28 28 H 0.97002 * 120.00343 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47289 * 60.00594 * 10 9 7 30 30 H 1.08988 * 109.47365 * 299.99630 * 10 9 7 31 31 H 1.08998 * 109.88059 * 59.47881 * 14 13 11 32 32 H 1.08994 * 109.87878 * 298.31161 * 14 13 11 33 33 H 1.09004 * 110.71640 * 96.17346 * 15 14 13 34 34 H 1.09000 * 110.71586 * 219.44007 * 15 14 13 35 35 H 1.09002 * 109.46619 * 294.99391 * 18 16 15 36 36 H 1.08998 * 109.47605 * 54.99384 * 18 16 15 37 37 H 0.97002 * 119.99298 * 359.97438 * 19 18 16 38 38 H 1.07999 * 120.02884 * 359.97438 * 21 20 19 39 39 H 1.08002 * 119.96622 * 179.97438 * 25 23 22 40 40 H 1.09000 * 110.36875 * 85.33513 * 27 13 11 41 41 H 1.09003 * 110.45479 * 323.05557 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0021 13 7 2.8441 -6.3431 0.0018 14 6 4.3111 -6.2451 0.0025 15 6 4.8665 -7.6847 0.0315 16 6 3.6842 -8.5015 0.6165 17 1 3.6689 -8.4419 1.7048 18 6 3.7397 -9.9576 0.1501 19 7 2.6821 -10.7238 0.8140 20 6 2.5335 -12.0812 0.5461 21 6 3.3853 -12.7111 -0.3570 22 7 3.2453 -14.0001 -0.6053 23 6 2.2891 -14.6910 -0.0043 24 9 2.1440 -16.0087 -0.2649 25 6 1.4372 -14.0656 0.8903 26 7 1.5763 -12.7760 1.1465 27 6 2.4656 -7.7679 0.0030 28 1 -0.4851 0.8400 -0.0004 29 1 3.1245 -3.7314 0.8906 30 1 3.1244 -3.7314 -0.8894 31 1 4.6458 -5.7008 0.8855 32 1 4.6490 -5.7355 -0.8998 33 1 5.1093 -8.0246 -0.9753 34 1 5.7387 -7.7485 0.6821 35 1 3.5952 -9.9990 -0.9295 36 1 4.7106 -10.3836 0.4032 37 1 2.0855 -10.2848 1.4403 38 1 4.1623 -12.1467 -0.8510 39 1 0.6578 -14.6316 1.3787 40 1 2.2876 -8.1141 -1.0151 41 1 1.5790 -7.9260 0.6172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098508397.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:42 Heat of formation + Delta-G solvation = -18.149190 kcal Electronic energy + Delta-G solvation = -25317.285858 eV Core-core repulsion = 21273.455719 eV Total energy + Delta-G solvation = -4043.830139 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.30551 -41.48136 -40.04960 -37.95936 -36.35696 -34.70387 -32.60376 -32.46012 -30.36708 -29.72956 -28.65175 -26.28609 -25.54787 -25.18171 -23.77972 -22.86721 -21.07084 -19.49632 -18.89252 -18.39472 -17.98964 -17.64016 -16.83537 -16.64487 -16.62948 -15.60633 -15.53950 -15.26672 -14.95074 -14.83349 -14.53220 -14.32162 -14.08197 -13.96921 -13.93741 -13.47697 -13.15464 -12.79771 -12.61484 -12.43059 -12.15142 -11.92713 -11.86908 -11.73932 -11.48940 -11.19268 -11.07834 -11.06654 -10.80504 -10.66415 -9.86428 -9.75691 -9.50377 -9.09253 -8.62652 -8.36296 -8.28478 -6.54692 -6.24821 -3.96202 0.28828 0.61100 2.31293 2.80958 2.97254 3.05218 3.12197 3.20758 3.22391 3.26495 3.54043 3.73086 3.86716 3.99554 4.05650 4.17180 4.23991 4.34079 4.61398 4.70304 4.78749 4.84417 4.88121 4.98351 5.07826 5.10229 5.12960 5.35106 5.43019 5.52590 5.59521 5.64633 5.73230 5.78105 5.86296 6.06490 6.07701 6.29789 6.76956 6.78609 7.27952 7.54471 7.56428 8.31427 8.46410 9.20168 10.82530 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.035685 B = 0.001656 C = 0.001601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.451078 B =16908.052536 C =17483.745023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.061 6.061 10 C -0.147 4.147 11 C 0.548 3.452 12 O -0.514 6.514 13 N -0.628 5.628 14 C 0.101 3.899 15 C -0.120 4.120 16 C -0.116 4.116 17 H 0.096 0.904 18 C 0.133 3.867 19 N -0.708 5.708 20 C 0.352 3.648 21 C 0.028 3.972 22 N -0.430 5.430 23 C 0.181 3.819 24 F -0.110 7.110 25 C 0.101 3.899 26 N -0.479 5.479 27 C 0.112 3.888 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.413 0.587 38 H 0.175 0.825 39 H 0.181 0.819 40 H 0.067 0.933 41 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.970 -25.811 1.306 28.481 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.388 6.388 13 N -0.366 5.366 14 C -0.022 4.022 15 C -0.159 4.159 16 C -0.135 4.135 17 H 0.115 0.885 18 C 0.009 3.991 19 N -0.341 5.341 20 C 0.112 3.888 21 C -0.142 4.142 22 N -0.149 5.149 23 C 0.024 3.976 24 F -0.089 7.089 25 C -0.062 4.062 26 N -0.201 5.201 27 C -0.011 4.011 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.250 0.750 38 H 0.192 0.808 39 H 0.198 0.802 40 H 0.086 0.914 41 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 10.089 -25.859 1.199 27.783 hybrid contribution 1.783 1.184 0.154 2.145 sum 11.871 -24.676 1.353 27.416 Atomic orbital electron populations 1.70006 1.05960 1.27621 1.46635 1.24994 0.95033 0.99032 0.94479 0.86218 0.79240 0.81208 0.78797 1.19929 1.20777 1.19929 1.22813 0.94850 0.91587 1.59244 0.90962 1.85419 1.04873 0.96367 1.96731 1.23508 1.06524 0.94896 1.04811 1.20062 0.85669 0.85495 0.75067 1.90721 1.14940 1.85107 1.48009 1.48490 1.06528 1.05521 1.76024 1.22000 0.80501 0.97190 1.02523 1.22629 0.97214 0.93732 1.02281 1.22608 0.96505 0.92603 1.01815 0.88523 1.21533 0.90304 0.89885 0.97427 1.44574 1.36547 1.04244 1.48701 1.19384 0.90962 0.87101 0.91380 1.22904 1.01838 0.89530 0.99887 1.67563 1.17825 1.07790 1.21674 1.18777 0.97574 0.81020 1.00229 1.91625 1.94590 1.29542 1.93167 1.23307 0.98064 0.90262 0.94608 1.68041 1.19886 1.06746 1.25402 1.22195 0.97134 0.80904 1.00863 0.92085 0.89278 0.89265 0.91049 0.90952 0.89914 0.89403 0.90634 0.90509 0.74997 0.80789 0.80159 0.91437 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.92 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.10 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -2.92 5.35 36.01 0.19 -2.72 16 11 C 0.55 10.13 7.87 -10.99 -0.09 10.05 16 12 O -0.51 -11.63 16.12 5.55 0.09 -11.54 16 13 N -0.63 -8.07 3.33 -170.51 -0.57 -8.64 16 14 C 0.10 0.88 6.49 -3.06 -0.02 0.86 16 15 C -0.12 -0.58 6.42 -24.90 -0.16 -0.74 16 16 C -0.12 -0.62 3.05 -88.47 -0.27 -0.89 16 17 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 18 C 0.13 0.51 4.36 -4.04 -0.02 0.49 16 19 N -0.71 -4.12 5.68 -60.30 -0.34 -4.46 16 20 C 0.35 2.67 7.67 -154.63 -1.19 1.49 16 21 C 0.03 0.20 10.49 -17.12 -0.18 0.02 16 22 N -0.43 -4.10 10.50 -13.25 -0.14 -4.24 16 23 C 0.18 1.62 8.43 -17.22 -0.15 1.48 16 24 F -0.11 -1.01 17.29 2.25 0.04 -0.97 16 25 C 0.10 0.76 11.20 -17.31 -0.19 0.56 16 26 N -0.48 -4.18 10.53 -12.17 -0.13 -4.31 16 27 C 0.11 1.09 6.32 -2.53 -0.02 1.08 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.30 8.04 -51.93 -0.42 -0.11 16 34 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 35 H 0.08 0.26 7.75 -51.93 -0.40 -0.15 16 36 H 0.08 0.18 7.95 -51.93 -0.41 -0.24 16 37 H 0.41 2.53 8.60 -40.82 -0.35 2.18 16 38 H 0.18 0.76 6.72 -52.49 -0.35 0.40 16 39 H 0.18 0.79 8.06 -52.49 -0.42 0.37 16 40 H 0.07 0.64 7.91 -51.93 -0.41 0.23 16 41 H 0.08 0.88 8.04 -51.93 -0.42 0.46 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -36.38 368.78 -9.14 -45.52 By element: Atomic # 1 Polarization: 2.41 SS G_CDS: -5.27 Total: -2.86 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.88 Total: -1.13 kcal Atomic # 7 Polarization: -46.38 SS G_CDS: -0.44 Total: -46.82 kcal Atomic # 8 Polarization: -11.63 SS G_CDS: 0.09 Total: -11.54 kcal Atomic # 9 Polarization: -1.01 SS G_CDS: 0.04 Total: -0.97 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.38 -9.14 -45.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508397.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.374 kcal (2) G-P(sol) polarization free energy of solvation -36.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds