Wall clock time and date at job start Sat Apr 11 2020 05:55:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 119.99723 * 2 1 4 4 H 1.48494 * 109.47086 * 240.00224 * 3 2 1 5 5 H 1.48504 * 109.47376 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.47229 * 120.00235 * 3 2 1 7 7 C 1.38799 * 120.00251 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99906 * 180.02562 * 7 2 1 9 9 S 1.76197 * 120.00001 * 359.97438 * 7 2 1 10 10 C 1.80999 * 99.99999 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47083 * 180.02562 * 10 9 7 12 12 O 1.21290 * 120.00168 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00367 * 179.97438 * 11 10 9 14 14 C 1.47027 * 125.64274 * 359.95528 * 13 11 10 15 15 C 1.54323 * 107.26903 * 181.09414 * 14 13 11 16 16 C 1.55161 * 102.94198 * 22.19500 * 15 14 13 17 17 H 1.08997 * 111.03808 * 82.58498 * 16 15 14 18 18 C 1.53001 * 111.00436 * 206.42245 * 16 15 14 19 19 N 1.46495 * 109.47399 * 178.64593 * 18 16 15 20 20 C 1.39119 * 120.00369 * 179.97438 * 19 18 16 21 21 N 1.32563 * 120.10542 * 0.02562 * 20 19 18 22 22 C 1.32309 * 119.93978 * 179.68929 * 21 20 19 23 23 C 1.38065 * 120.16669 * 0.56922 * 22 21 20 24 24 N 1.32354 * 120.21994 * 359.42724 * 23 22 21 25 25 C 1.32069 * 120.05430 * 0.28117 * 24 23 22 26 26 F 1.35094 * 120.08523 * 179.97438 * 25 24 23 27 27 C 1.47425 * 125.65239 * 179.97438 * 13 11 10 28 28 H 0.97002 * 120.00034 * 359.97438 * 1 2 3 29 29 H 1.08996 * 109.47409 * 59.99693 * 10 9 7 30 30 H 1.09007 * 109.46758 * 299.99861 * 10 9 7 31 31 H 1.08996 * 109.88165 * 300.51013 * 14 13 11 32 32 H 1.08995 * 109.88264 * 61.68176 * 14 13 11 33 33 H 1.08992 * 110.72489 * 263.82973 * 15 14 13 34 34 H 1.09000 * 110.72352 * 140.55529 * 15 14 13 35 35 H 1.09004 * 109.47073 * 58.64669 * 18 16 15 36 36 H 1.09006 * 109.47279 * 298.65075 * 18 16 15 37 37 H 0.97001 * 119.99804 * 0.02562 * 19 18 16 38 38 H 1.08000 * 119.91814 * 180.29210 * 22 21 20 39 39 H 1.08002 * 119.89335 * 179.71344 * 23 22 21 40 40 H 1.09000 * 110.36511 * 37.00228 * 27 13 11 41 41 H 1.08990 * 110.46019 * 274.72110 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.1039 1.6965 -1.2125 5 1 1.2852 2.7466 0.0006 6 1 3.1041 1.6965 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1294 -2.7280 -0.0005 10 6 2.5160 -3.8913 -0.0005 11 6 1.9876 -5.3026 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8443 -6.3430 -0.0018 14 6 4.3113 -6.2449 -0.0029 15 6 4.8667 -7.6844 -0.0314 16 6 3.6843 -8.5016 -0.6160 17 1 3.6683 -8.4429 -1.7043 18 6 3.7399 -9.9575 -0.1489 19 7 2.5932 -10.6890 -0.6929 20 6 2.4288 -12.0398 -0.4034 21 7 3.3084 -12.6670 0.3649 22 6 3.1456 -13.9502 0.6432 23 6 2.0680 -14.6410 0.1258 24 7 1.1858 -14.0213 -0.6420 25 6 1.3367 -12.7392 -0.9207 26 9 0.4369 -12.1061 -1.7047 27 6 2.4658 -7.7678 -0.0019 28 1 -0.4850 0.8401 0.0004 29 1 3.1246 -3.7312 0.8894 30 1 3.1246 -3.7312 -0.8906 31 1 4.6458 -5.7009 -0.8862 32 1 4.6494 -5.7350 0.8992 33 1 5.1098 -8.0241 0.9753 34 1 5.7388 -7.7485 -0.6822 35 1 3.7089 -9.9911 0.9401 36 1 4.6639 -10.4168 -0.5004 37 1 1.9488 -10.2317 -1.2555 38 1 3.8599 -14.4596 1.2730 39 1 1.9419 -15.6895 0.3520 40 1 1.5794 -7.9248 -0.6166 41 1 2.2872 -8.1147 1.0158 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098508762.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:44 Heat of formation + Delta-G solvation = -45.699564 kcal Electronic energy + Delta-G solvation = -25674.045774 eV Core-core repulsion = 21629.020962 eV Total energy + Delta-G solvation = -4045.024812 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -50.08296 -41.92050 -41.11638 -39.00256 -37.21200 -34.88941 -34.60318 -33.52017 -31.34063 -30.86803 -29.59857 -27.73953 -26.94823 -25.33821 -24.66460 -23.51498 -21.63695 -20.76288 -19.72896 -19.42647 -19.03355 -18.50657 -18.01836 -17.65731 -17.42900 -16.89693 -16.66308 -16.26049 -15.99466 -15.71823 -15.61586 -15.25127 -15.00585 -14.81610 -14.54483 -14.36488 -14.27794 -13.90432 -13.75110 -13.50691 -13.18943 -13.13665 -12.87449 -12.71762 -12.64815 -12.45185 -12.28550 -12.05652 -11.75561 -11.68923 -11.17341 -11.14228 -11.01048 -10.31184 -10.29398 -9.73968 -8.89025 -8.70710 -8.35928 -6.15392 -0.24547 0.09926 1.22040 1.43355 1.43745 1.51859 1.54122 1.81254 2.05993 2.26031 2.45812 2.61562 2.98076 3.15731 3.24510 3.26465 3.45413 3.51554 3.73937 3.89080 4.07109 4.18421 4.21619 4.27222 4.32017 4.38978 4.42160 4.54853 4.55929 4.70825 4.78051 4.80631 4.95546 5.03848 5.21793 5.26476 5.36562 5.39680 5.83522 5.88768 6.17911 6.34442 6.36912 6.77080 7.04743 7.07103 8.73132 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028687 B = 0.001848 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.825576 B =15148.638237 C =15885.419271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.547 4.547 8 H 0.084 0.916 9 S -0.154 6.154 10 C -0.119 4.119 11 C 0.544 3.456 12 O -0.569 6.569 13 N -0.618 5.618 14 C 0.087 3.913 15 C -0.105 4.105 16 C -0.102 4.102 17 H 0.100 0.900 18 C 0.152 3.848 19 N -0.711 5.711 20 C 0.347 3.653 21 N -0.490 5.490 22 C 0.111 3.889 23 C 0.011 3.989 24 N -0.461 5.461 25 C 0.159 3.841 26 F -0.123 7.123 27 C 0.105 3.895 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.073 0.927 36 H 0.090 0.910 37 H 0.416 0.584 38 H 0.222 0.778 39 H 0.211 0.789 40 H 0.058 0.942 41 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.121 -29.466 0.977 34.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.185 1.185 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.073 5.927 10 C -0.270 4.270 11 C 0.332 3.668 12 O -0.448 6.448 13 N -0.352 5.352 14 C -0.035 4.035 15 C -0.143 4.143 16 C -0.121 4.121 17 H 0.118 0.882 18 C 0.029 3.971 19 N -0.344 5.344 20 C 0.105 3.895 21 N -0.214 5.214 22 C -0.050 4.050 23 C -0.149 4.149 24 N -0.180 5.180 25 C -0.005 4.005 26 F -0.102 7.102 27 C -0.018 4.018 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.135 0.865 35 H 0.092 0.908 36 H 0.109 0.891 37 H 0.253 0.747 38 H 0.239 0.761 39 H 0.228 0.772 40 H 0.076 0.924 41 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.302 -29.430 1.018 33.186 hybrid contribution 0.371 1.671 -0.495 1.782 sum 15.673 -27.759 0.524 31.882 Atomic orbital electron populations 1.70183 1.08038 1.28722 1.47850 1.26165 0.95986 1.03409 0.93655 0.84981 0.77789 0.75511 0.79571 1.18544 1.20412 1.18550 1.23157 0.95350 0.91795 1.59125 0.89787 1.85623 1.10634 0.99401 1.97054 1.23294 1.03355 0.93885 1.06428 1.19824 0.85466 0.86137 0.75390 1.90695 1.17214 1.85814 1.51112 1.48446 1.08140 1.05496 1.73167 1.22423 0.77564 1.00186 1.03284 1.22639 0.97238 0.90505 1.03920 1.22573 0.94596 0.93280 1.01665 0.88214 1.21322 0.88411 0.88459 0.98925 1.44736 1.29942 1.04839 1.54843 1.19096 0.89966 0.87770 0.92624 1.68211 1.26527 1.11813 1.14847 1.24325 0.97103 0.88332 0.95244 1.23911 0.91567 1.03231 0.96233 1.67595 1.30002 1.07223 1.13158 1.18596 0.91026 0.90098 1.00732 1.91580 1.66629 1.79987 1.72027 1.22397 0.98661 0.79646 1.01048 0.91966 0.87493 0.87449 0.90215 0.90195 0.88404 0.86529 0.90840 0.89144 0.74687 0.76128 0.77230 0.92379 0.91413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.44 13.22 21.65 0.29 -56.16 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.52 29.55 68.60 2.03 45.54 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 7 C -0.55 -31.38 9.50 67.95 0.65 -30.73 16 8 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 9 S -0.15 -8.73 20.57 -56.49 -1.16 -9.90 16 10 C -0.12 -4.84 5.35 71.23 0.38 -4.46 16 11 C 0.54 21.18 7.87 87.66 0.69 21.87 16 12 O -0.57 -27.82 16.12 -3.06 -0.05 -27.87 16 13 N -0.62 -16.53 3.33 -811.77 -2.70 -19.23 16 14 C 0.09 1.44 6.49 86.73 0.56 2.00 16 15 C -0.10 -0.89 6.42 31.78 0.20 -0.69 16 16 C -0.10 -1.19 3.11 -9.39 -0.03 -1.22 16 17 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 18 C 0.15 1.61 5.17 86.38 0.45 2.06 16 19 N -0.71 -10.49 5.56 -344.41 -1.92 -12.41 16 20 C 0.35 6.01 7.50 133.09 1.00 7.01 16 21 N -0.49 -6.88 9.73 -192.41 -1.87 -8.75 16 22 C 0.11 0.88 11.21 84.58 0.95 1.83 16 23 C 0.01 0.12 11.21 84.57 0.95 1.06 16 24 N -0.46 -8.90 10.50 -195.79 -2.06 -10.96 16 25 C 0.16 3.33 8.47 84.99 0.72 4.05 16 26 F -0.12 -2.89 16.68 44.97 0.75 -2.14 16 27 C 0.10 2.25 6.08 86.86 0.53 2.78 16 28 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 29 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 30 H 0.11 3.95 8.14 -2.39 -0.02 3.93 16 31 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.10 0.61 8.04 -2.39 -0.02 0.59 16 34 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.07 0.83 8.10 -2.38 -0.02 0.81 16 36 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 37 H 0.42 6.33 7.83 -92.71 -0.73 5.61 16 38 H 0.22 -0.34 8.06 -2.91 -0.02 -0.36 16 39 H 0.21 0.41 8.06 -2.91 -0.02 0.39 16 40 H 0.06 1.48 8.04 -2.39 -0.02 1.46 16 41 H 0.07 1.47 8.00 -2.39 -0.02 1.45 16 Total: -1.00 -85.67 369.66 1.16 -84.51 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: 0.34 Total: 10.60 kcal Atomic # 6 Polarization: -0.76 SS G_CDS: 7.51 Total: 6.75 kcal Atomic # 7 Polarization: -99.24 SS G_CDS: -8.26 Total: -107.50 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.05 Total: -27.87 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.75 Total: -2.14 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: -8.73 SS G_CDS: -1.16 Total: -9.90 kcal Total: -85.67 1.16 -84.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508762.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.812 kcal (2) G-P(sol) polarization free energy of solvation -85.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.512 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds