Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86795 * 120.00402 * 2 1 4 4 H 1.48500 * 109.47322 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47129 * 300.00401 * 3 2 1 6 6 H 1.48502 * 109.47379 * 60.00468 * 3 2 1 7 7 C 1.38812 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.07994 * 119.99709 * 180.02562 * 7 2 1 9 9 S 1.76195 * 119.99742 * 359.97438 * 7 2 1 10 10 C 1.80997 * 99.99838 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47350 * 180.02562 * 10 9 7 12 12 O 1.21291 * 119.99572 * 0.02562 * 11 10 9 13 13 N 1.34771 * 120.00202 * 179.97438 * 11 10 9 14 14 C 1.47016 * 125.65064 * 0.04417 * 13 11 10 15 15 C 1.54319 * 107.27362 * 178.90360 * 14 13 11 16 16 C 1.55156 * 102.94211 * 337.80410 * 15 14 13 17 17 H 1.08993 * 111.03931 * 277.41401 * 16 15 14 18 18 C 1.53002 * 111.00461 * 153.57560 * 16 15 14 19 19 N 1.46495 * 109.47442 * 181.35486 * 18 16 15 20 20 C 1.39119 * 120.00408 * 180.02562 * 19 18 16 21 21 N 1.32563 * 120.10503 * 359.97208 * 20 19 18 22 22 C 1.32309 * 119.93978 * 179.73689 * 21 20 19 23 23 C 1.38065 * 120.16669 * 0.56922 * 22 21 20 24 24 N 1.32354 * 120.21994 * 359.42724 * 23 22 21 25 25 C 1.32069 * 120.05430 * 0.28117 * 24 23 22 26 26 F 1.35095 * 120.08487 * 180.02562 * 25 24 23 27 27 C 1.47426 * 125.64731 * 180.02562 * 13 11 10 28 28 H 0.97000 * 119.99993 * 359.97438 * 1 2 3 29 29 H 1.09000 * 109.47452 * 60.00436 * 10 9 7 30 30 H 1.09000 * 109.47504 * 300.00133 * 10 9 7 31 31 H 1.08998 * 109.88093 * 298.32360 * 14 13 11 32 32 H 1.09010 * 109.88201 * 59.33059 * 14 13 11 33 33 H 1.09007 * 110.72251 * 219.44423 * 15 14 13 34 34 H 1.08996 * 110.72355 * 96.16854 * 15 14 13 35 35 H 1.09001 * 109.47018 * 61.35502 * 18 16 15 36 36 H 1.09004 * 109.47317 * 301.35419 * 18 16 15 37 37 H 0.97001 * 119.99776 * 359.97438 * 19 18 16 38 38 H 1.08000 * 119.91814 * 180.29210 * 22 21 20 39 39 H 1.08002 * 119.89335 * 179.71344 * 23 22 21 40 40 H 1.08997 * 110.36722 * 85.32462 * 27 13 11 41 41 H 1.09008 * 110.46006 * 323.04659 * 27 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2124 6 1 1.8917 2.3964 1.2126 7 6 2.0103 -1.2022 -0.0005 8 1 3.0902 -1.2021 -0.0001 9 16 1.1292 -2.7280 -0.0005 10 6 2.5157 -3.8915 -0.0005 11 6 1.9872 -5.3028 -0.0012 12 8 0.7908 -5.5023 -0.0021 13 7 2.8439 -6.3432 -0.0018 14 6 4.3108 -6.2453 -0.0010 15 6 4.8661 -7.6848 0.0260 16 6 3.6839 -8.5024 0.6101 17 1 3.6682 -8.4449 1.6984 18 6 3.7392 -9.9579 0.1416 19 7 2.5926 -10.6899 0.6852 20 6 2.4280 -12.0404 0.3944 21 7 3.3073 -12.6669 -0.3748 22 6 3.1505 -13.9525 -0.6450 23 6 2.0667 -14.6410 -0.1374 24 7 1.1849 -14.0220 0.6313 25 6 1.3360 -12.7402 0.9113 26 9 0.4366 -12.1078 1.6963 27 6 2.4652 -7.7680 -0.0030 28 1 -0.4850 0.8400 0.0004 29 1 3.1243 -3.7315 0.8895 30 1 3.1243 -3.7315 -0.8905 31 1 4.6486 -5.7345 -0.9027 32 1 4.6454 -5.6997 0.8814 33 1 5.7384 -7.7496 0.6765 34 1 5.1089 -8.0236 -0.9811 35 1 4.6632 -10.4176 0.4925 36 1 3.7079 -9.9905 -0.9475 37 1 1.9484 -10.2331 1.2485 38 1 3.8696 -14.4637 -1.2679 39 1 1.9405 -15.6893 -0.3646 40 1 2.2875 -8.1124 -1.0217 41 1 1.5784 -7.9271 0.6107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098508763.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -19.225586 kcal Electronic energy + Delta-G solvation = -25672.939827 eV Core-core repulsion = 21629.063012 eV Total energy + Delta-G solvation = -4043.876815 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -49.37755 -41.36166 -39.99806 -37.91952 -36.43549 -34.25802 -32.61466 -32.44709 -30.54962 -29.69629 -28.71689 -26.26876 -25.48298 -24.66401 -23.96322 -22.77062 -20.97533 -19.47213 -18.90153 -18.39550 -18.02662 -17.64361 -16.89073 -16.65761 -16.58134 -15.62084 -15.40753 -15.14778 -14.82870 -14.77454 -14.43898 -14.36190 -14.03654 -13.92525 -13.71741 -13.46193 -13.11501 -12.74650 -12.60602 -12.39823 -12.10089 -11.91921 -11.80556 -11.65456 -11.35473 -11.11048 -11.08109 -11.03529 -10.77702 -10.60322 -9.82785 -9.73316 -9.46539 -9.09308 -8.57826 -8.33397 -8.25382 -6.52672 -6.23652 -3.94496 0.30744 0.66094 2.36834 2.85060 3.00934 3.03563 3.15369 3.20065 3.24217 3.29539 3.56993 3.69700 3.77816 4.10559 4.17809 4.19465 4.37727 4.56713 4.69099 4.81724 4.89049 4.98534 5.01681 5.03767 5.11623 5.25511 5.29249 5.43764 5.47933 5.56662 5.63359 5.66283 5.72660 5.85468 5.89840 6.10589 6.33389 6.36715 6.44720 6.92542 7.33148 7.57612 7.60339 8.33449 8.50236 9.21673 10.83865 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.028696 B = 0.001848 C = 0.001762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.527975 B =15149.570641 C =15886.845788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.146 4.146 11 C 0.548 3.452 12 O -0.515 6.515 13 N -0.627 5.627 14 C 0.102 3.898 15 C -0.119 4.119 16 C -0.120 4.120 17 H 0.094 0.906 18 C 0.144 3.856 19 N -0.707 5.707 20 C 0.354 3.646 21 N -0.480 5.480 22 C 0.097 3.903 23 C 0.009 3.991 24 N -0.431 5.431 25 C 0.198 3.802 26 F -0.106 7.106 27 C 0.112 3.888 28 H 0.268 0.732 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.418 0.582 38 H 0.178 0.822 39 H 0.176 0.824 40 H 0.067 0.933 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.033 -28.129 -0.300 31.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.165 5.835 10 C -0.297 4.297 11 C 0.337 3.663 12 O -0.388 6.388 13 N -0.365 5.365 14 C -0.022 4.022 15 C -0.157 4.157 16 C -0.139 4.139 17 H 0.112 0.888 18 C 0.020 3.980 19 N -0.341 5.341 20 C 0.111 3.889 21 N -0.204 5.204 22 C -0.063 4.063 23 C -0.151 4.151 24 N -0.150 5.150 25 C 0.032 3.968 26 F -0.085 7.085 27 C -0.011 4.011 28 H 0.078 0.922 29 H 0.107 0.893 30 H 0.107 0.893 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.256 0.744 38 H 0.195 0.805 39 H 0.193 0.807 40 H 0.085 0.915 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.163 -28.086 -0.364 30.225 hybrid contribution 1.535 1.512 0.362 2.185 sum 12.698 -26.574 -0.001 29.452 Atomic orbital electron populations 1.70026 1.05962 1.27378 1.46858 1.25003 0.95037 0.99059 0.94525 0.86107 0.79564 0.81841 0.77922 1.19612 1.20549 1.20546 1.22897 0.94922 0.91564 1.58934 0.90862 1.85420 1.04936 0.96399 1.96712 1.23506 1.06479 0.94901 1.04811 1.20061 0.85678 0.85495 0.75097 1.90720 1.14925 1.85124 1.48073 1.48485 1.06550 1.05519 1.75934 1.21998 0.80483 0.97242 1.02458 1.22603 0.97228 0.93591 1.02287 1.22681 0.96382 0.93253 1.01597 0.88765 1.21331 0.88323 0.89267 0.99067 1.44655 1.29610 1.05048 1.54750 1.19082 0.90038 0.87436 0.92327 1.68113 1.26853 1.10516 1.14872 1.23555 0.97105 0.89191 0.96465 1.23205 0.92260 1.01821 0.97813 1.67614 1.28538 1.07020 1.11848 1.18431 0.90023 0.89450 0.98892 1.91639 1.65961 1.79637 1.71306 1.22188 0.97155 0.80904 1.00875 0.92208 0.89278 0.89279 0.91024 0.91075 0.89487 0.89963 0.90648 0.90753 0.74428 0.80473 0.80700 0.91464 0.90479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.32 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 7 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.97 7.80 -52.49 -0.41 1.56 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.89 16 10 C -0.15 -2.99 5.35 36.01 0.19 -2.79 16 11 C 0.55 10.49 7.87 -10.99 -0.09 10.41 16 12 O -0.51 -11.94 16.12 5.55 0.09 -11.85 16 13 N -0.63 -8.64 3.33 -170.51 -0.57 -9.21 16 14 C 0.10 0.98 6.49 -3.07 -0.02 0.96 16 15 C -0.12 -0.74 6.42 -24.90 -0.16 -0.90 16 16 C -0.12 -0.84 3.11 -88.46 -0.27 -1.11 16 17 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 18 C 0.14 0.92 5.17 -4.04 -0.02 0.90 16 19 N -0.71 -5.40 5.56 -60.21 -0.33 -5.74 16 20 C 0.35 3.16 7.50 -154.58 -1.16 2.00 16 21 N -0.48 -3.89 9.73 -12.17 -0.12 -4.01 16 22 C 0.10 0.53 11.21 -17.41 -0.20 0.34 16 23 C 0.01 0.05 11.21 -17.39 -0.19 -0.14 16 24 N -0.43 -4.23 10.50 -13.24 -0.14 -4.37 16 25 C 0.20 2.01 8.47 -16.93 -0.14 1.86 16 26 F -0.11 -1.15 16.68 2.25 0.04 -1.11 16 27 C 0.11 1.23 6.08 -2.52 -0.02 1.21 16 28 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 29 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 30 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.45 8.04 -51.93 -0.42 0.03 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.51 8.10 -51.93 -0.42 0.09 16 37 H 0.42 3.05 7.83 -40.82 -0.32 2.73 16 38 H 0.18 0.30 8.06 -52.49 -0.42 -0.12 16 39 H 0.18 0.47 8.06 -52.49 -0.42 0.05 16 40 H 0.07 0.74 8.00 -51.93 -0.42 0.32 16 41 H 0.08 0.93 8.04 -51.92 -0.42 0.52 16 LS Contribution 369.66 15.07 5.57 5.57 Total: -1.00 -36.82 369.66 -9.18 -46.00 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: -5.34 Total: -2.10 kcal Atomic # 6 Polarization: 1.67 SS G_CDS: -1.88 Total: -0.20 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.43 Total: -48.75 kcal Atomic # 8 Polarization: -11.94 SS G_CDS: 0.09 Total: -11.85 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -36.82 -9.18 -46.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508763.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.776 kcal (2) G-P(sol) polarization free energy of solvation -36.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds