Wall clock time and date at job start Sat Apr 11 2020 05:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52992 * 109.47624 * 2 1 4 4 H 1.09001 * 109.46997 * 305.48656 * 3 2 1 5 5 S 1.81404 * 109.47415 * 185.48586 * 3 2 1 6 6 C 1.81398 * 102.99770 * 67.23437 * 5 3 2 7 7 C 1.50697 * 109.46901 * 65.48436 * 3 2 1 8 8 O 1.21281 * 120.00033 * 35.00380 * 7 3 2 9 9 N 1.34777 * 120.00235 * 214.99822 * 7 3 2 10 10 C 1.48151 * 127.84074 * 180.02562 * 9 7 3 11 11 C 1.54386 * 104.61626 * 219.60881 * 10 9 7 12 12 H 1.09004 * 110.34821 * 95.00333 * 11 10 9 13 13 C 1.53006 * 110.34398 * 217.26297 * 11 10 9 14 14 F 1.39898 * 109.47148 * 175.53912 * 13 11 10 15 15 F 1.39905 * 109.46556 * 295.53863 * 13 11 10 16 16 F 1.39897 * 109.46918 * 55.53529 * 13 11 10 17 17 C 1.54285 * 104.96255 * 336.13221 * 11 10 9 18 18 H 1.08999 * 110.43229 * 241.08348 * 17 11 10 19 19 N 1.46501 * 110.34480 * 118.87349 * 17 11 10 20 20 C 1.36931 * 120.00202 * 158.00976 * 19 17 11 21 21 H 1.07994 * 120.00188 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99839 * 179.97438 * 20 19 17 23 23 N 1.31623 * 119.99664 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99991 * 0.27255 * 22 20 19 25 25 H 1.48500 * 109.47471 * 269.72451 * 24 22 20 26 26 H 1.48498 * 109.47233 * 29.72764 * 24 22 20 27 27 H 1.48506 * 109.47147 * 149.72726 * 24 22 20 28 28 C 1.48146 * 127.83802 * 0.03122 * 9 7 3 29 29 H 1.08999 * 109.46734 * 304.48399 * 1 2 3 30 30 H 1.08995 * 109.47073 * 64.47720 * 1 2 3 31 31 H 1.08995 * 109.47598 * 184.48723 * 1 2 3 32 32 H 1.09004 * 109.46671 * 239.99691 * 2 1 3 33 33 H 1.09001 * 109.46988 * 120.00679 * 2 1 3 34 34 H 1.08999 * 109.46787 * 174.80309 * 6 5 3 35 35 H 1.09006 * 109.46721 * 294.80076 * 6 5 3 36 36 H 1.08989 * 109.47325 * 54.80368 * 6 5 3 37 37 H 1.09000 * 110.40396 * 338.39210 * 10 9 7 38 38 H 1.09001 * 110.40950 * 100.70674 * 10 9 7 39 39 H 0.97003 * 119.99434 * 338.00882 * 19 17 11 40 40 H 0.97001 * 119.99360 * 180.02562 * 23 22 20 41 41 H 1.09003 * 110.40832 * 21.60279 * 28 9 7 42 42 H 1.09005 * 110.50431 * 259.22802 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5988 1.9838 -0.8368 5 16 3.8467 1.4449 -0.1635 6 6 4.1052 0.8138 -1.8444 7 6 1.6517 2.1125 1.2927 8 8 1.6297 1.4743 2.3238 9 7 1.3291 3.4210 1.3031 10 6 0.9255 4.2484 2.4639 11 6 -0.1982 5.1579 1.9222 12 1 -1.1742 4.7183 2.1285 13 6 -0.0998 6.5526 2.5437 14 9 -1.0609 7.3893 1.9663 15 9 -0.3245 6.4658 3.9219 16 9 1.1759 7.0776 2.3114 17 6 0.0466 5.2303 0.4007 18 1 0.2363 6.2590 0.0943 19 7 -1.1034 4.6872 -0.3267 20 6 -1.3189 5.0435 -1.6311 21 1 -0.6414 5.7252 -2.1237 22 6 -2.4082 4.5285 -2.3204 23 7 -2.6150 4.8706 -3.5744 24 14 -3.5843 3.3554 -1.4660 25 1 -3.1213 1.9584 -1.6643 26 1 -3.6223 3.6629 -0.0137 27 1 -4.9446 3.5122 -2.0409 28 6 1.2973 4.3583 0.1563 29 1 -0.3633 0.5818 0.8471 30 1 -0.3633 0.4428 -0.9273 31 1 -0.3634 -1.0244 0.0804 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 5.1662 0.8581 -2.0899 35 1 3.7617 -0.2191 -1.9014 36 1 3.5429 1.4233 -2.5518 37 1 0.5487 3.6166 3.2682 38 1 1.7661 4.8474 2.8143 39 1 -1.7121 4.0752 0.1159 40 1 -3.3764 4.5110 -4.0559 41 1 1.2010 3.8095 -0.7806 42 1 2.1951 4.9763 0.1433 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099240675.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:52 Heat of formation + Delta-G solvation = -170.616280 kcal Electronic energy + Delta-G solvation = -29512.061662 eV Core-core repulsion = 25010.930868 eV Total energy + Delta-G solvation = -4501.130794 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.01619 -47.52416 -47.43213 -40.13169 -37.95483 -34.52685 -34.26180 -32.21711 -31.04553 -29.06032 -28.18934 -28.07227 -25.59505 -24.25936 -22.56993 -21.74311 -20.58637 -19.35376 -18.41519 -18.32539 -18.07458 -17.37446 -17.09792 -16.54398 -15.68215 -15.33575 -14.89898 -14.58214 -14.44834 -14.25420 -14.15002 -14.01717 -13.89552 -13.85107 -13.64410 -13.61314 -13.46031 -13.17162 -12.98411 -12.95420 -12.63160 -12.46641 -12.13418 -11.91925 -11.86775 -11.57206 -11.40424 -11.16766 -11.02971 -10.99302 -10.85452 -10.34380 -10.07245 -9.82600 -9.79270 -9.32127 -8.71344 -7.82701 -7.55169 -5.97981 -3.37846 1.20573 2.31403 2.62223 2.94459 3.02672 3.22124 3.25188 3.32495 3.83947 3.92250 4.06938 4.38140 4.39698 4.58866 4.70629 4.81370 4.96713 4.99980 5.01387 5.06308 5.09917 5.25285 5.28164 5.40170 5.42925 5.55155 5.56470 5.68662 5.71097 5.84311 5.91465 5.95289 6.08281 6.12814 6.30291 6.34390 7.50392 7.72194 8.11120 8.18990 8.93447 9.66068 9.82123 11.18896 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.008136 B = 0.005863 C = 0.004102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3440.501832 B = 4774.306158 C = 6824.846440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.103 4.103 3 C -0.082 4.082 4 H 0.115 0.885 5 S -0.223 6.223 6 C -0.126 4.126 7 C 0.565 3.435 8 O -0.533 6.533 9 N -0.608 5.608 10 C 0.118 3.882 11 C -0.169 4.169 12 H 0.126 0.874 13 C 0.465 3.535 14 F -0.172 7.172 15 F -0.186 7.186 16 F -0.181 7.181 17 C 0.184 3.816 18 H 0.087 0.913 19 N -0.734 5.734 20 C -0.258 4.258 21 H 0.096 0.904 22 C 0.017 3.983 23 N -0.923 5.923 24 Si 0.878 3.122 25 H -0.282 1.282 26 H -0.277 1.277 27 H -0.288 1.288 28 C 0.073 3.927 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.070 0.930 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.364 0.636 40 H 0.262 0.738 41 H 0.096 0.904 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.115 -4.227 8.084 13.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.143 4.143 3 C -0.213 4.213 4 H 0.133 0.867 5 S 0.004 5.996 6 C -0.294 4.294 7 C 0.352 3.648 8 O -0.410 6.410 9 N -0.341 5.341 10 C -0.006 4.006 11 C -0.190 4.190 12 H 0.144 0.856 13 C 0.410 3.590 14 F -0.153 7.153 15 F -0.168 7.168 16 F -0.162 7.162 17 C 0.071 3.929 18 H 0.104 0.896 19 N -0.376 5.376 20 C -0.387 4.387 21 H 0.113 0.887 22 C -0.180 4.180 23 N -0.569 5.569 24 Si 0.708 3.292 25 H -0.208 1.208 26 H -0.203 1.203 27 H -0.214 1.214 28 C -0.052 4.052 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.122 0.878 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.198 0.802 40 H 0.073 0.927 41 H 0.115 0.885 42 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 10.912 -4.219 9.090 14.816 hybrid contribution -1.947 -0.833 -0.442 2.163 sum 8.966 -5.053 8.648 13.442 Atomic orbital electron populations 1.21833 0.94591 1.02232 1.02677 1.21680 0.96827 0.92271 1.03510 1.23412 0.96120 1.01312 1.00429 0.86715 1.86921 1.05118 1.87014 1.20518 1.23494 1.06255 1.04091 0.95596 1.19102 0.76543 0.79817 0.89319 1.90691 1.53576 1.63073 1.33640 1.48749 1.66730 1.07903 1.10719 1.22143 0.95655 0.92837 0.89931 1.23876 1.04128 0.90675 1.00360 0.85586 1.20210 0.73760 0.88922 0.76084 1.93244 1.63847 1.74072 1.84139 1.93178 1.94493 1.96595 1.32501 1.93168 1.40307 1.88498 1.94248 1.21030 0.88284 0.97874 0.85671 0.89553 1.42779 1.27603 1.55103 1.12145 1.19002 1.09764 1.24362 0.85564 0.88672 1.24641 0.98044 0.99671 0.95694 1.69689 1.30906 1.47214 1.09098 0.86664 0.81700 0.81709 0.79100 1.20800 1.20328 1.21445 1.23609 0.99542 0.92077 0.89976 0.92389 0.92073 0.92074 0.91129 0.89631 0.87812 0.90220 0.89850 0.88720 0.89805 0.80199 0.92746 0.88541 0.90562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.80 37.16 0.36 -1.74 16 2 C -0.10 -1.32 5.13 -26.74 -0.14 -1.46 16 3 C -0.08 -1.13 2.36 -27.89 -0.07 -1.19 16 4 H 0.11 1.61 6.34 -51.92 -0.33 1.28 16 5 S -0.22 -2.81 21.76 -107.50 -2.34 -5.15 16 6 C -0.13 -1.14 10.42 101.05 1.05 -0.09 16 7 C 0.57 8.96 5.90 -10.99 -0.06 8.90 16 8 O -0.53 -9.71 16.29 5.56 0.09 -9.62 16 9 N -0.61 -8.99 3.32 -169.29 -0.56 -9.55 16 10 C 0.12 1.56 6.38 -2.41 -0.02 1.55 16 11 C -0.17 -2.36 2.84 -89.22 -0.25 -2.61 16 12 H 0.13 1.78 7.64 -51.93 -0.40 1.38 16 13 C 0.46 6.34 2.53 37.16 0.09 6.43 16 14 F -0.17 -2.68 16.93 2.25 0.04 -2.65 16 15 F -0.19 -2.44 17.17 2.25 0.04 -2.40 16 16 F -0.18 -2.39 16.05 2.25 0.04 -2.36 16 17 C 0.18 3.00 2.99 -66.52 -0.20 2.80 16 18 H 0.09 1.45 7.37 -51.93 -0.38 1.07 16 19 N -0.73 -15.04 4.94 -52.06 -0.26 -15.30 16 20 C -0.26 -6.43 10.45 -15.06 -0.16 -6.59 16 21 H 0.10 2.54 8.06 -52.49 -0.42 2.12 16 22 C 0.02 0.45 5.50 -17.43 -0.10 0.35 16 23 N -0.92 -26.86 13.97 55.49 0.78 -26.09 16 24 Si 0.88 20.50 27.74 -169.99 -4.71 15.78 16 25 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.12 6.52 56.52 0.37 -5.75 16 27 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 28 C 0.07 1.08 6.63 -2.39 -0.02 1.06 16 29 H 0.06 0.89 7.16 -51.93 -0.37 0.51 16 30 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.76 6.99 -51.93 -0.36 0.40 16 33 H 0.09 1.16 7.66 -51.93 -0.40 0.76 16 34 H 0.10 0.78 8.14 -51.92 -0.42 0.36 16 35 H 0.08 0.64 7.31 -51.92 -0.38 0.26 16 36 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.24 7.88 -51.93 -0.41 0.84 16 38 H 0.08 1.01 7.22 -51.93 -0.37 0.63 16 39 H 0.36 7.55 5.36 -40.82 -0.22 7.33 16 40 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 41 H 0.10 1.54 6.34 -51.93 -0.33 1.21 16 42 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 364.16 15.07 5.49 5.49 Total: -1.00 -29.47 364.16 -6.56 -36.02 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.66 Total: 8.40 kcal Atomic # 6 Polarization: 6.91 SS G_CDS: 0.51 Total: 7.42 kcal Atomic # 7 Polarization: -50.89 SS G_CDS: -0.04 Total: -50.93 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 0.11 Total: -7.40 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -4.71 Total: 15.78 kcal Atomic # 16 Polarization: -2.81 SS G_CDS: -2.34 Total: -5.15 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -29.47 -6.56 -36.02 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099240675.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.594 kcal (2) G-P(sol) polarization free energy of solvation -29.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -170.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds