Wall clock time and date at job start Sat Apr 11 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52996 * 109.46778 * 2 1 4 4 H 1.09003 * 109.47408 * 304.99817 * 3 2 1 5 5 S 1.81399 * 109.47288 * 65.00084 * 3 2 1 6 6 C 1.81406 * 103.00148 * 184.99628 * 5 3 2 7 7 C 1.50702 * 109.46823 * 184.99900 * 3 2 1 8 8 O 1.21283 * 120.00262 * 330.00285 * 7 3 2 9 9 N 1.34777 * 119.99928 * 149.72191 * 7 3 2 10 10 C 1.48150 * 127.83971 * 179.97438 * 9 7 3 11 11 C 1.53983 * 104.81936 * 219.53841 * 10 9 7 12 12 H 1.09001 * 110.24492 * 95.28094 * 11 10 9 13 13 C 1.53001 * 110.48678 * 217.46529 * 11 10 9 14 14 F 1.39898 * 109.46914 * 175.67375 * 13 11 10 15 15 F 1.39904 * 109.47189 * 295.67377 * 13 11 10 16 16 F 1.39897 * 109.47120 * 55.67705 * 13 11 10 17 17 C 1.54283 * 105.00386 * 336.43697 * 11 10 9 18 18 H 1.08997 * 110.34544 * 240.93813 * 17 11 10 19 19 N 1.46497 * 110.34512 * 118.67488 * 17 11 10 20 20 C 1.36939 * 119.99976 * 158.01402 * 19 17 11 21 21 H 1.07996 * 119.99786 * 359.97438 * 20 19 17 22 22 C 1.38812 * 119.99720 * 180.02562 * 20 19 17 23 23 N 1.31616 * 120.00229 * 359.97438 * 22 20 19 24 24 Si 1.86798 * 119.99744 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47010 * 89.99939 * 24 22 20 26 26 H 1.48499 * 109.47029 * 209.99885 * 24 22 20 27 27 H 1.48496 * 109.47300 * 329.99937 * 24 22 20 28 28 C 1.48145 * 127.83783 * 0.30631 * 9 7 3 29 29 H 1.08999 * 109.46803 * 300.00095 * 1 2 3 30 30 H 1.09003 * 109.47019 * 59.99858 * 1 2 3 31 31 H 1.09001 * 109.46866 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.46803 * 239.99905 * 2 1 3 33 33 H 1.08994 * 109.46885 * 119.99877 * 2 1 3 34 34 H 1.09001 * 109.46853 * 299.99938 * 6 5 3 35 35 H 1.08996 * 109.46911 * 59.99660 * 6 5 3 36 36 H 1.09001 * 109.46938 * 180.02562 * 6 5 3 37 37 H 1.08997 * 110.40285 * 338.37725 * 10 9 7 38 38 H 1.09001 * 110.40312 * 100.80025 * 10 9 7 39 39 H 0.97000 * 119.99963 * 338.00591 * 19 17 11 40 40 H 0.97005 * 120.00303 * 180.02562 * 23 22 20 41 41 H 1.08998 * 110.40471 * 259.19507 * 28 9 7 42 42 H 1.09000 * 110.40695 * 21.50861 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 16 1.5601 2.2535 1.5500 6 6 2.1077 3.9650 1.3017 7 6 3.5419 1.4443 -0.1238 8 8 4.1884 0.5205 0.3231 9 7 4.1663 2.4698 -0.7362 10 6 5.6209 2.6492 -0.9527 11 6 5.8730 4.1490 -0.7113 12 1 6.1962 4.3165 0.3161 13 6 6.9212 4.6803 -1.6911 14 9 7.0618 6.0616 -1.5198 15 9 8.1477 4.0529 -1.4474 16 9 6.5125 4.4122 -3.0019 17 6 4.5108 4.8284 -0.9626 18 1 4.5883 5.5406 -1.7841 19 7 4.0447 5.5001 0.2530 20 6 3.1295 6.5151 0.1665 21 1 2.7517 6.8206 -0.7980 22 6 2.6884 7.1519 1.3183 23 7 3.1493 6.7798 2.4936 24 14 1.4405 8.5369 1.2002 25 1 0.0683 7.9752 1.2833 26 1 1.6532 9.4914 2.3176 27 1 1.6078 9.2449 -0.0943 28 6 3.5544 3.6765 -1.3395 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 3.1850 3.9814 1.1364 35 1 1.6005 4.3864 0.4338 36 1 1.8672 4.5553 2.1858 37 1 6.1879 2.0499 -0.2404 38 1 5.8889 2.3809 -1.9746 39 1 4.3843 5.2259 1.1192 40 1 2.8407 7.2246 3.2986 41 1 3.4947 3.5712 -2.4227 42 1 2.5634 3.8503 -0.9201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001099240679.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:55 Heat of formation + Delta-G solvation = -160.842764 kcal Electronic energy + Delta-G solvation = -30028.509823 eV Core-core repulsion = 25527.802840 eV Total energy + Delta-G solvation = -4500.706983 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.117 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.99053 -47.49909 -47.40553 -40.06539 -37.87042 -34.49832 -34.31543 -32.30386 -30.91919 -28.45960 -27.80137 -27.43271 -25.43241 -24.40410 -22.59058 -21.62206 -20.49044 -19.44779 -18.41039 -18.13046 -17.99848 -17.02777 -16.81959 -16.46412 -15.65508 -15.19893 -14.91221 -14.52620 -14.45079 -14.31032 -13.91499 -13.87030 -13.77908 -13.60077 -13.54586 -13.48122 -13.32494 -13.15727 -12.65940 -12.34781 -12.23711 -11.87282 -11.83486 -11.79511 -11.55130 -11.32209 -11.09438 -11.03616 -10.99257 -10.93249 -10.70147 -10.31867 -10.03276 -9.97601 -9.52439 -9.06002 -8.65064 -7.35185 -7.17973 -6.07106 -3.41222 1.76431 2.69688 2.85866 3.04024 3.26424 3.31770 3.33995 3.35914 3.88212 3.98403 4.11638 4.35744 4.50987 4.73282 4.78677 4.88177 5.09310 5.13505 5.19289 5.31606 5.37638 5.41194 5.50191 5.63033 5.74202 5.80582 5.87004 5.95021 5.98228 5.99876 6.17629 6.26604 6.34485 6.37819 6.45898 7.15302 7.43884 7.60081 8.06085 8.24018 9.19804 9.64518 10.00737 11.12397 Molecular weight = 340.12amu Principal moments of inertia in cm(-1) A = 0.007772 B = 0.006860 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3601.758454 B = 4080.419589 C = 6997.369278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.089 4.089 3 C -0.071 4.071 4 H 0.100 0.900 5 S -0.263 6.263 6 C -0.102 4.102 7 C 0.546 3.454 8 O -0.535 6.535 9 N -0.613 5.613 10 C 0.117 3.883 11 C -0.166 4.166 12 H 0.129 0.871 13 C 0.465 3.535 14 F -0.173 7.173 15 F -0.186 7.186 16 F -0.183 7.183 17 C 0.176 3.824 18 H 0.080 0.920 19 N -0.706 5.706 20 C -0.259 4.259 21 H 0.075 0.925 22 C 0.005 3.995 23 N -0.919 5.919 24 Si 0.904 3.096 25 H -0.287 1.287 26 H -0.290 1.290 27 H -0.280 1.280 28 C 0.058 3.942 29 H 0.070 0.930 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.110 0.890 35 H 0.077 0.923 36 H 0.111 0.889 37 H 0.094 0.906 38 H 0.079 0.921 39 H 0.390 0.610 40 H 0.260 0.740 41 H 0.068 0.932 42 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.951 -7.976 -8.453 11.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.127 4.127 3 C -0.203 4.203 4 H 0.118 0.882 5 S -0.037 6.037 6 C -0.269 4.269 7 C 0.332 3.668 8 O -0.412 6.412 9 N -0.348 5.348 10 C -0.006 4.006 11 C -0.188 4.188 12 H 0.147 0.853 13 C 0.410 3.590 14 F -0.154 7.154 15 F -0.168 7.168 16 F -0.165 7.165 17 C 0.064 3.936 18 H 0.098 0.902 19 N -0.349 5.349 20 C -0.389 4.389 21 H 0.093 0.907 22 C -0.193 4.193 23 N -0.564 5.564 24 Si 0.734 3.266 25 H -0.214 1.214 26 H -0.216 1.216 27 H -0.206 1.206 28 C -0.068 4.068 29 H 0.089 0.911 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.112 0.888 38 H 0.097 0.903 39 H 0.227 0.773 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 0.618 -8.796 -7.286 11.439 hybrid contribution 0.262 1.646 -0.942 1.914 sum 0.881 -7.150 -8.229 10.937 Atomic orbital electron populations 1.21835 0.94577 1.01678 1.02900 1.21165 0.96334 0.91648 1.03566 1.23245 0.93996 1.02161 1.00859 0.88188 1.86808 1.79702 1.13832 1.23375 1.24525 1.07138 0.88410 1.06874 1.20123 0.89483 0.80658 0.76543 1.90672 1.67125 1.35152 1.48206 1.48853 1.07133 1.21547 1.57239 1.22032 0.83200 0.92866 1.02518 1.23798 0.96579 0.97875 1.00505 0.85333 1.20261 0.81730 0.76201 0.80801 1.93237 1.96002 1.30894 1.95243 1.93177 1.46999 1.82393 1.94219 1.93155 1.90255 1.93645 1.39447 1.21063 0.87260 0.92273 0.93047 0.90244 1.42724 1.50403 1.39584 1.02174 1.19128 1.16620 1.09839 0.93308 0.90672 1.24712 0.99995 0.99376 0.95228 1.69641 1.45979 1.43654 0.97155 0.86263 0.81149 0.81963 0.77255 1.21378 1.21623 1.20584 1.23837 1.00962 0.84547 0.97420 0.91127 0.92742 0.92508 0.91024 0.90110 0.87146 0.90383 0.87082 0.88780 0.90271 0.77314 0.92964 0.91350 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.74 37.16 0.36 -1.33 16 2 C -0.09 -1.16 4.91 -26.73 -0.13 -1.29 16 3 C -0.07 -1.06 2.11 -27.88 -0.06 -1.12 16 4 H 0.10 1.35 7.05 -51.92 -0.37 0.99 16 5 S -0.26 -4.48 20.59 -107.50 -2.21 -6.69 16 6 C -0.10 -1.92 6.48 101.05 0.65 -1.27 16 7 C 0.55 9.06 6.63 -10.98 -0.07 8.99 16 8 O -0.53 -10.32 16.55 5.55 0.09 -10.22 16 9 N -0.61 -9.20 2.95 -169.55 -0.50 -9.70 16 10 C 0.12 1.60 6.37 -2.62 -0.02 1.58 16 11 C -0.17 -2.35 2.82 -89.43 -0.25 -2.60 16 12 H 0.13 1.91 7.64 -51.93 -0.40 1.52 16 13 C 0.46 6.38 2.53 37.16 0.09 6.48 16 14 F -0.17 -2.70 16.92 2.25 0.04 -2.66 16 15 F -0.19 -2.50 17.17 2.25 0.04 -2.47 16 16 F -0.18 -2.42 16.05 2.25 0.04 -2.38 16 17 C 0.18 2.79 2.95 -66.53 -0.20 2.60 16 18 H 0.08 1.28 7.37 -51.93 -0.38 0.90 16 19 N -0.71 -13.91 2.89 -52.07 -0.15 -14.06 16 20 C -0.26 -5.78 8.27 -15.06 -0.12 -5.90 16 21 H 0.08 1.66 7.83 -52.49 -0.41 1.25 16 22 C 0.00 0.12 4.95 -17.43 -0.09 0.03 16 23 N -0.92 -23.36 12.32 55.49 0.68 -22.68 16 24 Si 0.90 19.79 29.55 -169.99 -5.02 14.76 16 25 H -0.29 -6.33 7.11 56.52 0.40 -5.92 16 26 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 27 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 28 C 0.06 0.83 5.46 -2.41 -0.01 0.82 16 29 H 0.07 0.86 7.13 -51.93 -0.37 0.49 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.08 1.17 8.02 -51.93 -0.42 0.75 16 34 H 0.11 2.16 3.54 -51.92 -0.18 1.97 16 35 H 0.08 1.47 6.02 -51.93 -0.31 1.16 16 36 H 0.11 2.42 7.35 -51.92 -0.38 2.03 16 37 H 0.09 1.32 7.88 -51.93 -0.41 0.91 16 38 H 0.08 0.96 7.21 -51.93 -0.37 0.59 16 39 H 0.39 8.46 6.31 -40.82 -0.26 8.21 16 40 H 0.26 6.64 8.31 -40.82 -0.34 6.31 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 42 H 0.10 1.55 3.83 -51.93 -0.20 1.35 16 LS Contribution 347.57 15.07 5.24 5.24 Total: -1.00 -25.27 347.57 -6.89 -32.16 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -5.29 Total: 11.71 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 0.16 Total: 6.99 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.03 Total: -46.44 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.09 Total: -10.22 kcal Atomic # 9 Polarization: -7.63 SS G_CDS: 0.11 Total: -7.51 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.76 kcal Atomic # 16 Polarization: -4.48 SS G_CDS: -2.21 Total: -6.69 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -25.27 -6.89 -32.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001099240679.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.679 kcal (2) G-P(sol) polarization free energy of solvation -25.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds