Wall clock time and date at job start Sat Apr 11 2020 05:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86798 * 119.99940 * 2 1 4 4 H 1.48500 * 109.47142 * 239.99615 * 3 2 1 5 5 H 1.48496 * 109.47439 * 359.97438 * 3 2 1 6 6 H 1.48510 * 109.47076 * 119.99793 * 3 2 1 7 7 C 1.38798 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99649 * 180.02562 * 7 2 1 9 9 S 1.76202 * 120.00130 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99809 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47039 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00155 * 0.02562 * 11 10 9 13 13 N 1.34774 * 120.00334 * 179.97438 * 11 10 9 14 14 C 1.46494 * 120.00454 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47430 * 184.43111 * 14 13 11 16 16 H 1.08993 * 110.46251 * 52.12047 * 15 14 13 17 17 C 1.54380 * 110.41037 * 289.70587 * 15 14 13 18 18 C 1.54263 * 105.06152 * 217.36921 * 17 15 14 19 19 C 1.54377 * 105.05789 * 359.97438 * 18 17 15 20 20 N 1.48559 * 104.59791 * 23.85379 * 19 18 17 21 21 C 1.38576 * 111.00232 * 200.96146 * 20 19 18 22 22 C 1.39463 * 120.50899 * 283.77836 * 21 20 19 23 23 C 1.38477 * 118.30566 * 179.74513 * 22 21 20 24 24 F 1.35103 * 120.43012 * 180.22456 * 23 22 21 25 25 N 1.32786 * 119.14020 * 0.25198 * 23 22 21 26 26 C 1.31760 * 120.96264 * 0.02562 * 25 23 22 27 27 N 1.31758 * 121.86048 * 359.97438 * 26 25 23 28 28 H 0.96996 * 119.99856 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.46926 * 60.00227 * 10 9 7 30 30 H 1.09005 * 109.47158 * 299.99940 * 10 9 7 31 31 H 0.96999 * 119.99486 * 0.02562 * 13 11 10 32 32 H 1.09000 * 109.47160 * 64.42815 * 14 13 11 33 33 H 1.09009 * 109.47163 * 304.43071 * 14 13 11 34 34 H 1.09001 * 110.32229 * 336.26268 * 17 15 14 35 35 H 1.08999 * 110.32579 * 98.37062 * 17 15 14 36 36 H 1.08999 * 110.32444 * 118.88974 * 18 17 15 37 37 H 1.08994 * 110.32226 * 241.00313 * 18 17 15 38 38 H 1.09010 * 110.41375 * 265.07217 * 19 18 17 39 39 H 1.09003 * 110.41174 * 142.63586 * 19 18 17 40 40 H 1.08001 * 120.85082 * 0.02562 * 22 21 20 41 41 H 1.08001 * 119.06888 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2854 2.7465 -0.0006 6 1 3.1040 1.6964 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9874 -5.3027 0.0012 12 8 0.7911 -5.5023 0.0011 13 7 2.8441 -6.3431 0.0008 14 6 2.3304 -7.7151 0.0008 15 6 3.4984 -8.6971 0.1117 16 1 4.1337 -8.4393 0.9590 17 6 4.3206 -8.7055 -1.1949 18 6 4.7394 -10.1766 -1.3955 19 6 4.1355 -10.9330 -0.1928 20 7 2.9954 -10.0881 0.2468 21 6 2.6486 -10.3658 1.5594 22 6 1.9317 -11.5201 1.8733 23 6 1.6139 -11.7552 3.2004 24 9 0.9246 -12.8623 3.5533 25 7 1.9951 -10.8782 4.1217 26 6 2.6669 -9.7945 3.7892 27 7 2.9896 -9.5325 2.5389 28 1 -0.4850 0.8400 -0.0004 29 1 3.1244 -3.7314 0.8906 30 1 3.1245 -3.7314 -0.8895 31 1 3.8008 -6.1835 0.0004 32 1 1.7872 -7.8997 -0.9260 33 1 1.6591 -7.8517 0.8487 34 1 3.7069 -8.3693 -2.0305 35 1 5.2005 -8.0703 -1.0926 36 1 4.3312 -10.5624 -2.3296 37 1 5.8258 -10.2646 -1.3928 38 1 4.8709 -11.0252 0.6066 39 1 3.7827 -11.9172 -0.5011 40 1 1.6358 -12.2153 1.1015 41 1 2.9620 -9.1019 4.5636 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100787703.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:05 Heat of formation + Delta-G solvation = -35.603498 kcal Electronic energy + Delta-G solvation = -26166.764274 eV Core-core repulsion = 22122.177260 eV Total energy + Delta-G solvation = -4044.587014 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.35837 -42.46827 -40.77915 -39.89015 -35.99891 -34.95197 -34.57182 -33.51792 -31.99661 -31.18975 -29.95745 -27.67411 -26.19840 -25.71565 -24.85994 -22.46150 -21.80440 -21.49205 -19.90935 -19.59493 -19.11518 -17.80772 -17.69203 -17.44657 -17.23605 -16.86679 -16.72169 -16.58917 -16.15374 -15.95057 -15.76961 -15.44020 -15.13092 -15.02640 -14.67167 -14.52044 -14.23141 -13.93363 -13.53629 -13.49898 -13.15801 -13.03485 -12.84946 -12.61123 -12.32083 -12.23102 -11.96596 -11.73577 -11.71825 -11.44371 -11.11625 -11.01798 -10.97275 -10.71026 -10.26355 -10.16325 -9.89167 -8.66036 -8.33273 -6.11661 -0.37657 -0.33429 1.26521 1.45153 1.46852 1.56361 1.60901 1.91729 2.18788 2.28700 2.38256 2.50870 2.94917 3.00839 3.30318 3.37311 3.52903 3.60431 3.81817 3.92726 3.97424 4.04458 4.13099 4.24602 4.31543 4.36037 4.45349 4.52478 4.59190 4.64480 4.81061 4.87159 4.93173 5.08358 5.14172 5.17793 5.34838 5.42905 5.43723 5.70708 5.75801 6.20962 6.48926 6.76454 7.07819 7.23724 8.75768 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016870 B = 0.002214 C = 0.002051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.309911 B =12643.387378 C =13650.270450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.156 6.156 10 C -0.126 4.126 11 C 0.535 3.465 12 O -0.569 6.569 13 N -0.704 5.704 14 C 0.148 3.852 15 C 0.065 3.935 16 H 0.096 0.904 17 C -0.125 4.125 18 C -0.116 4.116 19 C 0.045 3.955 20 N -0.458 5.458 21 C 0.363 3.637 22 C -0.241 4.241 23 C 0.355 3.645 24 F -0.102 7.102 25 N -0.585 5.585 26 C 0.354 3.646 27 N -0.567 5.567 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.417 0.583 32 H 0.059 0.941 33 H 0.037 0.963 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.097 0.903 38 H 0.061 0.939 39 H 0.111 0.889 40 H 0.183 0.817 41 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.003 -26.829 0.277 31.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.186 1.186 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.071 5.929 10 C -0.277 4.277 11 C 0.321 3.679 12 O -0.447 6.447 13 N -0.359 5.359 14 C 0.023 3.977 15 C -0.043 4.043 16 H 0.114 0.886 17 C -0.163 4.163 18 C -0.153 4.153 19 C -0.079 4.079 20 N -0.178 5.178 21 C 0.124 3.876 22 C -0.267 4.267 23 C 0.196 3.804 24 F -0.081 7.081 25 N -0.308 5.308 26 C 0.066 3.934 27 N -0.287 5.287 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.255 0.745 32 H 0.078 0.922 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.115 0.885 36 H 0.105 0.895 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.129 0.871 40 H 0.200 0.800 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 13.645 -26.648 0.594 29.945 hybrid contribution 1.478 0.642 0.235 1.628 sum 15.123 -26.007 0.829 30.096 Atomic orbital electron populations 1.70186 1.08039 1.28650 1.48048 1.26153 0.95961 1.03401 0.93771 0.84994 0.77775 0.75605 0.79558 1.18519 1.20562 1.18608 1.23174 0.95387 0.91862 1.58827 0.89708 1.85645 1.10758 0.99395 1.97068 1.23346 1.03461 0.93896 1.07036 1.20104 0.86125 0.86733 0.74986 1.90702 1.17669 1.86136 1.50230 1.45497 1.10333 1.04522 1.75546 1.20952 0.95861 0.80097 1.00790 1.22799 0.94747 0.85965 1.00744 0.88616 1.22513 1.00081 0.98476 0.95209 1.22334 1.02015 0.93276 0.97721 1.23372 0.88792 0.97660 0.98093 1.62500 1.36440 1.06532 1.12340 1.20342 0.89194 0.88188 0.89834 1.22210 1.05559 1.02357 0.96545 1.18352 0.89306 0.83274 0.89505 1.91674 1.75431 1.47933 1.93024 1.67904 1.17415 1.06057 1.39398 1.25242 0.86267 0.89698 0.92193 1.68535 1.24603 1.33796 1.01763 0.92038 0.87071 0.86780 0.74517 0.92236 0.94476 0.90786 0.88464 0.89540 0.88456 0.92083 0.87053 0.79955 0.75045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.34 13.22 21.65 0.29 -56.06 16 2 C 0.01 0.67 5.49 84.86 0.47 1.13 16 3 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 7 C -0.54 -30.94 9.50 67.95 0.65 -30.29 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 10 C -0.13 -4.91 6.16 71.23 0.44 -4.48 16 11 C 0.53 19.80 7.85 87.66 0.69 20.49 16 12 O -0.57 -27.12 15.86 -3.05 -0.05 -27.17 16 13 N -0.70 -17.55 5.45 -463.07 -2.52 -20.08 16 14 C 0.15 3.54 5.24 86.38 0.45 3.99 16 15 C 0.07 1.00 1.95 45.07 0.09 1.09 16 16 H 0.10 1.50 6.97 -2.39 -0.02 1.49 16 17 C -0.12 -1.24 6.35 31.49 0.20 -1.04 16 18 C -0.12 -0.70 7.00 31.49 0.22 -0.48 16 19 C 0.05 0.36 6.32 86.45 0.55 0.91 16 20 N -0.46 -6.74 5.07 -664.05 -3.37 -10.11 16 21 C 0.36 6.33 5.60 133.10 0.75 7.07 16 22 C -0.24 -3.81 9.95 22.62 0.22 -3.59 16 23 C 0.36 6.82 8.50 84.61 0.72 7.53 16 24 F -0.10 -1.95 17.30 44.97 0.78 -1.17 16 25 N -0.59 -12.16 10.45 -201.31 -2.10 -14.27 16 26 C 0.35 6.29 12.28 180.91 2.22 8.51 16 27 N -0.57 -10.70 8.44 -197.70 -1.67 -12.37 16 28 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.11 3.87 8.14 -2.39 -0.02 3.85 16 30 H 0.11 3.90 8.14 -2.39 -0.02 3.88 16 31 H 0.42 7.14 8.39 -92.71 -0.78 6.36 16 32 H 0.06 1.58 7.96 -2.39 -0.02 1.56 16 33 H 0.04 1.12 7.83 -2.38 -0.02 1.10 16 34 H 0.07 0.91 7.73 -2.39 -0.02 0.89 16 35 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 36 H 0.09 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.06 0.49 7.97 -2.38 -0.02 0.47 16 39 H 0.11 0.56 8.14 -2.39 -0.02 0.54 16 40 H 0.18 1.96 8.06 -2.91 -0.02 1.94 16 41 H 0.23 2.62 8.06 -2.91 -0.02 2.60 16 Total: -1.00 -80.99 367.35 0.17 -80.82 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: 0.29 Total: 14.00 kcal Atomic # 6 Polarization: 3.20 SS G_CDS: 7.66 Total: 10.86 kcal Atomic # 7 Polarization: -103.50 SS G_CDS: -9.38 Total: -112.88 kcal Atomic # 8 Polarization: -27.12 SS G_CDS: -0.05 Total: -27.17 kcal Atomic # 9 Polarization: -1.95 SS G_CDS: 0.78 Total: -1.17 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -80.99 0.17 -80.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100787703.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.221 kcal (2) G-P(sol) polarization free energy of solvation -80.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds