Wall clock time and date at job start Sat Apr 11 2020 05:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86800 * 120.00047 * 2 1 4 4 H 1.48498 * 109.47266 * 179.97438 * 3 2 1 5 5 H 1.48502 * 109.47335 * 300.00157 * 3 2 1 6 6 H 1.48502 * 109.47005 * 59.99778 * 3 2 1 7 7 C 1.38797 * 120.00090 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99917 * 179.97438 * 7 2 1 9 9 S 1.76195 * 119.99792 * 0.02562 * 7 2 1 10 10 C 1.81004 * 99.99959 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47062 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00516 * 359.97438 * 11 10 9 13 13 N 1.34785 * 119.99913 * 179.97438 * 11 10 9 14 14 C 1.46498 * 119.99940 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47039 * 180.02562 * 14 13 11 16 16 H 1.09009 * 110.72318 * 291.90392 * 15 14 13 17 17 C 1.54939 * 110.66571 * 168.81138 * 15 14 13 18 18 C 1.54593 * 102.91760 * 204.15231 * 17 15 14 19 19 C 1.53994 * 105.14216 * 21.95419 * 18 17 15 20 20 N 1.47899 * 107.06016 * 1.22765 * 19 18 17 21 21 C 1.39119 * 111.00315 * 214.15678 * 20 19 18 22 22 N 1.32557 * 120.10710 * 239.89778 * 21 20 19 23 23 C 1.32313 * 119.94358 * 179.97438 * 22 21 20 24 24 C 1.38064 * 120.16452 * 359.97438 * 23 22 21 25 25 N 1.32354 * 120.21924 * 0.02562 * 24 23 22 26 26 C 1.32066 * 120.05744 * 0.02562 * 25 24 23 27 27 F 1.35096 * 120.08422 * 180.02562 * 26 25 24 28 28 H 0.97007 * 119.99865 * 359.97438 * 1 2 3 29 29 H 1.08990 * 109.47318 * 59.99459 * 10 9 7 30 30 H 1.09007 * 109.46852 * 299.99502 * 10 9 7 31 31 H 0.96997 * 119.99978 * 0.02562 * 13 11 10 32 32 H 1.09004 * 109.47009 * 60.00675 * 14 13 11 33 33 H 1.08993 * 109.47305 * 300.00623 * 14 13 11 34 34 H 1.08994 * 110.72437 * 85.79023 * 17 15 14 35 35 H 1.08996 * 110.87398 * 322.57728 * 17 15 14 36 36 H 1.09002 * 110.30742 * 263.04084 * 18 17 15 37 37 H 1.08998 * 110.31346 * 140.87344 * 18 17 15 38 38 H 1.09004 * 109.91680 * 241.87196 * 19 18 17 39 39 H 1.08999 * 110.07990 * 120.67393 * 19 18 17 40 40 H 1.07991 * 119.91942 * 179.97438 * 23 22 21 41 41 H 1.07995 * 119.88791 * 180.28255 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8916 2.3965 -1.2125 6 1 1.8915 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0019 10 6 2.5158 -3.8914 -0.0013 11 6 1.9873 -5.3026 -0.0030 12 8 0.7911 -5.5023 -0.0040 13 7 2.8442 -6.3431 -0.0035 14 6 2.3304 -7.7151 -0.0045 15 6 3.5024 -8.6985 -0.0042 16 1 4.0431 -8.6546 -0.9497 17 6 3.0070 -10.1396 0.2760 18 6 4.2644 -10.8319 0.8500 19 6 5.1504 -9.6865 1.3739 20 7 4.4156 -8.4254 1.1351 21 6 5.2914 -7.3872 0.8342 22 7 5.3328 -6.3083 1.6031 23 6 6.1674 -5.3230 1.3142 24 6 6.9960 -5.4160 0.2139 25 7 6.9601 -6.4903 -0.5583 26 6 6.1297 -7.4784 -0.2786 27 9 6.0929 -8.5755 -1.0662 28 1 -0.4850 0.8401 0.0004 29 1 3.1238 -3.7317 0.8890 30 1 3.1251 -3.7309 -0.8909 31 1 3.8009 -6.1835 -0.0023 32 1 1.7221 -7.8745 -0.8949 33 1 1.7215 -7.8757 0.8851 34 1 2.6872 -10.6238 -0.6466 35 1 2.1998 -10.1372 1.0085 36 1 4.7836 -11.3835 0.0662 37 1 3.9892 -11.5006 1.6655 38 1 6.0972 -9.6726 0.8339 39 1 5.3336 -9.8132 2.4409 40 1 6.2005 -4.4440 1.9407 41 1 7.6788 -4.6112 -0.0152 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100787965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:12 Heat of formation + Delta-G solvation = -25.013028 kcal Electronic energy + Delta-G solvation = -27707.071677 eV Core-core repulsion = 23662.943900 eV Total energy + Delta-G solvation = -4044.127777 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.59260 -42.61050 -40.83252 -39.97802 -35.86867 -35.69926 -34.58158 -33.77263 -32.11252 -30.47645 -30.15267 -27.69300 -26.25716 -25.78564 -25.03456 -22.51996 -22.18214 -21.48568 -19.94920 -19.56258 -19.36587 -18.69936 -17.95960 -17.63836 -17.49070 -16.88707 -16.85472 -16.30568 -16.20624 -15.84914 -15.74412 -15.46946 -15.05561 -14.85726 -14.71410 -14.47279 -14.17205 -13.87635 -13.43984 -13.37969 -13.16412 -13.16185 -12.96510 -12.90582 -12.64727 -12.41499 -12.36213 -12.25246 -11.71669 -11.53046 -11.15668 -11.07143 -10.96550 -10.35319 -10.30462 -10.20365 -9.68737 -8.68800 -8.34256 -6.13359 -0.75760 -0.30763 1.23040 1.43092 1.45601 1.49648 1.58119 1.87065 2.01744 2.21370 2.24167 2.26756 2.83056 3.00307 3.25818 3.28602 3.42632 3.51610 3.73704 3.83405 3.87296 3.92608 4.01669 4.09332 4.15917 4.28490 4.36304 4.42620 4.45017 4.60861 4.70628 4.83393 4.94136 4.98211 5.09059 5.16213 5.26018 5.42314 5.49991 5.52364 5.93515 6.20047 6.22417 6.43256 7.05834 7.06954 8.75325 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016217 B = 0.003219 C = 0.002812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.198391 B = 8697.485188 C = 9954.250184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.001 2.999 4 H -0.252 1.252 5 H -0.276 1.276 6 H -0.274 1.274 7 C -0.545 4.545 8 H 0.085 0.915 9 S -0.142 6.142 10 C -0.127 4.127 11 C 0.532 3.468 12 O -0.557 6.557 13 N -0.717 5.717 14 C 0.130 3.870 15 C 0.053 3.947 16 H 0.074 0.926 17 C -0.106 4.106 18 C -0.118 4.118 19 C 0.039 3.961 20 N -0.476 5.476 21 C 0.225 3.775 22 N -0.418 5.418 23 C 0.057 3.943 24 C 0.093 3.907 25 N -0.478 5.478 26 C 0.214 3.786 27 F -0.101 7.101 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.100 0.900 31 H 0.391 0.609 32 H 0.079 0.921 33 H 0.071 0.929 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.098 0.902 38 H 0.049 0.951 39 H 0.094 0.906 40 H 0.219 0.781 41 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.504 -20.607 1.606 27.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.822 3.178 4 H -0.176 1.176 5 H -0.201 1.201 6 H -0.199 1.199 7 C -0.693 4.693 8 H 0.103 0.897 9 S 0.085 5.915 10 C -0.278 4.278 11 C 0.318 3.682 12 O -0.435 6.435 13 N -0.371 5.371 14 C 0.006 3.994 15 C -0.054 4.054 16 H 0.092 0.908 17 C -0.145 4.145 18 C -0.156 4.156 19 C -0.087 4.087 20 N -0.199 5.199 21 C -0.009 4.009 22 N -0.133 5.133 23 C -0.104 4.104 24 C -0.066 4.066 25 N -0.199 5.199 26 C 0.054 3.946 27 F -0.080 7.080 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.118 0.882 31 H 0.228 0.772 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.122 0.878 35 H 0.105 0.895 36 H 0.106 0.894 37 H 0.116 0.884 38 H 0.068 0.932 39 H 0.112 0.888 40 H 0.235 0.765 41 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 16.057 -20.811 2.055 26.366 hybrid contribution 2.385 1.050 -0.860 2.745 sum 18.443 -19.761 1.195 27.057 Atomic orbital electron populations 1.70195 1.08055 1.28592 1.47982 1.26155 0.95975 1.03373 0.93657 0.84881 0.78801 0.76111 0.77999 1.17582 1.20109 1.19950 1.23231 0.95432 0.91707 1.58930 0.89665 1.85609 1.09844 0.99072 1.96991 1.23315 1.03948 0.94498 1.06017 1.20119 0.86264 0.86685 0.75102 1.90678 1.16838 1.86037 1.49938 1.45962 1.09361 1.06031 1.75774 1.21517 0.95998 0.79031 1.02848 1.23371 0.92417 0.97415 0.92191 0.90807 1.22506 0.98681 0.89993 1.03301 1.22388 0.94692 0.96407 1.02070 1.23108 0.96060 0.86539 1.02974 1.61619 1.15831 1.03922 1.38574 1.20841 0.94191 0.94887 0.90969 1.68365 1.18559 0.99330 1.27068 1.24648 0.90461 0.97982 0.97277 1.24439 0.97954 0.94406 0.89774 1.67799 1.19550 1.01390 1.31134 1.20228 0.97041 0.86173 0.91205 1.91603 1.94689 1.48507 1.73243 0.91982 0.87560 0.88180 0.77183 0.90311 0.91099 0.87835 0.89497 0.89362 0.88360 0.93227 0.88752 0.76502 0.75713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.90 13.22 21.65 0.29 -55.62 16 2 C 0.01 0.74 5.49 84.86 0.47 1.21 16 3 Si 1.00 42.92 29.55 68.60 2.03 44.95 16 4 H -0.25 -9.92 7.11 99.48 0.71 -9.22 16 5 H -0.28 -11.54 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 7 C -0.55 -30.96 9.50 67.95 0.65 -30.31 16 8 H 0.09 4.45 7.80 -2.91 -0.02 4.42 16 9 S -0.14 -8.03 20.57 -56.49 -1.16 -9.19 16 10 C -0.13 -5.34 6.16 71.24 0.44 -4.90 16 11 C 0.53 21.76 7.85 87.65 0.69 22.45 16 12 O -0.56 -27.26 15.86 -3.02 -0.05 -27.31 16 13 N -0.72 -22.58 5.30 -463.06 -2.46 -25.04 16 14 C 0.13 3.41 5.50 86.38 0.47 3.88 16 15 C 0.05 1.03 2.49 45.26 0.11 1.14 16 16 H 0.07 1.45 5.72 -2.38 -0.01 1.44 16 17 C -0.11 -1.33 6.50 31.80 0.21 -1.13 16 18 C -0.12 -1.17 6.93 31.47 0.22 -0.95 16 19 C 0.04 0.58 6.21 86.45 0.54 1.12 16 20 N -0.48 -9.82 5.05 -665.15 -3.36 -13.18 16 21 C 0.23 4.97 3.41 133.10 0.45 5.42 16 22 N -0.42 -9.38 9.63 -192.42 -1.85 -11.23 16 23 C 0.06 0.89 11.21 84.58 0.95 1.84 16 24 C 0.09 1.30 11.21 84.57 0.95 2.25 16 25 N -0.48 -9.68 10.50 -195.80 -2.06 -11.73 16 26 C 0.21 4.61 7.31 84.99 0.62 5.23 16 27 F -0.10 -2.11 13.51 44.97 0.61 -1.50 16 28 H 0.27 15.38 8.31 -92.70 -0.77 14.60 16 29 H 0.11 4.08 8.14 -2.40 -0.02 4.06 16 30 H 0.10 3.86 8.14 -2.39 -0.02 3.85 16 31 H 0.39 11.15 4.76 -92.71 -0.44 10.71 16 32 H 0.08 2.04 8.14 -2.38 -0.02 2.02 16 33 H 0.07 2.02 8.00 -2.39 -0.02 2.00 16 34 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.09 1.13 7.95 -2.39 -0.02 1.11 16 36 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 38 H 0.05 0.76 6.04 -2.38 -0.01 0.75 16 39 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.22 1.94 8.06 -2.92 -0.02 1.92 16 41 H 0.23 1.17 8.06 -2.91 -0.02 1.15 16 Total: -1.00 -81.19 355.98 -0.62 -81.81 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.64 Total: 20.79 kcal Atomic # 6 Polarization: 0.48 SS G_CDS: 6.76 Total: 7.24 kcal Atomic # 7 Polarization: -107.35 SS G_CDS: -9.44 Total: -116.79 kcal Atomic # 8 Polarization: -27.26 SS G_CDS: -0.05 Total: -27.31 kcal Atomic # 9 Polarization: -2.11 SS G_CDS: 0.61 Total: -1.50 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -8.03 SS G_CDS: -1.16 Total: -9.19 kcal Total: -81.19 -0.62 -81.81 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100787965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.797 kcal (2) G-P(sol) polarization free energy of solvation -81.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.810 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds