Wall clock time and date at job start Sat Apr 11 2020 05:56:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 120.00028 * 2 1 4 4 H 1.48497 * 109.46624 * 239.99594 * 3 2 1 5 5 H 1.48500 * 109.47088 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47242 * 119.99814 * 3 2 1 7 7 C 1.38798 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00288 * 180.02562 * 7 2 1 9 9 S 1.76210 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99405 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46793 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99900 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00193 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00128 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46886 * 180.02562 * 14 13 11 16 16 H 1.08995 * 110.64674 * 303.30346 * 15 14 13 17 17 C 1.54596 * 110.72299 * 66.45813 * 15 14 13 18 18 C 1.53991 * 105.14367 * 140.31360 * 17 15 14 19 19 N 1.47908 * 107.05646 * 1.22321 * 18 17 15 20 20 C 1.39119 * 110.99919 * 214.15823 * 19 18 17 21 21 N 1.32563 * 120.10522 * 239.84895 * 20 19 18 22 22 C 1.32308 * 119.94024 * 179.75806 * 21 20 19 23 23 C 1.38065 * 120.16660 * 0.52412 * 22 21 20 24 24 N 1.32354 * 120.21994 * 359.47232 * 23 22 21 25 25 C 1.32069 * 120.05447 * 0.26112 * 24 23 22 26 26 F 1.35094 * 120.08539 * 179.97438 * 25 24 23 27 27 C 1.48534 * 105.81762 * 334.66912 * 19 18 17 28 28 H 0.97001 * 119.99851 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47622 * 60.00582 * 10 9 7 30 30 H 1.08995 * 109.47559 * 299.99596 * 10 9 7 31 31 H 0.97001 * 119.99924 * 0.02562 * 13 11 10 32 32 H 1.08995 * 109.47059 * 60.00351 * 14 13 11 33 33 H 1.09001 * 109.47242 * 300.00446 * 14 13 11 34 34 H 1.09000 * 110.31448 * 21.39681 * 17 15 14 35 35 H 1.09006 * 110.38954 * 259.27047 * 17 15 14 36 36 H 1.09001 * 109.91709 * 241.87340 * 18 17 15 37 37 H 1.08998 * 110.08595 * 120.66436 * 18 17 15 38 38 H 1.08000 * 119.91804 * 180.25536 * 22 21 20 39 39 H 1.08002 * 119.89335 * 179.75852 * 23 22 21 40 40 H 1.09002 * 110.66324 * 157.64117 * 27 19 18 41 41 H 1.09000 * 110.67005 * 280.77239 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0007 14 6 2.3302 -7.7152 -0.0008 15 6 3.5023 -8.6986 -0.0009 16 1 4.1566 -8.5166 -0.8534 17 6 4.2926 -8.6079 1.3246 18 6 4.6546 -10.0624 1.6775 19 7 4.1235 -10.9169 0.5934 20 6 3.6980 -12.1450 1.0895 21 7 4.2469 -13.2674 0.6466 22 6 3.8431 -14.4333 1.1242 23 6 2.8436 -14.4848 2.0753 24 7 2.2911 -13.3682 2.5222 25 6 2.6912 -12.1994 2.0553 26 9 2.1273 -11.0593 2.5106 27 6 2.9907 -10.1611 0.0002 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7315 0.8905 30 1 3.1244 -3.7314 -0.8894 31 1 3.8008 -6.1836 -0.0004 32 1 1.7212 -7.8750 -0.8905 33 1 1.7219 -7.8754 0.8894 34 1 3.6709 -8.1724 2.1069 35 1 5.1973 -8.0155 1.1876 36 1 4.1961 -10.3393 2.6269 37 1 5.7370 -10.1738 1.7416 38 1 4.2935 -15.3473 0.7661 39 1 2.5147 -15.4392 2.4593 40 1 2.7926 -10.5001 -1.0166 41 1 2.0987 -10.2562 0.6193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100959836.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:43 Heat of formation + Delta-G solvation = -6.438695 kcal Electronic energy + Delta-G solvation = -25993.868089 eV Core-core repulsion = 21950.545755 eV Total energy + Delta-G solvation = -4043.322333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.85746 -41.78069 -39.84628 -38.84133 -35.55039 -34.63414 -32.76475 -32.42193 -30.61918 -29.73142 -28.98389 -25.73342 -25.33070 -25.14638 -24.22550 -22.18078 -20.76954 -20.28791 -19.04432 -18.70176 -18.04134 -17.64397 -17.00032 -16.64124 -16.24616 -15.90776 -15.37143 -15.13423 -15.04724 -14.80586 -14.79580 -14.27725 -14.05679 -13.88921 -13.49888 -13.43029 -13.13482 -12.76952 -12.50823 -12.49400 -12.35015 -11.90499 -11.81732 -11.64631 -11.26433 -11.04225 -11.03373 -10.97527 -10.76420 -10.39324 -9.82281 -9.73036 -9.41115 -9.06129 -9.04870 -8.89877 -8.23524 -6.49561 -6.20983 -3.91717 -0.15442 0.29947 2.52787 2.71177 2.77912 3.03879 3.09997 3.23894 3.27893 3.31245 3.41182 3.67569 3.86956 4.06570 4.21027 4.24060 4.27262 4.41070 4.47873 4.67475 4.70669 4.91336 4.99906 5.12027 5.14015 5.19799 5.24333 5.37022 5.44632 5.48229 5.56932 5.63842 5.76277 5.87288 5.90449 6.08279 6.12444 6.14213 6.52703 6.59253 7.00763 7.59707 7.69594 8.35513 8.61007 9.24126 10.86363 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.037252 B = 0.001775 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.458640 B =15769.952653 C =16046.142059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.737 5.737 14 C 0.130 3.870 15 C -0.097 4.097 16 H 0.098 0.902 17 C -0.126 4.126 18 C 0.041 3.959 19 N -0.467 5.467 20 C 0.246 3.754 21 N -0.394 5.394 22 C 0.052 3.948 23 C 0.080 3.920 24 N -0.462 5.462 25 C 0.234 3.766 26 F -0.095 7.095 27 C 0.041 3.959 28 H 0.269 0.731 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.398 0.602 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.053 0.947 37 H 0.091 0.909 38 H 0.185 0.815 39 H 0.184 0.816 40 H 0.096 0.904 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.811 -30.402 2.956 32.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.392 5.392 14 C 0.005 3.995 15 C -0.116 4.116 16 H 0.116 0.884 17 C -0.164 4.164 18 C -0.085 4.085 19 N -0.189 5.189 20 C 0.010 3.990 21 N -0.108 5.108 22 C -0.108 4.108 23 C -0.079 4.079 24 N -0.182 5.182 25 C 0.073 3.927 26 F -0.074 7.074 27 C -0.085 4.085 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.232 0.768 32 H 0.088 0.912 33 H 0.086 0.914 34 H 0.100 0.900 35 H 0.102 0.898 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.202 0.798 39 H 0.201 0.799 40 H 0.114 0.886 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 10.025 -30.686 2.571 32.384 hybrid contribution 1.680 1.491 0.782 2.378 sum 11.704 -29.195 3.353 31.632 Atomic orbital electron populations 1.70010 1.05949 1.27559 1.46764 1.24993 0.95031 0.99022 0.94537 0.86224 0.79233 0.81246 0.78789 1.19941 1.20815 1.19948 1.22829 0.94875 0.91671 1.59069 0.90964 1.85410 1.04937 0.96316 1.96724 1.23529 1.06567 0.95360 1.04933 1.20314 0.86510 0.86277 0.75132 1.90710 1.15390 1.85607 1.47433 1.45941 1.09969 1.05258 1.78057 1.21221 0.94897 0.80596 1.02742 1.22273 0.97161 0.93015 0.99197 0.88379 1.22521 1.01268 0.95117 0.97505 1.23046 1.01452 0.92213 0.91828 1.61673 1.29703 0.99249 1.28303 1.20756 0.92192 0.93388 0.92618 1.68226 1.23494 0.97041 1.22079 1.23896 0.95495 0.96610 0.94815 1.23694 0.93357 0.96421 0.94408 1.67731 1.27031 0.97890 1.25549 1.20206 0.94037 0.83429 0.95044 1.91670 1.83673 1.44527 1.87510 1.23456 0.91707 0.92278 1.01101 0.92132 0.89216 0.89197 0.76768 0.91185 0.91354 0.90031 0.89796 0.92893 0.89061 0.79778 0.79881 0.88585 0.91590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.20 13.22 55.49 0.73 -25.46 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 3 Si 0.92 21.39 29.55 -169.99 -5.02 16.36 16 4 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.54 -15.26 9.50 30.94 0.29 -14.96 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 C 0.53 9.73 7.85 -10.98 -0.09 9.65 16 12 O -0.52 -11.70 15.86 5.55 0.09 -11.61 16 13 N -0.74 -9.29 5.40 -60.29 -0.33 -9.62 16 14 C 0.13 1.42 5.01 -4.04 -0.02 1.40 16 15 C -0.10 -0.77 3.13 -88.76 -0.28 -1.05 16 16 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 17 C -0.13 -0.92 6.20 -25.38 -0.16 -1.08 16 18 C 0.04 0.32 6.21 -2.75 -0.02 0.30 16 19 N -0.47 -4.19 5.36 -168.99 -0.91 -5.10 16 20 C 0.25 2.30 5.87 -154.58 -0.91 1.39 16 21 N -0.39 -3.37 10.53 -12.17 -0.13 -3.50 16 22 C 0.05 0.26 11.21 -17.41 -0.20 0.06 16 23 C 0.08 0.40 11.21 -17.39 -0.19 0.21 16 24 N -0.46 -4.14 10.50 -13.24 -0.14 -4.28 16 25 C 0.23 2.28 7.36 -16.93 -0.12 2.15 16 26 F -0.09 -1.00 13.51 2.25 0.03 -0.97 16 27 C 0.04 0.35 5.70 -1.90 -0.01 0.34 16 28 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 29 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 31 H 0.40 3.82 8.33 -40.82 -0.34 3.48 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.08 0.66 7.80 -51.93 -0.41 0.26 16 35 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.05 0.44 6.03 -51.93 -0.31 0.13 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.19 0.17 8.06 -52.49 -0.42 -0.26 16 39 H 0.18 0.19 8.06 -52.49 -0.42 -0.23 16 40 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.60 5.63 -51.93 -0.29 0.31 16 LS Contribution 361.80 15.07 5.45 5.45 Total: -1.00 -36.96 361.80 -9.12 -46.08 By element: Atomic # 1 Polarization: 4.02 SS G_CDS: -5.12 Total: -1.10 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -1.57 Total: -2.41 kcal Atomic # 7 Polarization: -47.19 SS G_CDS: -0.77 Total: -47.95 kcal Atomic # 8 Polarization: -11.70 SS G_CDS: 0.09 Total: -11.61 kcal Atomic # 9 Polarization: -1.00 SS G_CDS: 0.03 Total: -0.97 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -36.96 -9.12 -46.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100959836.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.644 kcal (2) G-P(sol) polarization free energy of solvation -36.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds