Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31632 * 1 3 3 Si 1.86802 * 120.00028 * 2 1 4 4 H 1.48497 * 109.46624 * 239.99594 * 3 2 1 5 5 H 1.48500 * 109.47088 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47242 * 119.99814 * 3 2 1 7 7 C 1.38798 * 120.00020 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00288 * 180.02562 * 7 2 1 9 9 S 1.76210 * 119.99637 * 0.02562 * 7 2 1 10 10 C 1.81005 * 99.99405 * 179.97438 * 9 7 2 11 11 C 1.50704 * 109.46793 * 180.02562 * 10 9 7 12 12 O 1.21286 * 119.99900 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00193 * 179.97438 * 11 10 9 14 14 C 1.46505 * 120.00128 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46886 * 180.02562 * 14 13 11 16 16 H 1.08995 * 110.64674 * 303.30346 * 15 14 13 17 17 C 1.54596 * 110.72299 * 66.45813 * 15 14 13 18 18 C 1.53991 * 105.14367 * 140.31360 * 17 15 14 19 19 N 1.47908 * 107.05646 * 1.22321 * 18 17 15 20 20 C 1.39119 * 110.99919 * 214.15823 * 19 18 17 21 21 N 1.32563 * 120.10522 * 239.84895 * 20 19 18 22 22 C 1.32308 * 119.94024 * 179.75806 * 21 20 19 23 23 C 1.38065 * 120.16660 * 0.52412 * 22 21 20 24 24 N 1.32354 * 120.21994 * 359.47232 * 23 22 21 25 25 C 1.32069 * 120.05447 * 0.26112 * 24 23 22 26 26 F 1.35094 * 120.08539 * 179.97438 * 25 24 23 27 27 C 1.48534 * 105.81762 * 334.66912 * 19 18 17 28 28 H 0.97001 * 119.99851 * 359.97438 * 1 2 3 29 29 H 1.08995 * 109.47622 * 60.00582 * 10 9 7 30 30 H 1.08995 * 109.47559 * 299.99596 * 10 9 7 31 31 H 0.97001 * 119.99924 * 0.02562 * 13 11 10 32 32 H 1.08995 * 109.47059 * 60.00351 * 14 13 11 33 33 H 1.09001 * 109.47242 * 300.00446 * 14 13 11 34 34 H 1.09000 * 110.31448 * 21.39681 * 17 15 14 35 35 H 1.09006 * 110.38954 * 259.27047 * 17 15 14 36 36 H 1.09001 * 109.91709 * 241.87340 * 18 17 15 37 37 H 1.08998 * 110.08595 * 120.66436 * 18 17 15 38 38 H 1.08000 * 119.91804 * 180.25536 * 22 21 20 39 39 H 1.08002 * 119.89335 * 179.75852 * 23 22 21 40 40 H 1.09002 * 110.66324 * 157.64117 * 27 19 18 41 41 H 1.09000 * 110.67005 * 280.77239 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6962 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1041 1.6965 1.2126 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8914 0.0005 11 6 1.9873 -5.3027 -0.0001 12 8 0.7910 -5.5023 0.0000 13 7 2.8440 -6.3432 -0.0007 14 6 2.3302 -7.7152 -0.0008 15 6 3.5023 -8.6986 -0.0009 16 1 4.1566 -8.5166 -0.8534 17 6 4.2926 -8.6079 1.3246 18 6 4.6546 -10.0624 1.6775 19 7 4.1235 -10.9169 0.5934 20 6 3.6980 -12.1450 1.0895 21 7 4.2469 -13.2674 0.6466 22 6 3.8431 -14.4333 1.1242 23 6 2.8436 -14.4848 2.0753 24 7 2.2911 -13.3682 2.5222 25 6 2.6912 -12.1994 2.0553 26 9 2.1273 -11.0593 2.5106 27 6 2.9907 -10.1611 0.0002 28 1 -0.4850 0.8401 0.0004 29 1 3.1244 -3.7315 0.8905 30 1 3.1244 -3.7314 -0.8894 31 1 3.8008 -6.1836 -0.0004 32 1 1.7212 -7.8750 -0.8905 33 1 1.7219 -7.8754 0.8894 34 1 3.6709 -8.1724 2.1069 35 1 5.1973 -8.0155 1.1876 36 1 4.1961 -10.3393 2.6269 37 1 5.7370 -10.1738 1.7416 38 1 4.2935 -15.3473 0.7661 39 1 2.5147 -15.4392 2.4593 40 1 2.7926 -10.5001 -1.0166 41 1 2.0987 -10.2562 0.6193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100959836.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -35.287507 kcal Electronic energy + Delta-G solvation = -25995.119067 eV Core-core repulsion = 21950.545755 eV Total energy + Delta-G solvation = -4044.573312 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.54187 -42.32549 -40.83266 -39.92822 -36.46934 -35.37703 -34.57437 -33.61865 -31.60230 -30.31386 -30.19630 -27.69065 -26.40067 -25.71201 -24.89236 -22.84178 -21.66035 -21.49541 -19.83930 -19.60500 -19.30645 -18.50040 -17.77906 -17.60023 -17.49018 -16.87230 -16.79421 -16.42199 -16.09833 -15.75285 -15.67398 -15.40737 -14.87385 -14.79620 -14.63709 -14.48401 -14.33298 -14.04097 -13.53445 -13.36042 -13.15921 -13.11888 -12.91834 -12.85483 -12.63545 -12.43689 -12.30636 -12.06101 -11.73790 -11.62338 -11.11925 -10.99646 -10.92199 -10.26648 -10.24737 -10.12646 -9.66613 -8.65807 -8.33502 -6.11737 -0.67333 -0.23598 1.27641 1.44743 1.47606 1.57232 1.62568 1.97247 2.12432 2.27096 2.28788 2.34846 2.93181 3.00532 3.29545 3.36199 3.44410 3.56478 3.71158 3.87288 3.97824 4.04315 4.06582 4.24225 4.27847 4.32802 4.35078 4.50247 4.52580 4.53362 4.66682 4.79758 4.88338 5.01873 5.03301 5.12959 5.41410 5.42778 5.44229 5.55663 6.00259 6.20675 6.48774 6.51910 7.07627 7.25811 8.75429 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.037252 B = 0.001775 C = 0.001745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 751.458640 B =15769.952653 C =16046.142059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 0.999 3.001 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.262 1.262 7 C -0.546 4.546 8 H 0.084 0.916 9 S -0.155 6.155 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.708 5.708 14 C 0.132 3.868 15 C -0.082 4.082 16 H 0.115 0.885 17 C -0.123 4.123 18 C 0.042 3.958 19 N -0.470 5.470 20 C 0.232 3.768 21 N -0.418 5.418 22 C 0.068 3.932 23 C 0.090 3.910 24 N -0.490 5.490 25 C 0.208 3.792 26 F -0.111 7.111 27 C 0.042 3.958 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.112 0.888 31 H 0.418 0.582 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.042 0.958 37 H 0.101 0.899 38 H 0.230 0.770 39 H 0.227 0.773 40 H 0.100 0.900 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.870 -31.964 2.692 35.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.102 0.898 9 S 0.072 5.928 10 C -0.280 4.280 11 C 0.319 3.681 12 O -0.447 6.447 13 N -0.362 5.362 14 C 0.008 3.992 15 C -0.102 4.102 16 H 0.133 0.867 17 C -0.161 4.161 18 C -0.084 4.084 19 N -0.193 5.193 20 C -0.002 4.002 21 N -0.133 5.133 22 C -0.094 4.094 23 C -0.069 4.069 24 N -0.211 5.211 25 C 0.049 3.951 26 F -0.090 7.090 27 C -0.085 4.085 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.130 0.870 31 H 0.255 0.745 32 H 0.082 0.918 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.061 0.939 37 H 0.119 0.881 38 H 0.246 0.754 39 H 0.243 0.757 40 H 0.118 0.882 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.144 -32.249 2.309 34.901 hybrid contribution 0.775 1.655 0.879 2.028 sum 13.919 -30.594 3.188 33.762 Atomic orbital electron populations 1.70184 1.07998 1.28640 1.47997 1.26141 0.95965 1.03360 0.93762 0.85001 0.77788 0.75670 0.79517 1.18607 1.20490 1.18637 1.23182 0.95387 0.91955 1.58884 0.89776 1.85612 1.10751 0.99349 1.97066 1.23369 1.03473 0.94200 1.06958 1.20081 0.86193 0.86735 0.75078 1.90701 1.17578 1.86141 1.50232 1.45635 1.10368 1.04736 1.75491 1.21277 0.96109 0.79970 1.01829 1.22148 0.95992 0.91715 1.00325 0.86691 1.22525 1.01800 0.95157 0.96583 1.23062 1.01821 0.92253 0.91276 1.61720 1.29489 0.99475 1.28589 1.20744 0.92643 0.93778 0.93062 1.68274 1.24285 0.97810 1.22979 1.24691 0.94428 0.96872 0.93384 1.24497 0.92296 0.96742 0.93385 1.67758 1.28170 0.98609 1.26569 1.20283 0.95084 0.83482 0.96231 1.91617 1.84058 1.45456 1.87849 1.23416 0.91467 0.92543 1.01072 0.92033 0.87058 0.87009 0.74453 0.91822 0.92736 0.91071 0.87657 0.93943 0.88101 0.75382 0.75655 0.88191 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.28 13.22 21.65 0.29 -55.99 16 2 C 0.01 0.71 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.54 29.55 68.60 2.03 45.57 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 6 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 7 C -0.55 -31.14 9.50 67.95 0.65 -30.50 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.62 20.57 -56.49 -1.16 -9.78 16 10 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 11 C 0.53 19.35 7.85 87.66 0.69 20.04 16 12 O -0.57 -26.45 15.86 -3.05 -0.05 -26.50 16 13 N -0.71 -16.82 5.40 -463.05 -2.50 -19.32 16 14 C 0.13 2.84 5.01 86.38 0.43 3.27 16 15 C -0.08 -1.20 3.13 -9.59 -0.03 -1.23 16 16 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 17 C -0.12 -1.62 6.20 31.47 0.19 -1.42 16 18 C 0.04 0.63 6.21 86.44 0.54 1.17 16 19 N -0.47 -8.18 5.36 -688.56 -3.69 -11.88 16 20 C 0.23 4.24 5.87 133.09 0.78 5.02 16 21 N -0.42 -6.51 10.53 -192.42 -2.03 -8.54 16 22 C 0.07 0.47 11.21 84.58 0.95 1.42 16 23 C 0.09 0.69 11.21 84.57 0.95 1.63 16 24 N -0.49 -8.51 10.50 -195.79 -2.06 -10.56 16 25 C 0.21 4.14 7.36 84.99 0.63 4.77 16 26 F -0.11 -2.51 13.51 44.97 0.61 -1.90 16 27 C 0.04 0.70 5.70 86.65 0.49 1.19 16 28 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 30 H 0.11 3.87 8.14 -2.40 -0.02 3.85 16 31 H 0.42 6.80 8.33 -92.71 -0.77 6.03 16 32 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.05 1.36 8.07 -2.39 -0.02 1.34 16 34 H 0.07 1.11 7.80 -2.39 -0.02 1.09 16 35 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.04 0.73 6.03 -2.39 -0.01 0.71 16 37 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 38 H 0.23 -0.66 8.06 -2.91 -0.02 -0.68 16 39 H 0.23 -0.46 8.06 -2.91 -0.02 -0.48 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.05 1.03 5.63 -2.39 -0.01 1.02 16 Total: -1.00 -84.80 361.80 -1.09 -85.89 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.31 Total: 11.06 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: 7.17 Total: 1.96 kcal Atomic # 7 Polarization: -96.29 SS G_CDS: -9.99 Total: -106.28 kcal Atomic # 8 Polarization: -26.45 SS G_CDS: -0.05 Total: -26.50 kcal Atomic # 9 Polarization: -2.51 SS G_CDS: 0.61 Total: -1.90 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Atomic # 16 Polarization: -8.62 SS G_CDS: -1.16 Total: -9.78 kcal Total: -84.80 -1.09 -85.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100959836.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.603 kcal (2) G-P(sol) polarization free energy of solvation -84.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds