Wall clock time and date at job start Sat Apr 11 2020 05:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31634 * 1 3 3 Si 1.86796 * 119.99937 * 2 1 4 4 H 1.48500 * 109.47045 * 269.99806 * 3 2 1 5 5 H 1.48497 * 109.47430 * 29.99943 * 3 2 1 6 6 H 1.48501 * 109.47090 * 149.99868 * 3 2 1 7 7 C 1.38795 * 119.99673 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00403 * 0.02562 * 7 2 1 9 9 S 1.76206 * 119.99714 * 179.97438 * 7 2 1 10 10 C 1.81002 * 99.99936 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47118 * 180.02562 * 10 9 7 12 12 O 1.21289 * 120.00277 * 0.02562 * 11 10 9 13 13 N 1.34783 * 120.00227 * 180.02562 * 11 10 9 14 14 C 1.46498 * 120.00130 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47090 * 180.02562 * 14 13 11 16 16 N 1.46498 * 109.47481 * 180.02562 * 15 14 13 17 17 C 1.39152 * 120.00180 * 270.27793 * 16 15 14 18 18 C 1.39205 * 120.06216 * 189.04829 * 17 16 15 19 19 N 1.32015 * 119.93202 * 179.68390 * 18 17 16 20 20 C 1.32401 * 120.05098 * 0.58878 * 19 18 17 21 21 F 1.35101 * 119.93458 * 179.68854 * 20 19 18 22 22 C 1.38472 * 120.12502 * 359.70366 * 20 19 18 23 23 N 1.32212 * 120.06821 * 359.97438 * 22 20 19 24 24 C 1.46499 * 119.99797 * 89.99874 * 16 15 14 25 25 C 1.53004 * 117.50152 * 2.63976 * 24 16 15 26 26 C 1.53003 * 117.50150 * 293.98036 * 24 16 15 27 27 H 0.96999 * 119.99786 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46833 * 60.00135 * 10 9 7 29 29 H 1.09003 * 109.47387 * 300.00179 * 10 9 7 30 30 H 0.97002 * 119.99416 * 359.97438 * 13 11 10 31 31 H 1.08995 * 109.47167 * 59.99969 * 14 13 11 32 32 H 1.09003 * 109.47136 * 300.00152 * 14 13 11 33 33 H 1.09000 * 109.47634 * 59.99757 * 15 14 13 34 34 H 1.09003 * 109.47202 * 300.00046 * 15 14 13 35 35 H 1.08000 * 120.03568 * 359.97212 * 18 17 16 36 36 H 1.08002 * 119.96435 * 179.97438 * 22 20 19 37 37 H 1.09000 * 115.54907 * 148.31635 * 24 16 15 38 38 H 1.08997 * 117.49717 * 0.02562 * 25 24 16 39 39 H 1.09004 * 117.49844 * 145.02198 * 25 24 16 40 40 H 1.08997 * 117.50241 * 214.98291 * 26 24 16 41 41 H 1.09004 * 117.49455 * 359.97438 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7000 6 1 3.5479 1.4402 0.7001 7 6 2.0102 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 -0.0001 10 6 4.0866 -2.9846 0.0001 11 6 5.5730 -3.2326 0.0002 12 8 6.3441 -2.2963 0.0006 13 7 6.0457 -4.4948 -0.0001 14 6 7.4907 -4.7359 -0.0005 15 6 7.7563 -6.2426 -0.0015 16 7 9.2013 -6.4837 -0.0013 17 6 9.8888 -6.5917 -1.2063 18 6 11.2179 -7.0056 -1.2161 19 7 11.8659 -7.1131 -2.3613 20 6 11.2561 -6.8166 -3.4985 21 9 11.9234 -6.9214 -4.6685 22 6 9.9359 -6.3988 -3.4908 23 7 9.2805 -6.2955 -2.3473 24 6 9.9235 -6.6051 1.2675 25 6 9.1033 -6.5325 2.5571 26 6 10.0047 -5.3621 2.1560 27 1 -0.4850 0.8401 0.0004 28 1 3.6433 -3.4318 -0.8896 29 1 3.6440 -3.4315 0.8904 30 1 5.4290 -5.2436 0.0000 31 1 7.9338 -4.2890 0.8893 32 1 7.9334 -4.2887 -0.8906 33 1 7.3132 -6.6892 -0.8915 34 1 7.3136 -6.6902 0.8884 35 1 11.7171 -7.2429 -0.2883 36 1 9.4412 -6.1572 -4.4199 37 1 10.7852 -7.2726 1.2560 38 1 8.0263 -6.3948 2.4614 39 1 9.4255 -7.1519 3.3941 40 1 10.9195 -5.2121 2.7292 41 1 9.5211 -4.4539 1.7962 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101283513.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:01 Heat of formation + Delta-G solvation = 20.106193 kcal Electronic energy + Delta-G solvation = -25880.811082 eV Core-core repulsion = 21838.639821 eV Total energy + Delta-G solvation = -4042.171261 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -49.27419 -41.56323 -39.57032 -38.81599 -35.62332 -34.75427 -33.97086 -32.45630 -31.32194 -29.69670 -28.00998 -25.68179 -25.49087 -24.37895 -23.46129 -22.64939 -21.21056 -20.47601 -18.73366 -18.63615 -18.22021 -17.89337 -16.66609 -16.52520 -16.21338 -15.89065 -15.64849 -15.33250 -15.00659 -14.91123 -14.75311 -14.56872 -14.03586 -13.89478 -13.76527 -13.46592 -13.23455 -12.81136 -12.62605 -12.50783 -12.10515 -12.03511 -11.81602 -11.59154 -11.31263 -11.28344 -11.07227 -11.02241 -10.63806 -10.26753 -9.88239 -9.72076 -9.57728 -9.06672 -9.00292 -8.52348 -8.16603 -6.94038 -6.30669 -4.02616 0.30306 0.62534 1.92954 2.75502 2.93010 3.04234 3.08014 3.24868 3.30306 3.33384 3.49077 3.61008 3.72644 3.83241 4.16491 4.23760 4.30309 4.31625 4.34889 4.56955 4.60317 4.64877 4.74337 4.92853 4.94301 5.07818 5.08485 5.21794 5.25161 5.36631 5.52863 5.66224 5.74142 5.74900 5.84791 5.97839 6.14375 6.38326 6.51758 6.83952 7.24385 7.52426 7.92427 8.39765 8.43528 9.15521 10.78525 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.002191 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.370158 B =12778.103826 C =13822.859187 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.095 3.905 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.123 4.123 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.735 5.735 14 C 0.105 3.895 15 C 0.113 3.887 16 N -0.563 5.563 17 C 0.352 3.648 18 C 0.036 3.964 19 N -0.432 5.432 20 C 0.186 3.814 21 F -0.109 7.109 22 C 0.100 3.900 23 N -0.470 5.470 24 C 0.074 3.926 25 C -0.176 4.176 26 C -0.193 4.193 27 H 0.271 0.729 28 H 0.098 0.902 29 H 0.098 0.902 30 H 0.399 0.601 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.175 0.825 36 H 0.183 0.817 37 H 0.133 0.867 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.012 -19.906 1.243 29.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.669 4.669 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.274 4.274 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.390 5.390 14 C -0.021 4.021 15 C -0.011 4.011 16 N -0.274 5.274 17 C 0.115 3.885 18 C -0.133 4.133 19 N -0.150 5.150 20 C 0.029 3.971 21 F -0.088 7.088 22 C -0.063 4.063 23 N -0.191 5.191 24 C -0.030 4.030 25 C -0.214 4.214 26 C -0.232 4.232 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.116 0.884 30 H 0.233 0.767 31 H 0.085 0.915 32 H 0.090 0.910 33 H 0.112 0.888 34 H 0.107 0.893 35 H 0.192 0.808 36 H 0.200 0.800 37 H 0.150 0.850 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 23.059 -18.239 1.303 29.429 hybrid contribution -0.963 -0.627 -0.299 1.188 sum 22.096 -18.866 1.004 29.072 Atomic orbital electron populations 1.69939 1.05903 1.27778 1.48039 1.24716 0.94461 0.98978 0.93184 0.86733 0.81874 0.83277 0.79957 1.19197 1.19933 1.15943 1.22309 0.88225 0.97538 1.58808 0.89361 1.84814 1.09327 0.99999 1.97429 1.23271 0.93820 1.04457 1.05860 1.20284 0.90624 0.82128 0.75168 1.90710 1.58796 1.42173 1.47545 1.45800 1.06991 1.08223 1.77989 1.21746 0.81930 0.95464 1.02946 1.21679 0.79618 0.95561 1.04220 1.45674 1.06609 1.74374 1.00750 1.19269 0.90055 0.92181 0.87003 1.22918 0.91356 1.02936 0.96129 1.67598 1.37727 1.11932 0.97787 1.18807 0.90074 1.05805 0.82374 1.91630 1.81002 1.93963 1.42220 1.23364 0.90323 0.95132 0.97481 1.68080 1.36862 1.17244 0.96949 1.21752 0.98938 1.02178 0.80148 1.23410 0.99261 1.02213 0.96505 1.23665 1.02594 0.93926 1.02976 0.91929 0.88410 0.88419 0.76670 0.91536 0.90981 0.88819 0.89340 0.80793 0.80031 0.84970 0.87667 0.87244 0.87572 0.87721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.40 13.97 55.49 0.78 -25.63 16 2 C 0.10 2.77 5.50 -17.43 -0.10 2.68 16 3 Si 0.86 21.70 27.74 -169.99 -4.71 16.99 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -14.88 10.04 30.94 0.31 -14.57 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.12 -2.32 6.16 36.00 0.22 -2.09 16 11 C 0.53 9.16 7.85 -10.99 -0.09 9.07 16 12 O -0.52 -11.08 15.86 5.55 0.09 -10.99 16 13 N -0.73 -8.66 5.56 -60.30 -0.33 -8.99 16 14 C 0.10 1.11 5.96 -4.05 -0.02 1.09 16 15 C 0.11 0.82 5.02 -4.05 -0.02 0.80 16 16 N -0.56 -3.95 2.92 -166.11 -0.49 -4.44 16 17 C 0.35 3.01 7.33 -154.63 -1.13 1.88 16 18 C 0.04 0.28 10.50 -17.11 -0.18 0.10 16 19 N -0.43 -4.35 10.50 -13.24 -0.14 -4.49 16 20 C 0.19 1.81 8.43 -17.22 -0.15 1.67 16 21 F -0.11 -1.09 17.29 2.25 0.04 -1.05 16 22 C 0.10 0.86 11.20 -17.30 -0.19 0.66 16 23 N -0.47 -4.56 9.41 -12.17 -0.11 -4.67 16 24 C 0.07 0.36 5.96 -67.93 -0.41 -0.04 16 25 C -0.18 -0.78 9.74 -26.69 -0.26 -1.04 16 26 C -0.19 -1.07 10.20 -26.69 -0.27 -1.34 16 27 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 28 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 29 H 0.10 1.68 8.14 -51.91 -0.42 1.26 16 30 H 0.40 3.41 8.47 -40.82 -0.35 3.07 16 31 H 0.07 0.76 5.90 -51.93 -0.31 0.45 16 32 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 33 H 0.09 0.72 7.56 -51.93 -0.39 0.32 16 34 H 0.09 0.48 6.00 -51.93 -0.31 0.17 16 35 H 0.18 0.84 6.13 -52.49 -0.32 0.52 16 36 H 0.18 1.07 8.06 -52.49 -0.42 0.64 16 37 H 0.13 0.36 6.42 -51.93 -0.33 0.03 16 38 H 0.11 0.53 6.11 -51.93 -0.32 0.21 16 39 H 0.11 0.32 8.14 -51.93 -0.42 -0.10 16 40 H 0.11 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.83 6.13 -51.93 -0.32 0.51 16 LS Contribution 364.47 15.07 5.49 5.49 Total: -1.00 -35.88 364.47 -8.43 -44.32 By element: Atomic # 1 Polarization: 4.94 SS G_CDS: -4.76 Total: 0.18 kcal Atomic # 6 Polarization: 1.14 SS G_CDS: -2.28 Total: -1.15 kcal Atomic # 7 Polarization: -47.92 SS G_CDS: -0.30 Total: -48.22 kcal Atomic # 8 Polarization: -11.08 SS G_CDS: 0.09 Total: -10.99 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -4.71 Total: 16.99 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -35.88 -8.43 -44.32 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101283513.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.422 kcal (2) G-P(sol) polarization free energy of solvation -35.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds