Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86798 * 120.00271 * 2 1 4 4 H 1.48498 * 109.47221 * 239.99742 * 3 2 1 5 5 H 1.48503 * 109.46953 * 359.97438 * 3 2 1 6 6 H 1.48506 * 109.47096 * 119.99612 * 3 2 1 7 7 C 1.38800 * 119.99848 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99733 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00133 * 0.02562 * 7 2 1 10 10 C 1.81005 * 100.00299 * 179.97438 * 9 7 2 11 11 C 1.50692 * 109.47269 * 179.97438 * 10 9 7 12 12 O 1.21286 * 120.00063 * 359.97438 * 11 10 9 13 13 N 1.34772 * 120.00185 * 179.97438 * 11 10 9 14 14 C 1.46507 * 120.00443 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.47170 * 180.02562 * 14 13 11 16 16 N 1.46497 * 109.46794 * 180.02562 * 15 14 13 17 17 C 1.38569 * 120.00412 * 90.00083 * 16 15 14 18 18 C 1.39469 * 120.51110 * 351.20987 * 17 16 15 19 19 C 1.38468 * 118.30830 * 180.02562 * 18 17 16 20 20 F 1.35103 * 120.42562 * 180.02562 * 19 18 17 21 21 N 1.32788 * 119.14146 * 0.02562 * 19 18 17 22 22 C 1.31762 * 120.96278 * 359.97438 * 21 19 18 23 23 N 1.31758 * 121.85982 * 0.27973 * 22 21 19 24 24 C 1.46508 * 119.99885 * 269.99860 * 16 15 14 25 25 C 1.52997 * 117.49998 * 10.82567 * 24 16 15 26 26 C 1.53003 * 117.49836 * 302.16706 * 24 16 15 27 27 H 0.97001 * 119.99289 * 0.02562 * 1 2 3 28 28 H 1.08991 * 109.46823 * 59.99619 * 10 9 7 29 29 H 1.09006 * 109.46575 * 299.99777 * 10 9 7 30 30 H 0.96997 * 120.00105 * 359.97438 * 13 11 10 31 31 H 1.08992 * 109.46830 * 59.99631 * 14 13 11 32 32 H 1.08999 * 109.46532 * 300.00397 * 14 13 11 33 33 H 1.09004 * 109.47236 * 59.99817 * 15 14 13 34 34 H 1.08998 * 109.46967 * 299.99940 * 15 14 13 35 35 H 1.07995 * 120.84143 * 0.02562 * 18 17 16 36 36 H 1.08001 * 119.06710 * 180.02562 * 22 21 19 37 37 H 1.08996 * 115.55137 * 156.50045 * 24 16 15 38 38 H 1.09002 * 117.49563 * 0.02562 * 25 24 16 39 39 H 1.08995 * 117.50120 * 145.01763 * 25 24 16 40 40 H 1.09000 * 117.49740 * 214.98127 * 26 24 16 41 41 H 1.09002 * 117.49803 * 0.02562 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1042 1.6963 -1.2124 5 1 1.2854 2.7464 -0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7279 0.0005 10 6 2.5158 -3.8915 0.0005 11 6 1.9873 -5.3027 0.0012 12 8 0.7910 -5.5023 0.0021 13 7 2.8440 -6.3431 0.0008 14 6 2.3302 -7.7152 0.0008 15 6 3.5023 -8.6986 0.0009 16 7 2.9885 -10.0705 0.0004 17 6 2.7459 -10.7191 -1.1999 18 6 2.8108 -10.0230 -2.4067 19 6 2.5597 -10.7160 -3.5788 20 9 2.6115 -10.0840 -4.7718 21 7 2.2673 -12.0097 -3.5152 22 6 2.2143 -12.6365 -2.3574 23 7 2.4416 -12.0142 -1.2185 24 6 2.7312 -10.7569 1.2689 25 6 2.7730 -9.9176 2.5474 26 6 3.9023 -10.9049 2.2423 27 1 -0.4849 0.8401 -0.0004 28 1 3.1244 -3.7314 0.8904 29 1 3.1244 -3.7314 -0.8895 30 1 3.8007 -6.1836 -0.0003 31 1 1.7213 -7.8751 -0.8889 32 1 1.7219 -7.8752 0.8910 33 1 4.1109 -8.5385 0.8910 34 1 4.1109 -8.5386 -0.8890 35 1 3.0509 -8.9702 -2.4263 36 1 1.9740 -13.6894 -2.3413 37 1 2.0076 -11.5708 1.2247 38 1 2.9916 -8.8546 2.4447 39 1 2.0772 -10.1795 3.3444 40 1 3.9489 -11.8160 2.8387 41 1 4.8641 -10.4912 1.9391 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101283645.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = 14.154126 kcal Electronic energy + Delta-G solvation = -25900.189518 eV Core-core repulsion = 21857.760157 eV Total energy + Delta-G solvation = -4042.429362 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 2.41 seconds Orbital eigenvalues (eV) -49.45434 -41.39078 -39.54973 -38.79012 -35.69050 -34.69051 -33.15071 -32.46412 -31.42417 -30.14856 -28.22510 -25.54607 -24.96425 -24.29940 -23.40659 -22.80511 -21.09838 -20.48857 -18.88178 -18.65088 -17.88665 -16.82448 -16.68178 -16.55813 -16.29420 -16.06362 -15.85292 -15.31208 -15.03533 -14.83812 -14.78547 -14.60017 -14.17690 -13.95011 -13.80859 -13.47137 -13.05750 -13.00001 -12.58643 -12.32341 -11.95881 -11.84083 -11.65185 -11.16873 -11.08499 -11.06602 -10.92423 -10.91409 -10.80581 -10.16942 -9.87066 -9.84670 -9.55511 -9.11845 -9.05673 -8.47828 -8.29103 -6.54790 -6.25013 -3.96332 0.46888 0.75238 1.92613 2.94689 2.98235 3.04795 3.20964 3.24243 3.25299 3.27975 3.46445 3.64589 3.68552 4.04517 4.16890 4.26303 4.34512 4.36658 4.47845 4.54077 4.64173 4.74115 4.82913 5.06910 5.10156 5.13684 5.20876 5.31322 5.43130 5.45936 5.55076 5.63371 5.72030 5.81429 5.87938 6.03693 6.06503 6.40207 6.62003 6.69257 7.52306 7.55988 7.67346 8.31319 8.48173 9.20153 10.82350 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.002197 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.481550 B =12740.139938 C =13993.810714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.153 4.153 11 C 0.533 3.467 12 O -0.513 6.513 13 N -0.739 5.739 14 C 0.101 3.899 15 C 0.106 3.894 16 N -0.558 5.558 17 C 0.467 3.533 18 C -0.315 4.315 19 C 0.387 3.613 20 F -0.099 7.099 21 N -0.592 5.592 22 C 0.374 3.626 23 N -0.576 5.576 24 C 0.092 3.908 25 C -0.187 4.187 26 C -0.191 4.191 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.399 0.601 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.095 0.905 34 H 0.090 0.910 35 H 0.156 0.844 36 H 0.208 0.792 37 H 0.139 0.861 38 H 0.103 0.897 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.829 -25.642 1.136 27.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.319 3.681 12 O -0.386 6.386 13 N -0.395 5.395 14 C -0.025 4.025 15 C -0.018 4.018 16 N -0.267 5.267 17 C 0.225 3.775 18 C -0.344 4.344 19 C 0.229 3.771 20 F -0.078 7.078 21 N -0.317 5.317 22 C 0.085 3.915 23 N -0.301 5.301 24 C -0.012 4.012 25 C -0.225 4.225 26 C -0.230 4.230 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.233 0.767 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.108 0.892 35 H 0.174 0.826 36 H 0.224 0.776 37 H 0.157 0.843 38 H 0.121 0.879 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 8.459 -26.640 1.253 27.979 hybrid contribution 2.659 2.393 -0.300 3.590 sum 11.118 -24.247 0.953 26.691 Atomic orbital electron populations 1.70006 1.05965 1.27629 1.46641 1.24998 0.95039 0.99057 0.94484 0.86218 0.79238 0.81203 0.78804 1.19920 1.20790 1.19926 1.22814 0.94857 0.91608 1.59232 0.90948 1.85433 1.04766 0.96349 1.96738 1.23526 1.06706 0.95123 1.05017 1.20340 0.86472 0.86211 0.75033 1.90725 1.15358 1.85504 1.47027 1.45861 1.10048 1.05008 1.78614 1.21709 0.96203 0.80974 1.03616 1.21783 0.96043 0.79340 1.04626 1.45727 1.66607 1.12483 1.01859 1.18124 0.86187 0.87875 0.85329 1.21899 1.17297 1.03831 0.91354 1.17977 0.90826 0.87519 0.80791 1.91685 1.92456 1.79950 1.43721 1.67860 1.22950 1.08697 1.32184 1.24566 0.87039 0.99816 0.80063 1.68021 1.22246 1.07980 1.31847 1.21701 1.01395 0.99093 0.79006 1.23519 1.02342 0.98294 0.98366 1.23445 0.94450 1.01838 1.03232 0.92079 0.89122 0.89100 0.76747 0.91127 0.90722 0.88653 0.89170 0.82632 0.77592 0.84330 0.87885 0.87412 0.87820 0.88628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.91 13.22 55.49 0.73 -25.18 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.11 29.55 -169.99 -5.02 16.08 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 8 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.15 -2.92 6.16 36.00 0.22 -2.70 16 11 C 0.53 9.28 7.85 -10.99 -0.09 9.19 16 12 O -0.51 -11.24 15.86 5.55 0.09 -11.16 16 13 N -0.74 -8.38 5.56 -60.30 -0.33 -8.72 16 14 C 0.10 1.01 5.76 -4.04 -0.02 0.99 16 15 C 0.11 0.70 4.39 -4.04 -0.02 0.68 16 16 N -0.56 -4.32 2.92 -166.10 -0.48 -4.80 16 17 C 0.47 4.33 7.37 -154.76 -1.14 3.19 16 18 C -0.31 -2.98 9.00 -39.04 -0.35 -3.33 16 19 C 0.39 4.17 8.50 -17.05 -0.14 4.02 16 20 F -0.10 -1.12 17.30 2.25 0.04 -1.09 16 21 N -0.59 -6.24 10.45 -14.98 -0.16 -6.40 16 22 C 0.37 3.10 12.28 -92.21 -1.13 1.97 16 23 N -0.58 -5.27 9.45 -13.84 -0.13 -5.40 16 24 C 0.09 0.64 6.24 -67.93 -0.42 0.22 16 25 C -0.19 -1.14 9.54 -26.70 -0.25 -1.40 16 26 C -0.19 -1.06 10.07 -26.69 -0.27 -1.33 16 27 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 28 H 0.09 1.57 8.14 -51.92 -0.42 1.15 16 29 H 0.09 1.59 8.14 -51.91 -0.42 1.16 16 30 H 0.40 3.14 8.47 -40.82 -0.35 2.80 16 31 H 0.07 0.84 7.64 -51.93 -0.40 0.44 16 32 H 0.07 0.85 7.44 -51.93 -0.39 0.46 16 33 H 0.10 0.48 6.29 -51.93 -0.33 0.16 16 34 H 0.09 0.50 6.63 -51.93 -0.34 0.15 16 35 H 0.16 1.29 6.16 -52.49 -0.32 0.97 16 36 H 0.21 0.90 8.06 -52.49 -0.42 0.48 16 37 H 0.14 1.01 7.71 -51.93 -0.40 0.61 16 38 H 0.10 0.67 5.93 -51.93 -0.31 0.36 16 39 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.10 0.53 7.99 -51.93 -0.42 0.11 16 LS Contribution 369.36 15.07 5.57 5.57 Total: -1.00 -35.58 369.36 -10.24 -45.82 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.90 Total: 0.30 kcal Atomic # 6 Polarization: 2.18 SS G_CDS: -3.42 Total: -1.24 kcal Atomic # 7 Polarization: -50.13 SS G_CDS: -0.37 Total: -50.50 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 9 Polarization: -1.12 SS G_CDS: 0.04 Total: -1.09 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.58 -10.24 -45.82 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101283645.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.976 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.41 seconds