Wall clock time and date at job start Sat Apr 11 2020 05:57:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48499 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46961 * 299.99900 * 3 2 1 6 6 H 1.48498 * 109.47108 * 59.99634 * 3 2 1 7 7 C 1.38804 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99896 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99765 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99589 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.46760 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00382 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99754 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99976 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47287 * 179.97438 * 14 13 11 16 16 N 1.46895 * 109.47007 * 179.97438 * 15 14 13 17 17 C 1.39122 * 110.99914 * 190.00076 * 16 15 14 18 18 N 1.32568 * 120.11139 * 236.05021 * 17 16 15 19 19 C 1.32307 * 119.94201 * 179.97438 * 18 17 16 20 20 C 1.38062 * 120.16738 * 359.97438 * 19 18 17 21 21 N 1.32344 * 120.21892 * 0.27677 * 20 19 18 22 22 C 1.32074 * 120.05740 * 359.44585 * 21 20 19 23 23 F 1.35104 * 120.08274 * 180.26996 * 22 21 20 24 24 C 1.46904 * 111.00033 * 66.05017 * 16 15 14 25 25 C 1.52998 * 117.50017 * 248.61884 * 24 16 15 26 26 C 1.52996 * 117.49943 * 179.97438 * 24 16 15 27 27 H 0.97003 * 119.99712 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47399 * 59.99824 * 10 9 7 29 29 H 1.09005 * 109.46569 * 299.99627 * 10 9 7 30 30 H 0.96995 * 119.99879 * 359.97438 * 13 11 10 31 31 H 1.09007 * 109.47124 * 59.99477 * 14 13 11 32 32 H 1.09002 * 109.47237 * 299.99967 * 14 13 11 33 33 H 1.09002 * 109.46623 * 59.99860 * 15 14 13 34 34 H 1.09000 * 109.46817 * 300.00334 * 15 14 13 35 35 H 1.08000 * 119.91534 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.88548 * 179.97438 * 20 19 18 37 37 H 1.09003 * 115.54868 * 34.33094 * 24 16 15 38 38 H 1.08998 * 117.49701 * 359.97438 * 25 24 16 39 39 H 1.09000 * 117.49796 * 145.02050 * 25 24 16 40 40 H 1.08998 * 117.49848 * 214.97672 * 26 24 16 41 41 H 1.09003 * 117.49758 * 0.02562 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7910 -5.5023 0.0009 13 7 2.8441 -6.3431 0.0033 14 6 2.3303 -7.7151 0.0034 15 6 3.5023 -8.6986 0.0046 16 7 2.9871 -10.0743 0.0054 17 6 4.0099 -10.9896 0.2321 18 7 4.2327 -11.9665 -0.6360 19 6 5.2067 -12.8349 -0.4173 20 6 5.9925 -12.7261 0.7126 21 7 5.7726 -11.7564 1.5860 22 6 4.8063 -10.8815 1.3738 23 9 4.5849 -9.8881 2.2623 24 6 2.2816 -10.3729 -1.2480 25 6 0.7659 -10.5688 -1.1763 26 6 1.6832 -11.7722 -1.4058 27 1 -0.4850 0.8401 -0.0004 28 1 3.1237 -3.7310 0.8924 29 1 3.1250 -3.7318 -0.8876 30 1 3.8008 -6.1835 0.0043 31 1 1.7226 -7.8757 -0.8872 32 1 1.7206 -7.8747 0.8928 33 1 4.1102 -8.5382 0.8950 34 1 4.1115 -8.5389 -0.8849 35 1 5.3875 -13.6308 -1.1246 36 1 6.7860 -13.4377 0.8868 37 1 2.6860 -9.8952 -2.1404 38 1 0.2923 -10.4765 -0.1989 39 1 0.1728 -10.2197 -2.0215 40 1 1.6932 -12.2145 -2.4019 41 1 1.8126 -12.4710 -0.5793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101299619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:25 Heat of formation + Delta-G solvation = 24.280108 kcal Electronic energy + Delta-G solvation = -26094.707103 eV Core-core repulsion = 22052.716837 eV Total energy + Delta-G solvation = -4041.990266 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -49.56670 -41.73836 -39.47525 -38.76860 -35.54307 -34.89078 -33.95598 -32.42746 -31.26243 -29.72969 -27.66799 -25.52517 -25.47965 -24.32402 -23.01713 -22.53384 -21.20350 -20.44515 -18.78121 -18.51005 -17.88807 -17.67955 -16.90876 -16.57026 -16.08469 -15.99686 -15.79900 -15.29384 -14.98649 -14.80373 -14.63599 -14.47125 -14.02765 -13.74238 -13.69096 -13.41822 -13.11080 -12.61948 -12.54996 -12.27505 -12.05880 -11.87321 -11.71611 -11.56331 -11.07048 -11.01944 -10.89884 -10.76046 -10.60978 -10.25972 -9.80942 -9.78211 -9.45148 -9.07924 -8.93187 -8.76359 -8.23333 -6.49964 -6.21794 -3.92225 0.06581 0.41480 2.39210 2.78513 3.00128 3.08333 3.14299 3.21700 3.29198 3.34679 3.52933 3.56687 3.63046 3.79836 4.20229 4.31775 4.42329 4.52956 4.56149 4.64629 4.65243 4.84894 4.91569 4.99707 5.13474 5.15923 5.21410 5.44084 5.48726 5.60886 5.64627 5.71148 5.86796 5.88981 5.91812 6.09707 6.13567 6.32865 6.54138 6.60185 7.05989 7.59913 7.64896 8.35502 8.58377 9.23700 10.85671 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022015 B = 0.002029 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.530909 B =13799.519011 C =14667.304519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.534 3.466 12 O -0.514 6.514 13 N -0.740 5.740 14 C 0.130 3.870 15 C 0.039 3.961 16 N -0.436 5.436 17 C 0.261 3.739 18 N -0.439 5.439 19 C 0.068 3.932 20 C 0.049 3.951 21 N -0.447 5.447 22 C 0.245 3.755 23 F -0.093 7.093 24 C 0.005 3.995 25 C -0.163 4.163 26 C -0.137 4.137 27 H 0.268 0.732 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.398 0.602 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.101 0.899 34 H 0.059 0.941 35 H 0.180 0.820 36 H 0.180 0.820 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.102 0.898 40 H 0.099 0.901 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.541 -29.175 -2.543 31.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.137 4.137 3 Si 0.746 3.254 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.320 3.680 12 O -0.387 6.387 13 N -0.395 5.395 14 C 0.005 3.995 15 C -0.087 4.087 16 N -0.152 5.152 17 C 0.024 3.976 18 N -0.158 5.158 19 C -0.092 4.092 20 C -0.110 4.110 21 N -0.167 5.167 22 C 0.084 3.916 23 F -0.072 7.072 24 C -0.102 4.102 25 C -0.201 4.201 26 C -0.175 4.175 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.231 0.769 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.119 0.881 34 H 0.078 0.922 35 H 0.197 0.803 36 H 0.197 0.803 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 9.948 -29.338 -2.139 31.053 hybrid contribution 2.986 1.486 -0.227 3.343 sum 12.934 -27.853 -2.366 30.800 Atomic orbital electron populations 1.70031 1.05942 1.27343 1.46940 1.25003 0.95042 0.99057 0.94563 0.86109 0.79570 0.81868 0.77897 1.19630 1.20575 1.20563 1.22906 0.94939 0.91622 1.58821 0.90867 1.85413 1.04876 0.96336 1.96714 1.23529 1.06624 0.95221 1.04995 1.20286 0.86460 0.86132 0.75108 1.90712 1.15289 1.85517 1.47213 1.45880 1.10029 1.05218 1.78390 1.21056 0.94729 0.79939 1.03742 1.22634 0.97948 0.84491 1.03650 1.58680 1.20327 1.01991 1.34223 1.20620 0.90796 0.95083 0.91101 1.68671 1.17205 1.03461 1.26506 1.23746 0.90677 0.97420 0.97391 1.23465 1.00748 0.95827 0.90949 1.67748 1.15584 1.02592 1.30744 1.18577 0.95272 0.89609 0.88189 1.91636 1.93001 1.56020 1.66576 1.22327 0.95328 1.02945 0.89629 1.23286 0.91106 1.01598 1.04098 1.22869 1.01430 0.90179 1.03005 0.92236 0.89108 0.89200 0.76892 0.90863 0.90374 0.88137 0.92241 0.80296 0.80299 0.87603 0.87910 0.87924 0.88273 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.18 13.22 55.49 0.73 -25.45 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.43 29.55 -169.99 -5.02 16.41 16 4 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 7 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.98 7.80 -52.49 -0.41 1.57 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.06 6.16 36.00 0.22 -2.84 16 11 C 0.53 9.88 7.85 -10.99 -0.09 9.79 16 12 O -0.51 -11.62 15.86 5.56 0.09 -11.53 16 13 N -0.74 -9.70 5.56 -60.29 -0.33 -10.03 16 14 C 0.13 1.53 5.67 -4.04 -0.02 1.51 16 15 C 0.04 0.36 4.78 -3.83 -0.02 0.34 16 16 N -0.44 -4.15 4.64 -165.40 -0.77 -4.91 16 17 C 0.26 2.45 6.14 -154.58 -0.95 1.50 16 18 N -0.44 -3.46 7.50 -12.17 -0.09 -3.55 16 19 C 0.07 0.34 11.21 -17.41 -0.20 0.15 16 20 C 0.05 0.27 11.21 -17.40 -0.19 0.08 16 21 N -0.45 -4.13 10.50 -13.24 -0.14 -4.27 16 22 C 0.25 2.48 8.08 -16.93 -0.14 2.34 16 23 F -0.09 -1.04 14.83 2.25 0.03 -1.00 16 24 C 0.00 0.04 3.73 -67.71 -0.25 -0.21 16 25 C -0.16 -1.37 10.40 -26.71 -0.28 -1.65 16 26 C -0.14 -1.05 8.66 -26.71 -0.23 -1.28 16 27 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 28 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 29 H 0.09 1.65 8.14 -51.91 -0.42 1.22 16 30 H 0.40 3.98 8.47 -40.82 -0.35 3.63 16 31 H 0.07 0.91 7.33 -51.93 -0.38 0.53 16 32 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.10 0.92 5.49 -51.93 -0.29 0.64 16 34 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 35 H 0.18 0.23 8.06 -52.49 -0.42 -0.20 16 36 H 0.18 0.32 8.06 -52.49 -0.42 -0.11 16 37 H 0.11 0.90 8.04 -51.93 -0.42 0.48 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 39 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 0.78 7.65 -51.93 -0.40 0.39 16 LS Contribution 368.55 15.07 5.55 5.55 Total: -1.00 -35.99 368.55 -9.28 -45.27 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -5.17 Total: 0.58 kcal Atomic # 6 Polarization: -1.28 SS G_CDS: -1.95 Total: -3.23 kcal Atomic # 7 Polarization: -47.62 SS G_CDS: -0.60 Total: -48.21 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 9 Polarization: -1.04 SS G_CDS: 0.03 Total: -1.00 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.99 -9.28 -45.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101299619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.549 kcal (2) G-P(sol) polarization free energy of solvation -35.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds