Wall clock time and date at job start Sat Apr 11 2020 05:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48499 * 109.47230 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46961 * 299.99900 * 3 2 1 6 6 H 1.48498 * 109.47108 * 59.99634 * 3 2 1 7 7 C 1.38804 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99896 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99765 * 0.02562 * 7 2 1 10 10 C 1.81007 * 99.99589 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.46760 * 180.02562 * 10 9 7 12 12 O 1.21279 * 120.00382 * 359.97438 * 11 10 9 13 13 N 1.34781 * 119.99754 * 180.02562 * 11 10 9 14 14 C 1.46504 * 119.99976 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47287 * 179.97438 * 14 13 11 16 16 N 1.46895 * 109.47007 * 179.97438 * 15 14 13 17 17 C 1.39122 * 110.99914 * 190.00076 * 16 15 14 18 18 N 1.32568 * 120.11139 * 236.05021 * 17 16 15 19 19 C 1.32307 * 119.94201 * 179.97438 * 18 17 16 20 20 C 1.38062 * 120.16738 * 359.97438 * 19 18 17 21 21 N 1.32344 * 120.21892 * 0.27677 * 20 19 18 22 22 C 1.32074 * 120.05740 * 359.44585 * 21 20 19 23 23 F 1.35104 * 120.08274 * 180.26996 * 22 21 20 24 24 C 1.46904 * 111.00033 * 66.05017 * 16 15 14 25 25 C 1.52998 * 117.50017 * 248.61884 * 24 16 15 26 26 C 1.52996 * 117.49943 * 179.97438 * 24 16 15 27 27 H 0.97003 * 119.99712 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47399 * 59.99824 * 10 9 7 29 29 H 1.09005 * 109.46569 * 299.99627 * 10 9 7 30 30 H 0.96995 * 119.99879 * 359.97438 * 13 11 10 31 31 H 1.09007 * 109.47124 * 59.99477 * 14 13 11 32 32 H 1.09002 * 109.47237 * 299.99967 * 14 13 11 33 33 H 1.09002 * 109.46623 * 59.99860 * 15 14 13 34 34 H 1.09000 * 109.46817 * 300.00334 * 15 14 13 35 35 H 1.08000 * 119.91534 * 179.97438 * 19 18 17 36 36 H 1.08002 * 119.88548 * 179.97438 * 20 19 18 37 37 H 1.09003 * 115.54868 * 34.33094 * 24 16 15 38 38 H 1.08998 * 117.49701 * 359.97438 * 25 24 16 39 39 H 1.09000 * 117.49796 * 145.02050 * 25 24 16 40 40 H 1.08998 * 117.49848 * 214.97672 * 26 24 16 41 41 H 1.09003 * 117.49758 * 0.02562 * 26 24 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.7104 1.3463 0.0006 5 1 1.8917 2.3964 -1.2125 6 1 1.8916 2.3964 1.2124 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0010 9 16 1.1292 -2.7280 0.0005 10 6 2.5158 -3.8915 0.0021 11 6 1.9873 -5.3027 0.0017 12 8 0.7910 -5.5023 0.0009 13 7 2.8441 -6.3431 0.0033 14 6 2.3303 -7.7151 0.0034 15 6 3.5023 -8.6986 0.0046 16 7 2.9871 -10.0743 0.0054 17 6 4.0099 -10.9896 0.2321 18 7 4.2327 -11.9665 -0.6360 19 6 5.2067 -12.8349 -0.4173 20 6 5.9925 -12.7261 0.7126 21 7 5.7726 -11.7564 1.5860 22 6 4.8063 -10.8815 1.3738 23 9 4.5849 -9.8881 2.2623 24 6 2.2816 -10.3729 -1.2480 25 6 0.7659 -10.5688 -1.1763 26 6 1.6832 -11.7722 -1.4058 27 1 -0.4850 0.8401 -0.0004 28 1 3.1237 -3.7310 0.8924 29 1 3.1250 -3.7318 -0.8876 30 1 3.8008 -6.1835 0.0043 31 1 1.7226 -7.8757 -0.8872 32 1 1.7206 -7.8747 0.8928 33 1 4.1102 -8.5382 0.8950 34 1 4.1115 -8.5389 -0.8849 35 1 5.3875 -13.6308 -1.1246 36 1 6.7860 -13.4377 0.8868 37 1 2.6860 -9.8952 -2.1404 38 1 0.2923 -10.4765 -0.1989 39 1 0.1728 -10.2197 -2.0215 40 1 1.6932 -12.2145 -2.4019 41 1 1.8126 -12.4710 -0.5793 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101299619.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:24 Heat of formation + Delta-G solvation = -2.129368 kcal Electronic energy + Delta-G solvation = -26095.852304 eV Core-core repulsion = 22052.716837 eV Total energy + Delta-G solvation = -4043.135467 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.27217 -42.30404 -40.70971 -39.65011 -36.48974 -35.61860 -34.79338 -34.58096 -32.18221 -30.88836 -28.73336 -27.63313 -26.10247 -24.93938 -23.87786 -23.18064 -21.94465 -21.79278 -19.87724 -19.35707 -19.13133 -18.38041 -17.99030 -17.40829 -17.11790 -17.10224 -16.87908 -16.79222 -16.07634 -16.03534 -15.60233 -15.38475 -15.10129 -14.77328 -14.65262 -14.49787 -14.27613 -14.06287 -13.66165 -13.20963 -13.15923 -12.91417 -12.85263 -12.68441 -12.56881 -12.53359 -12.28833 -11.71584 -11.57835 -11.24372 -11.15831 -11.04049 -10.86236 -10.32950 -10.27284 -10.19308 -9.36726 -8.66629 -8.34799 -6.12680 -0.47153 -0.12991 1.24613 1.41520 1.44756 1.56428 1.58567 1.79226 2.17478 2.27072 2.42426 2.57501 2.91166 2.99430 3.05453 3.14108 3.32337 3.58564 3.77394 3.91949 3.93378 3.99198 4.01100 4.08912 4.21753 4.29582 4.31936 4.44932 4.51011 4.52026 4.74237 4.80088 4.82142 5.05913 5.07709 5.27958 5.30585 5.42491 5.47371 5.71140 6.06527 6.20264 6.43572 6.53575 7.06678 7.19623 8.74647 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.022015 B = 0.002029 C = 0.001909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.530909 B =13799.519011 C =14667.304519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.129 4.129 11 C 0.537 3.463 12 O -0.562 6.562 13 N -0.713 5.713 14 C 0.136 3.864 15 C 0.051 3.949 16 N -0.448 5.448 17 C 0.249 3.751 18 N -0.449 5.449 19 C 0.082 3.918 20 C 0.060 3.940 21 N -0.473 5.473 22 C 0.215 3.785 23 F -0.110 7.110 24 C -0.001 4.001 25 C -0.172 4.172 26 C -0.120 4.120 27 H 0.271 0.729 28 H 0.111 0.889 29 H 0.113 0.887 30 H 0.417 0.583 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.074 0.926 35 H 0.224 0.776 36 H 0.220 0.780 37 H 0.110 0.890 38 H 0.087 0.913 39 H 0.108 0.892 40 H 0.115 0.885 41 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.690 -30.798 -3.578 34.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.280 4.280 11 C 0.322 3.678 12 O -0.440 6.440 13 N -0.368 5.368 14 C 0.011 3.989 15 C -0.075 4.075 16 N -0.165 5.165 17 C 0.014 3.986 18 N -0.168 5.168 19 C -0.079 4.079 20 C -0.100 4.100 21 N -0.193 5.193 22 C 0.056 3.944 23 F -0.089 7.089 24 C -0.108 4.108 25 C -0.210 4.210 26 C -0.158 4.158 27 H 0.080 0.920 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.254 0.746 31 H 0.086 0.914 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.093 0.907 35 H 0.240 0.760 36 H 0.236 0.764 37 H 0.128 0.872 38 H 0.106 0.894 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 13.133 -30.970 -3.160 33.787 hybrid contribution 2.128 1.704 0.064 2.727 sum 15.261 -29.266 -3.096 33.151 Atomic orbital electron populations 1.70194 1.07964 1.28534 1.48085 1.26146 0.95993 1.03366 0.93801 0.84892 0.78603 0.76308 0.78055 1.18015 1.19904 1.20004 1.23234 0.95359 0.91937 1.58699 0.89853 1.85599 1.10524 0.99260 1.97051 1.23364 1.03607 0.94051 1.06994 1.20042 0.86140 0.86557 0.75015 1.90703 1.17355 1.86035 1.49860 1.45561 1.10476 1.04748 1.75987 1.21030 0.95729 0.79428 1.02665 1.22455 0.96526 0.84140 1.04381 1.58608 1.21056 1.01991 1.34816 1.20507 0.91023 0.95682 0.91374 1.68712 1.18178 1.03556 1.26354 1.24524 0.88799 0.96974 0.97622 1.24242 1.00974 0.94844 0.89988 1.67772 1.15765 1.03491 1.32260 1.18693 0.96672 0.90362 0.88711 1.91577 1.93301 1.56868 1.67195 1.22393 0.95067 1.03814 0.89495 1.23274 0.91331 1.02812 1.03577 1.22838 1.00004 0.89476 1.03468 0.92006 0.87103 0.86931 0.74620 0.91352 0.92123 0.88101 0.90741 0.75968 0.76370 0.87232 0.89409 0.87347 0.86642 0.89786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.20 13.22 21.65 0.29 -55.92 16 2 C 0.01 0.66 5.49 84.86 0.47 1.13 16 3 Si 1.00 43.74 29.55 68.60 2.03 45.77 16 4 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -31.12 9.50 67.96 0.65 -30.47 16 8 H 0.08 4.42 7.80 -2.91 -0.02 4.40 16 9 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 10 C -0.13 -5.08 6.16 71.23 0.44 -4.64 16 11 C 0.54 19.82 7.85 87.65 0.69 20.51 16 12 O -0.56 -26.21 15.86 -3.03 -0.05 -26.26 16 13 N -0.71 -18.02 5.56 -463.05 -2.57 -20.60 16 14 C 0.14 3.19 5.67 86.38 0.49 3.68 16 15 C 0.05 0.91 4.78 86.30 0.41 1.32 16 16 N -0.45 -8.39 4.64 -677.20 -3.14 -11.53 16 17 C 0.25 4.44 6.14 133.09 0.82 5.26 16 18 N -0.45 -6.04 7.50 -192.42 -1.44 -7.48 16 19 C 0.08 0.52 11.21 84.58 0.95 1.47 16 20 C 0.06 0.46 11.21 84.57 0.95 1.41 16 21 N -0.47 -8.07 10.50 -195.79 -2.06 -10.13 16 22 C 0.22 4.26 8.08 84.99 0.69 4.95 16 23 F -0.11 -2.52 14.83 44.97 0.67 -1.85 16 24 C 0.00 -0.01 3.73 44.91 0.17 0.16 16 25 C -0.17 -2.90 10.40 30.61 0.32 -2.58 16 26 C -0.12 -1.70 8.66 30.61 0.27 -1.44 16 27 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 28 H 0.11 3.93 8.14 -2.40 -0.02 3.91 16 29 H 0.11 3.93 8.14 -2.39 -0.02 3.91 16 30 H 0.42 7.48 8.47 -92.71 -0.79 6.69 16 31 H 0.07 1.72 7.33 -2.38 -0.02 1.70 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.10 1.82 5.49 -2.39 -0.01 1.81 16 34 H 0.07 1.10 8.07 -2.39 -0.02 1.08 16 35 H 0.22 -0.65 8.06 -2.91 -0.02 -0.67 16 36 H 0.22 -0.25 8.06 -2.91 -0.02 -0.27 16 37 H 0.11 1.71 8.04 -2.39 -0.02 1.70 16 38 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 39 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.12 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.08 1.35 7.65 -2.39 -0.02 1.33 16 Total: -1.00 -82.12 368.55 0.14 -81.98 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: 0.29 Total: 14.86 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 7.29 Total: 0.75 kcal Atomic # 7 Polarization: -96.72 SS G_CDS: -8.93 Total: -105.65 kcal Atomic # 8 Polarization: -26.21 SS G_CDS: -0.05 Total: -26.26 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.67 Total: -1.85 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.77 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -82.12 0.14 -81.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101299619.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.852 kcal (2) G-P(sol) polarization free energy of solvation -82.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds