Wall clock time and date at job start Sat Apr 11 2020 05:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48505 * 109.46913 * 269.99942 * 3 2 1 5 5 H 1.48508 * 109.46992 * 150.00218 * 3 2 1 6 6 H 1.48499 * 109.47397 * 29.99936 * 3 2 1 7 7 C 1.38800 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00278 * 359.97438 * 7 2 1 9 9 S 1.76208 * 120.00099 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99990 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00265 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99869 * 180.02562 * 11 10 9 14 14 C 1.47423 * 125.64691 * 355.10085 * 13 11 10 15 15 C 1.54909 * 104.83073 * 155.83495 * 14 13 11 16 16 C 1.55156 * 101.58131 * 37.00831 * 15 14 13 17 17 C 1.47016 * 125.64791 * 174.79432 * 13 11 10 18 18 H 1.09006 * 109.88243 * 300.51370 * 17 13 11 19 19 C 1.52998 * 109.88230 * 61.67684 * 17 13 11 20 20 N 1.46499 * 109.47212 * 185.23683 * 19 17 13 21 21 C 1.38542 * 120.00332 * 185.00809 * 20 19 17 22 22 N 1.32459 * 119.18399 * 359.72000 * 21 20 19 23 23 C 1.32301 * 120.76392 * 179.76662 * 22 21 20 24 24 C 1.38785 * 119.16491 * 0.50673 * 23 22 21 25 25 F 1.35098 * 120.74508 * 179.73243 * 24 23 22 26 26 C 1.38786 * 118.51251 * 359.74858 * 24 23 22 27 27 N 1.32303 * 119.16443 * 0.02562 * 26 24 23 28 28 H 0.96997 * 119.99681 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47641 * 300.00577 * 10 9 7 30 30 H 1.09008 * 109.46678 * 60.00414 * 10 9 7 31 31 H 1.09003 * 110.36873 * 274.67338 * 14 13 11 32 32 H 1.09001 * 110.37047 * 36.99820 * 14 13 11 33 33 H 1.09003 * 111.00454 * 155.07971 * 15 14 13 34 34 H 1.08999 * 111.00827 * 278.89547 * 15 14 13 35 35 H 1.09005 * 110.72252 * 82.86072 * 16 15 14 36 36 H 1.09001 * 110.72506 * 205.95125 * 16 15 14 37 37 H 1.09002 * 109.47006 * 305.23276 * 19 17 13 38 38 H 1.08996 * 109.46892 * 65.23497 * 19 17 13 39 39 H 0.97005 * 120.00272 * 4.99907 * 20 19 17 40 40 H 1.07993 * 120.41920 * 180.23444 * 23 22 21 41 41 H 1.08000 * 120.41650 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 3.5480 1.4401 0.7000 6 1 1.4478 2.6527 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2022 -0.0012 10 6 4.0865 -2.9847 -0.0009 11 6 5.5730 -3.2327 -0.0021 12 8 6.3440 -2.2965 -0.0025 13 7 6.0456 -4.4949 -0.0026 14 6 5.2291 -5.7181 0.1001 15 6 6.0922 -6.8269 -0.5519 16 6 7.5180 -6.4221 -0.0931 17 6 7.4601 -4.8802 -0.1121 18 1 7.8757 -4.5032 -1.0467 19 6 8.2459 -4.3180 1.0742 20 7 9.6721 -4.5994 0.8928 21 6 10.5747 -4.2764 1.8930 22 7 10.1312 -3.7085 3.0044 23 6 10.9649 -3.3912 3.9815 24 6 12.3193 -3.6510 3.8259 25 9 13.1996 -3.3352 4.8009 26 6 12.7493 -4.2422 2.6462 27 7 11.8605 -4.5376 1.7118 28 1 -0.4849 0.8400 0.0004 29 1 3.6439 -3.4316 0.8892 30 1 3.6432 -3.4318 -0.8908 31 1 5.0322 -5.9561 1.1455 32 1 4.2930 -5.5963 -0.4449 33 1 5.8220 -7.8099 -0.1661 34 1 6.0082 -6.7993 -1.6383 35 1 7.7191 -6.7917 0.9125 36 1 8.2676 -6.7890 -0.7942 37 1 8.0929 -3.2404 1.1334 38 1 7.8975 -4.7856 1.9950 39 1 9.9846 -5.0120 0.0724 40 1 10.5968 -2.9318 4.8868 41 1 13.7964 -4.4576 2.4925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001103791818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:48 Heat of formation + Delta-G solvation = -15.343554 kcal Electronic energy + Delta-G solvation = -26109.012150 eV Core-core repulsion = 22065.303673 eV Total energy + Delta-G solvation = -4043.708477 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 2.38 seconds Orbital eigenvalues (eV) -49.15341 -41.24061 -40.22073 -37.59593 -36.03317 -34.14916 -32.46130 -32.12918 -31.44153 -29.63782 -28.56550 -25.92669 -25.63529 -25.03512 -23.40971 -22.76113 -21.34991 -19.57223 -18.57089 -18.24750 -17.72853 -17.63782 -16.97284 -16.48620 -16.34258 -15.42495 -15.21337 -15.02206 -14.93140 -14.82078 -14.47545 -14.33263 -14.08967 -13.89351 -13.40039 -13.35486 -13.11915 -12.84348 -12.77162 -12.41587 -12.06043 -11.92114 -11.55821 -11.42960 -11.31496 -11.27153 -11.09977 -11.02200 -10.63489 -10.43097 -9.87696 -9.57267 -9.46481 -9.02249 -8.74426 -8.52324 -8.30277 -6.94532 -6.30803 -4.02858 0.64269 0.64783 2.29101 2.72399 2.85745 3.18034 3.31922 3.41281 3.49369 3.56833 3.65198 3.74405 4.13871 4.21964 4.27101 4.31621 4.48121 4.48461 4.60096 4.67796 4.80630 4.95089 5.07020 5.08348 5.16839 5.23698 5.37097 5.41576 5.48167 5.55093 5.68080 5.75869 5.79915 5.85510 5.94741 5.97861 6.23197 6.35269 6.64981 7.02805 7.46200 7.88427 7.92244 8.33950 8.39558 9.15369 10.78380 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.002548 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.857735 B =10984.577136 C =12764.732176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.856 3.144 4 H -0.267 1.267 5 H -0.235 1.235 6 H -0.274 1.274 7 C -0.521 4.521 8 H 0.088 0.912 9 S -0.141 6.141 10 C -0.118 4.118 11 C 0.548 3.452 12 O -0.511 6.511 13 N -0.618 5.618 14 C 0.099 3.901 15 C -0.132 4.132 16 C -0.129 4.129 17 C 0.130 3.870 18 H 0.081 0.919 19 C 0.122 3.878 20 N -0.686 5.686 21 C 0.561 3.439 22 N -0.539 5.539 23 C 0.177 3.823 24 C -0.080 4.080 25 F -0.129 7.129 26 C 0.174 3.826 27 N -0.550 5.550 28 H 0.271 0.729 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.073 0.927 39 H 0.414 0.586 40 H 0.179 0.821 41 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.888 -16.612 3.632 27.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.113 4.113 3 Si 0.681 3.319 4 H -0.192 1.192 5 H -0.159 1.159 6 H -0.199 1.199 7 C -0.668 4.668 8 H 0.106 0.894 9 S 0.085 5.915 10 C -0.268 4.268 11 C 0.337 3.663 12 O -0.385 6.385 13 N -0.356 5.356 14 C -0.024 4.024 15 C -0.170 4.170 16 C -0.167 4.167 17 C 0.025 3.975 18 H 0.099 0.901 19 C -0.003 4.003 20 N -0.322 5.322 21 C 0.204 3.796 22 N -0.261 5.261 23 C 0.007 3.993 24 C -0.108 4.108 25 F -0.108 7.108 26 C 0.004 3.996 27 N -0.271 5.271 28 H 0.081 0.919 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.090 0.910 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.097 0.903 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.107 0.893 38 H 0.092 0.908 39 H 0.252 0.748 40 H 0.196 0.804 41 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 21.913 -15.200 2.917 26.828 hybrid contribution 0.035 -0.209 0.526 0.567 sum 21.948 -15.409 3.443 27.038 Atomic orbital electron populations 1.69936 1.05902 1.27786 1.48012 1.24708 0.94452 0.98959 0.93166 0.86743 0.81922 0.83299 0.79941 1.19213 1.15903 1.19913 1.22297 0.88166 0.97532 1.58849 0.89365 1.84816 1.09402 0.99850 1.97424 1.23260 0.93434 1.04373 1.05743 1.20068 0.90682 0.80541 0.75055 1.90711 1.58679 1.41224 1.47888 1.48447 1.06098 1.05769 1.75263 1.22374 0.95197 0.83694 1.01178 1.22782 0.94333 0.98501 1.01401 1.22765 0.98019 0.93160 1.02799 1.21620 0.82990 0.94779 0.98113 0.90082 1.21844 0.77198 1.03153 0.98120 1.44019 1.05504 1.65508 1.17202 1.19336 0.85466 0.87904 0.86880 1.68057 1.38675 1.17736 1.01601 1.23182 0.87567 0.91466 0.97036 1.19118 0.89761 1.11128 0.90801 1.91509 1.67455 1.91442 1.60394 1.23066 1.00057 0.89873 0.86569 1.67939 1.01320 1.25290 1.32596 0.91920 0.88455 0.88489 0.91032 0.89817 0.89638 0.90304 0.90203 0.89924 0.89265 0.90836 0.74823 0.80418 0.80526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.38 13.97 55.49 0.78 -25.61 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.69 16 3 Si 0.86 21.72 27.74 -169.99 -4.71 17.00 16 4 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.52 -14.85 10.04 30.94 0.31 -14.54 16 8 H 0.09 2.61 8.03 -52.49 -0.42 2.19 16 9 S -0.14 -3.55 18.55 -107.50 -1.99 -5.54 16 10 C -0.12 -2.24 5.09 36.01 0.18 -2.06 16 11 C 0.55 9.57 7.69 -10.98 -0.08 9.49 16 12 O -0.51 -10.73 14.65 5.56 0.08 -10.65 16 13 N -0.62 -7.81 3.07 -163.03 -0.50 -8.31 16 14 C 0.10 0.90 6.74 -2.53 -0.02 0.89 16 15 C -0.13 -0.86 7.08 -24.58 -0.17 -1.03 16 16 C -0.13 -0.87 6.23 -24.90 -0.16 -1.02 16 17 C 0.13 1.33 2.95 -66.96 -0.20 1.13 16 18 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 19 C 0.12 1.41 5.05 -4.04 -0.02 1.39 16 20 N -0.69 -6.99 5.52 -62.29 -0.34 -7.34 16 21 C 0.56 6.50 8.43 -322.71 -2.72 3.78 16 22 N -0.54 -6.51 9.58 -13.86 -0.13 -6.64 16 23 C 0.18 1.71 11.29 -17.15 -0.19 1.51 16 24 C -0.08 -0.71 7.38 -39.18 -0.29 -1.00 16 25 F -0.13 -1.14 17.30 2.25 0.04 -1.10 16 26 C 0.17 1.47 11.29 -17.15 -0.19 1.28 16 27 N -0.55 -5.77 10.46 -13.86 -0.14 -5.91 16 28 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 29 H 0.10 1.73 8.14 -51.92 -0.42 1.31 16 30 H 0.10 1.72 7.95 -51.91 -0.41 1.31 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.76 7.47 -51.93 -0.39 0.38 16 33 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.53 7.77 -51.93 -0.40 0.13 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 1.39 6.55 -51.93 -0.34 1.05 16 38 H 0.07 0.87 8.00 -51.93 -0.42 0.46 16 39 H 0.41 3.39 8.53 -40.82 -0.35 3.04 16 40 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 41 H 0.18 0.90 8.06 -52.49 -0.42 0.48 16 LS Contribution 364.11 15.07 5.49 5.49 Total: -1.00 -34.86 364.11 -10.36 -45.22 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.27 Total: 0.89 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -3.65 Total: 2.50 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.35 Total: -53.81 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.08 Total: -10.65 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.71 Total: 17.00 kcal Atomic # 16 Polarization: -3.55 SS G_CDS: -1.99 Total: -5.54 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.86 -10.36 -45.22 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103791818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.876 kcal (2) G-P(sol) polarization free energy of solvation -34.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.38 seconds