Wall clock time and date at job start Sat Apr 11 2020 05:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48505 * 109.46913 * 269.99942 * 3 2 1 5 5 H 1.48508 * 109.46992 * 150.00218 * 3 2 1 6 6 H 1.48499 * 109.47397 * 29.99936 * 3 2 1 7 7 C 1.38800 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00278 * 359.97438 * 7 2 1 9 9 S 1.76208 * 120.00099 * 179.97438 * 7 2 1 10 10 C 1.80997 * 99.99990 * 179.97438 * 9 7 2 11 11 C 1.50701 * 109.46906 * 179.97438 * 10 9 7 12 12 O 1.21276 * 120.00265 * 0.02562 * 11 10 9 13 13 N 1.34782 * 119.99869 * 180.02562 * 11 10 9 14 14 C 1.47423 * 125.64691 * 355.10085 * 13 11 10 15 15 C 1.54909 * 104.83073 * 155.83495 * 14 13 11 16 16 C 1.55156 * 101.58131 * 37.00831 * 15 14 13 17 17 C 1.47016 * 125.64791 * 174.79432 * 13 11 10 18 18 H 1.09006 * 109.88243 * 300.51370 * 17 13 11 19 19 C 1.52998 * 109.88230 * 61.67684 * 17 13 11 20 20 N 1.46499 * 109.47212 * 185.23683 * 19 17 13 21 21 C 1.38542 * 120.00332 * 185.00809 * 20 19 17 22 22 N 1.32459 * 119.18399 * 359.72000 * 21 20 19 23 23 C 1.32301 * 120.76392 * 179.76662 * 22 21 20 24 24 C 1.38785 * 119.16491 * 0.50673 * 23 22 21 25 25 F 1.35098 * 120.74508 * 179.73243 * 24 23 22 26 26 C 1.38786 * 118.51251 * 359.74858 * 24 23 22 27 27 N 1.32303 * 119.16443 * 0.02562 * 26 24 23 28 28 H 0.96997 * 119.99681 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47641 * 300.00577 * 10 9 7 30 30 H 1.09008 * 109.46678 * 60.00414 * 10 9 7 31 31 H 1.09003 * 110.36873 * 274.67338 * 14 13 11 32 32 H 1.09001 * 110.37047 * 36.99820 * 14 13 11 33 33 H 1.09003 * 111.00454 * 155.07971 * 15 14 13 34 34 H 1.08999 * 111.00827 * 278.89547 * 15 14 13 35 35 H 1.09005 * 110.72252 * 82.86072 * 16 15 14 36 36 H 1.09001 * 110.72506 * 205.95125 * 16 15 14 37 37 H 1.09002 * 109.47006 * 305.23276 * 19 17 13 38 38 H 1.08996 * 109.46892 * 65.23497 * 19 17 13 39 39 H 0.97005 * 120.00272 * 4.99907 * 20 19 17 40 40 H 1.07993 * 120.41920 * 180.23444 * 23 22 21 41 41 H 1.08000 * 120.41650 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 3.5480 1.4401 0.7000 6 1 1.4478 2.6527 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4703 -2.1374 -0.0005 9 16 3.7723 -1.2022 -0.0012 10 6 4.0865 -2.9847 -0.0009 11 6 5.5730 -3.2327 -0.0021 12 8 6.3440 -2.2965 -0.0025 13 7 6.0456 -4.4949 -0.0026 14 6 5.2291 -5.7181 0.1001 15 6 6.0922 -6.8269 -0.5519 16 6 7.5180 -6.4221 -0.0931 17 6 7.4601 -4.8802 -0.1121 18 1 7.8757 -4.5032 -1.0467 19 6 8.2459 -4.3180 1.0742 20 7 9.6721 -4.5994 0.8928 21 6 10.5747 -4.2764 1.8930 22 7 10.1312 -3.7085 3.0044 23 6 10.9649 -3.3912 3.9815 24 6 12.3193 -3.6510 3.8259 25 9 13.1996 -3.3352 4.8009 26 6 12.7493 -4.2422 2.6462 27 7 11.8605 -4.5376 1.7118 28 1 -0.4849 0.8400 0.0004 29 1 3.6439 -3.4316 0.8892 30 1 3.6432 -3.4318 -0.8908 31 1 5.0322 -5.9561 1.1455 32 1 4.2930 -5.5963 -0.4449 33 1 5.8220 -7.8099 -0.1661 34 1 6.0082 -6.7993 -1.6383 35 1 7.7191 -6.7917 0.9125 36 1 8.2676 -6.7890 -0.7942 37 1 8.0929 -3.2404 1.1334 38 1 7.8975 -4.7856 1.9950 39 1 9.9846 -5.0120 0.0724 40 1 10.5968 -2.9318 4.8868 41 1 13.7964 -4.4576 2.4925 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001103791818.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:44 Heat of formation + Delta-G solvation = -37.559103 kcal Electronic energy + Delta-G solvation = -26109.975489 eV Core-core repulsion = 22065.303673 eV Total energy + Delta-G solvation = -4044.671816 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 5.53 seconds Orbital eigenvalues (eV) -49.86448 -42.01704 -41.28305 -38.74842 -36.87006 -34.91678 -34.68512 -33.18617 -32.21452 -30.72331 -29.62566 -27.86212 -26.71287 -25.79526 -24.27413 -23.64281 -22.08632 -20.67769 -19.80160 -19.27187 -19.00254 -18.43505 -18.12016 -17.50402 -17.12691 -17.09277 -16.50290 -16.20842 -15.96563 -15.84316 -15.54548 -15.36283 -15.04830 -14.93003 -14.90360 -14.21045 -14.11882 -14.07800 -13.72130 -13.58870 -13.35532 -13.07624 -12.99989 -12.83306 -12.67793 -12.13148 -12.11701 -12.10181 -11.87989 -11.66111 -11.29424 -11.18431 -10.94107 -10.54782 -10.24060 -9.81142 -9.10256 -9.01858 -8.52798 -6.23716 -0.11827 -0.06550 0.93364 1.29702 1.37383 1.46376 1.49702 1.66634 2.14144 2.23742 2.63703 2.67129 2.85469 2.93760 3.03083 3.37575 3.52568 3.60442 3.77361 3.79194 3.82530 3.87873 4.08208 4.16239 4.23548 4.38469 4.42095 4.59407 4.63019 4.74719 4.81425 4.92978 4.99022 5.10751 5.19250 5.32634 5.36256 5.52425 5.69828 5.90216 6.10361 6.27531 6.31446 6.92501 7.02228 7.12657 8.59547 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.012633 B = 0.002548 C = 0.002193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2215.857735 B =10984.577136 C =12764.732176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.047 3.953 3 Si 0.912 3.088 4 H -0.262 1.262 5 H -0.239 1.239 6 H -0.259 1.259 7 C -0.527 4.527 8 H 0.064 0.936 9 S -0.177 6.177 10 C -0.102 4.102 11 C 0.548 3.452 12 O -0.556 6.556 13 N -0.609 5.609 14 C 0.085 3.915 15 C -0.120 4.120 16 C -0.117 4.117 17 C 0.127 3.873 18 H 0.078 0.922 19 C 0.138 3.862 20 N -0.679 5.679 21 C 0.545 3.455 22 N -0.570 5.570 23 C 0.169 3.831 24 C -0.077 4.077 25 F -0.127 7.127 26 C 0.177 3.823 27 N -0.557 5.557 28 H 0.277 0.723 29 H 0.110 0.890 30 H 0.112 0.888 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.112 0.888 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.108 0.892 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.424 0.576 40 H 0.198 0.802 41 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.879 -18.555 3.550 30.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.159 4.159 3 Si 0.735 3.265 4 H -0.187 1.187 5 H -0.163 1.163 6 H -0.183 1.183 7 C -0.674 4.674 8 H 0.082 0.918 9 S 0.050 5.950 10 C -0.253 4.253 11 C 0.336 3.664 12 O -0.433 6.433 13 N -0.344 5.344 14 C -0.037 4.037 15 C -0.158 4.158 16 C -0.155 4.155 17 C 0.023 3.977 18 H 0.096 0.904 19 C 0.013 3.987 20 N -0.317 5.317 21 C 0.188 3.812 22 N -0.293 5.293 23 C 0.000 4.000 24 C -0.105 4.105 25 F -0.106 7.106 26 C 0.008 3.992 27 N -0.279 5.279 28 H 0.087 0.913 29 H 0.128 0.872 30 H 0.130 0.870 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.130 0.870 34 H 0.102 0.898 35 H 0.104 0.896 36 H 0.126 0.874 37 H 0.063 0.937 38 H 0.087 0.913 39 H 0.263 0.737 40 H 0.215 0.785 41 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 23.917 -17.204 2.842 29.599 hybrid contribution -0.496 0.237 0.603 0.816 sum 23.422 -16.967 3.445 29.126 Atomic orbital electron populations 1.70009 1.07214 1.29011 1.49120 1.25533 0.95264 1.02149 0.92940 0.85895 0.80665 0.79782 0.80203 1.18699 1.16250 1.18279 1.22431 0.90054 0.96712 1.58221 0.91812 1.84751 1.06661 1.06023 1.97567 1.23208 0.95446 0.99520 1.07087 1.19694 0.89484 0.81847 0.75391 1.90697 1.59182 1.43055 1.50413 1.48393 1.08020 1.05163 1.72846 1.22747 0.95481 0.83004 1.02433 1.22790 0.93021 0.98436 1.01574 1.22760 0.99071 0.89625 1.04018 1.21827 0.81098 0.97518 0.97225 0.90381 1.21490 0.78346 1.00317 0.98596 1.43867 1.04760 1.65579 1.17502 1.19567 0.86140 0.88327 0.87127 1.68063 1.39855 1.18929 1.02474 1.23549 0.87981 0.91206 0.97234 1.19120 0.89497 1.10863 0.91002 1.91518 1.67295 1.91412 1.60368 1.23647 1.01232 0.88528 0.85766 1.68015 1.00975 1.25728 1.33168 0.91344 0.87181 0.87028 0.89903 0.89691 0.86983 0.89801 0.89589 0.87398 0.93737 0.91271 0.73693 0.78526 0.77111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.67 13.97 21.65 0.30 -55.37 16 2 C 0.05 2.74 5.50 84.86 0.47 3.21 16 3 Si 0.91 45.25 27.74 68.60 1.90 47.16 16 4 H -0.26 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.24 -11.88 6.74 99.48 0.67 -11.21 16 6 H -0.26 -12.01 7.11 99.48 0.71 -11.31 16 7 C -0.53 -30.63 10.04 67.95 0.68 -29.94 16 8 H 0.06 3.89 8.03 -2.91 -0.02 3.87 16 9 S -0.18 -8.99 18.55 -56.49 -1.05 -10.04 16 10 C -0.10 -3.87 5.09 71.24 0.36 -3.51 16 11 C 0.55 19.18 7.69 87.66 0.67 19.85 16 12 O -0.56 -23.96 14.65 -3.02 -0.04 -24.00 16 13 N -0.61 -14.74 3.07 -788.08 -2.42 -17.16 16 14 C 0.08 1.35 6.74 86.86 0.59 1.94 16 15 C -0.12 -1.10 7.08 31.99 0.23 -0.88 16 16 C -0.12 -1.18 6.23 31.78 0.20 -0.98 16 17 C 0.13 2.43 2.95 45.34 0.13 2.57 16 18 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 19 C 0.14 3.20 5.05 86.38 0.44 3.63 16 20 N -0.68 -13.43 5.52 -350.99 -1.94 -15.37 16 21 C 0.55 12.34 8.43 261.45 2.20 14.54 16 22 N -0.57 -13.77 9.58 -197.78 -1.89 -15.67 16 23 C 0.17 3.15 11.29 84.75 0.96 4.10 16 24 C -0.08 -1.27 7.38 22.53 0.17 -1.10 16 25 F -0.13 -2.03 17.30 44.97 0.78 -1.25 16 26 C 0.18 2.66 11.29 84.75 0.96 3.61 16 27 N -0.56 -10.91 10.46 -197.77 -2.07 -12.98 16 28 H 0.28 15.58 8.31 -92.71 -0.77 14.81 16 29 H 0.11 3.89 8.14 -2.40 -0.02 3.87 16 30 H 0.11 3.90 7.95 -2.39 -0.02 3.88 16 31 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.36 7.47 -2.39 -0.02 1.35 16 33 H 0.11 0.54 8.14 -2.39 -0.02 0.53 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 0.84 7.77 -2.38 -0.02 0.82 16 36 H 0.11 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.04 1.46 6.55 -2.39 -0.02 1.44 16 38 H 0.07 1.63 8.00 -2.39 -0.02 1.61 16 39 H 0.42 6.38 8.53 -92.70 -0.79 5.59 16 40 H 0.20 2.60 8.06 -2.91 -0.02 2.58 16 41 H 0.21 1.51 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -78.10 364.11 1.87 -76.23 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 0.25 Total: 11.39 kcal Atomic # 6 Polarization: 9.00 SS G_CDS: 8.05 Total: 17.05 kcal Atomic # 7 Polarization: -108.52 SS G_CDS: -8.01 Total: -116.53 kcal Atomic # 8 Polarization: -23.96 SS G_CDS: -0.04 Total: -24.00 kcal Atomic # 9 Polarization: -2.03 SS G_CDS: 0.78 Total: -1.25 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 1.90 Total: 47.16 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.05 Total: -10.04 kcal Total: -78.10 1.87 -76.23 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001103791818.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.670 kcal (2) G-P(sol) polarization free energy of solvation -78.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.429 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.54 seconds