Wall clock time and date at job start Sat Apr 11 2020 05:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86804 * 120.00187 * 2 1 4 4 H 1.48505 * 109.47052 * 270.00242 * 3 2 1 5 5 H 1.48501 * 109.46859 * 30.00054 * 3 2 1 6 6 H 1.48492 * 109.46951 * 150.00063 * 3 2 1 7 7 C 1.38802 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99835 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00255 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47209 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00113 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00150 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00198 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.46653 * 35.00100 * 14 13 11 16 16 C 1.52997 * 109.47035 * 154.99692 * 14 13 11 17 17 N 1.46497 * 109.47371 * 305.00232 * 16 14 13 18 18 C 1.39155 * 119.99969 * 179.97438 * 17 16 14 19 19 C 1.39206 * 120.06523 * 359.73192 * 18 17 16 20 20 N 1.32005 * 119.93347 * 179.70319 * 19 18 17 21 21 C 1.32393 * 120.05640 * 0.56718 * 20 19 18 22 22 F 1.35104 * 119.93983 * 179.72679 * 21 20 19 23 23 C 1.38469 * 120.12242 * 359.70779 * 21 20 19 24 24 N 1.32211 * 120.07086 * 359.97438 * 23 21 20 25 25 C 1.52996 * 109.47477 * 275.00153 * 14 13 11 26 26 C 1.53002 * 117.49888 * 356.25271 * 25 14 13 27 27 C 1.53000 * 117.50107 * 64.91033 * 25 14 13 28 28 H 0.97005 * 120.00063 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47363 * 59.99546 * 10 9 7 30 30 H 1.09002 * 109.46598 * 300.00140 * 10 9 7 31 31 H 0.97000 * 119.99550 * 359.97438 * 13 11 10 32 32 H 1.08995 * 109.47084 * 65.00455 * 16 14 13 33 33 H 1.09003 * 109.47102 * 185.00047 * 16 14 13 34 34 H 0.96997 * 120.00193 * 0.02562 * 17 16 14 35 35 H 1.08004 * 120.03075 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.96586 * 179.97438 * 23 21 20 37 37 H 1.09002 * 115.54951 * 210.58245 * 25 14 13 38 38 H 1.09000 * 117.49996 * 215.00804 * 26 25 14 39 39 H 1.08999 * 117.49664 * 0.02562 * 26 25 14 40 40 H 1.09008 * 117.49673 * 359.97438 * 27 25 14 41 41 H 1.08999 * 117.49959 * 144.99502 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8915 -0.0013 11 6 1.9873 -5.3027 -0.0030 12 8 0.7910 -5.5023 -0.0040 13 7 2.8440 -6.3432 -0.0024 14 6 2.3303 -7.7151 -0.0035 15 1 1.4152 -7.7599 -0.5940 16 6 3.3764 -8.6509 -0.6123 17 7 3.7499 -8.1660 -1.9433 18 6 4.6931 -8.8583 -2.6967 19 6 5.2866 -10.0087 -2.1847 20 7 6.1767 -10.6666 -2.9040 21 6 6.5131 -10.2271 -4.1066 22 9 7.4284 -10.8993 -4.8386 23 6 5.9284 -9.0798 -4.6159 24 7 5.0318 -8.4205 -3.9023 25 6 2.0320 -8.1492 1.4330 26 6 2.3874 -7.1713 2.5547 27 6 0.9222 -7.4063 2.1795 28 1 -0.4850 0.8401 -0.0004 29 1 3.1238 -3.7318 0.8891 30 1 3.1250 -3.7309 -0.8908 31 1 3.8008 -6.1835 -0.0013 32 1 4.2590 -8.6741 0.0268 33 1 2.9612 -9.6554 -0.6949 34 1 3.3404 -7.3619 -2.2991 35 1 5.0159 -10.3649 -1.2017 36 1 6.2051 -8.7233 -5.5971 37 1 2.1506 -9.2134 1.6367 38 1 2.7398 -7.5921 3.4964 39 1 2.8333 -6.2185 2.2693 40 1 0.4047 -6.6080 1.6473 41 1 0.3105 -7.9818 2.8743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001109763012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:24 Heat of formation + Delta-G solvation = 9.216798 kcal Electronic energy + Delta-G solvation = -26018.115822 eV Core-core repulsion = 21975.472362 eV Total energy + Delta-G solvation = -4042.643460 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.23947 -41.41572 -40.18503 -37.52005 -36.43123 -34.68024 -33.73681 -32.48046 -31.16426 -29.47433 -28.13931 -25.67544 -25.50127 -24.29532 -22.93334 -22.27871 -21.16165 -20.10935 -18.97380 -18.34485 -17.88753 -17.78500 -16.71491 -16.53056 -16.45127 -16.22276 -15.44729 -15.19581 -14.90204 -14.84699 -14.71800 -14.27536 -14.14688 -13.92967 -13.72706 -13.39423 -13.17706 -12.68198 -12.38916 -12.07957 -12.06834 -11.95544 -11.79444 -11.40661 -11.10742 -11.07269 -10.81256 -10.64520 -10.42505 -10.14104 -9.87354 -9.67589 -9.53250 -9.12330 -9.05006 -8.31689 -8.28642 -6.56497 -6.27118 -3.98104 0.36267 0.68610 2.37275 2.86065 2.89836 3.11968 3.18927 3.19554 3.23353 3.27107 3.53584 3.76718 3.82500 3.98013 4.14931 4.16677 4.36487 4.64706 4.70672 4.76605 4.91413 4.94502 4.95928 5.00318 5.08186 5.08798 5.24753 5.47394 5.67386 5.69445 5.77811 5.80783 5.86439 6.03332 6.11181 6.14042 6.39224 6.45235 6.85870 6.86665 7.36527 7.49021 7.54729 8.29791 8.43334 9.18653 10.80211 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.002452 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.697957 B =11418.523367 C =13278.292977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.072 0.928 9 S -0.056 6.056 10 C -0.155 4.155 11 C 0.535 3.465 12 O -0.508 6.508 13 N -0.736 5.736 14 C 0.169 3.831 15 H 0.101 0.899 16 C 0.117 3.883 17 N -0.706 5.706 18 C 0.352 3.648 19 C 0.026 3.974 20 N -0.430 5.430 21 C 0.180 3.820 22 F -0.110 7.110 23 C 0.102 3.898 24 N -0.477 5.477 25 C -0.175 4.175 26 C -0.172 4.172 27 C -0.176 4.176 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.400 0.600 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.415 0.585 35 H 0.175 0.825 36 H 0.181 0.819 37 H 0.110 0.890 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.123 0.877 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.785 -21.228 -1.846 23.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.745 3.255 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.170 5.830 10 C -0.306 4.306 11 C 0.322 3.678 12 O -0.381 6.381 13 N -0.391 5.391 14 C 0.063 3.937 15 H 0.119 0.881 16 C -0.008 4.008 17 N -0.339 5.339 18 C 0.113 3.887 19 C -0.143 4.143 20 N -0.148 5.148 21 C 0.023 3.977 22 F -0.090 7.090 23 C -0.062 4.062 24 N -0.199 5.199 25 C -0.195 4.195 26 C -0.209 4.209 27 C -0.213 4.213 28 H 0.079 0.921 29 H 0.107 0.893 30 H 0.108 0.892 31 H 0.235 0.765 32 H 0.096 0.904 33 H 0.103 0.897 34 H 0.253 0.747 35 H 0.192 0.808 36 H 0.198 0.802 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.141 0.859 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 8.589 -21.543 -1.707 23.255 hybrid contribution 2.534 1.445 -0.205 2.924 sum 11.123 -20.098 -1.913 23.050 Atomic orbital electron populations 1.70010 1.05944 1.27526 1.46755 1.24989 0.95031 0.99051 0.94467 0.86172 0.79417 0.81554 0.78396 1.20236 1.20722 1.19696 1.22853 0.94879 0.91630 1.59109 0.90958 1.85374 1.04575 0.96316 1.96726 1.23547 1.06793 0.95312 1.04949 1.20330 0.86554 0.86231 0.74681 1.90654 1.15260 1.85348 1.46880 1.46146 1.10143 1.04930 1.77898 1.20564 0.97067 0.81005 0.95052 0.88123 1.21856 0.98701 0.98251 0.81956 1.44545 1.42566 1.30117 1.16707 1.19387 0.89678 0.90388 0.89295 1.22890 0.96524 0.93576 1.01330 1.67548 1.11791 1.30742 1.04763 1.18774 0.94907 0.93697 0.90355 1.91622 1.63319 1.79936 1.74104 1.23322 0.91670 0.90591 1.00583 1.68064 1.15026 1.31466 1.05336 1.22580 1.07023 0.97861 0.92061 1.22947 0.99499 1.00655 0.97830 1.23363 0.91541 1.03727 1.02628 0.92138 0.89263 0.89229 0.76535 0.90385 0.89716 0.74673 0.80824 0.80168 0.87203 0.89229 0.88505 0.85883 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.59 13.22 55.49 0.73 -24.86 16 2 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 3 Si 0.92 21.02 29.55 -169.99 -5.02 16.00 16 4 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 8 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 9 S -0.06 -1.45 20.57 -107.50 -2.21 -3.66 16 10 C -0.16 -2.85 6.16 36.00 0.22 -2.63 16 11 C 0.54 8.40 6.53 -10.99 -0.07 8.33 16 12 O -0.51 -9.78 12.84 5.56 0.07 -9.71 16 13 N -0.74 -7.54 3.18 -53.81 -0.17 -7.71 16 14 C 0.17 1.43 2.57 -67.94 -0.17 1.25 16 15 H 0.10 1.06 7.58 -51.93 -0.39 0.67 16 16 C 0.12 0.64 4.42 -4.04 -0.02 0.62 16 17 N -0.71 -5.23 5.57 -60.30 -0.34 -5.57 16 18 C 0.35 3.07 7.67 -154.62 -1.19 1.89 16 19 C 0.03 0.21 10.49 -17.12 -0.18 0.03 16 20 N -0.43 -4.39 10.50 -13.24 -0.14 -4.53 16 21 C 0.18 1.75 8.43 -17.22 -0.15 1.61 16 22 F -0.11 -1.09 17.29 2.25 0.04 -1.05 16 23 C 0.10 0.87 11.20 -17.30 -0.19 0.67 16 24 N -0.48 -4.75 10.53 -12.16 -0.13 -4.87 16 25 C -0.18 -1.50 5.73 -90.62 -0.52 -2.02 16 26 C -0.17 -1.75 9.69 -26.69 -0.26 -2.01 16 27 C -0.18 -2.06 9.85 -26.70 -0.26 -2.33 16 28 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 29 H 0.09 1.53 8.14 -51.91 -0.42 1.11 16 30 H 0.09 1.54 8.14 -51.91 -0.42 1.12 16 31 H 0.40 3.31 8.60 -40.82 -0.35 2.96 16 32 H 0.08 0.33 7.93 -51.93 -0.41 -0.09 16 33 H 0.08 0.34 7.95 -51.93 -0.41 -0.08 16 34 H 0.42 3.63 8.26 -40.82 -0.34 3.29 16 35 H 0.17 0.89 6.72 -52.48 -0.35 0.54 16 36 H 0.18 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.11 0.69 8.08 -51.93 -0.42 0.27 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.10 1.12 6.41 -51.93 -0.33 0.79 16 40 H 0.12 1.92 5.26 -51.92 -0.27 1.64 16 41 H 0.09 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -33.65 365.83 -9.18 -42.84 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.94 Total: 4.77 kcal Atomic # 6 Polarization: -4.55 SS G_CDS: -2.59 Total: -7.14 kcal Atomic # 7 Polarization: -47.51 SS G_CDS: -0.04 Total: -47.55 kcal Atomic # 8 Polarization: -9.78 SS G_CDS: 0.07 Total: -9.71 kcal Atomic # 9 Polarization: -1.09 SS G_CDS: 0.04 Total: -1.05 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: -1.45 SS G_CDS: -2.21 Total: -3.66 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.65 -9.18 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109763012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.052 kcal (2) G-P(sol) polarization free energy of solvation -33.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.835 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds