Wall clock time and date at job start Sat Apr 11 2020 05:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31629 * 1 3 3 Si 1.86804 * 120.00187 * 2 1 4 4 H 1.48505 * 109.47052 * 270.00242 * 3 2 1 5 5 H 1.48501 * 109.46859 * 30.00054 * 3 2 1 6 6 H 1.48492 * 109.46951 * 150.00063 * 3 2 1 7 7 C 1.38802 * 119.99766 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99835 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00320 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00255 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47209 * 180.02562 * 10 9 7 12 12 O 1.21283 * 120.00113 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00150 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00198 * 179.97438 * 13 11 10 15 15 H 1.09002 * 109.46653 * 35.00100 * 14 13 11 16 16 C 1.52997 * 109.47035 * 154.99692 * 14 13 11 17 17 N 1.46497 * 109.47371 * 305.00232 * 16 14 13 18 18 C 1.39155 * 119.99969 * 179.97438 * 17 16 14 19 19 C 1.39206 * 120.06523 * 359.73192 * 18 17 16 20 20 N 1.32005 * 119.93347 * 179.70319 * 19 18 17 21 21 C 1.32393 * 120.05640 * 0.56718 * 20 19 18 22 22 F 1.35104 * 119.93983 * 179.72679 * 21 20 19 23 23 C 1.38469 * 120.12242 * 359.70779 * 21 20 19 24 24 N 1.32211 * 120.07086 * 359.97438 * 23 21 20 25 25 C 1.52996 * 109.47477 * 275.00153 * 14 13 11 26 26 C 1.53002 * 117.49888 * 356.25271 * 25 14 13 27 27 C 1.53000 * 117.50107 * 64.91033 * 25 14 13 28 28 H 0.97005 * 120.00063 * 0.02562 * 1 2 3 29 29 H 1.09003 * 109.47363 * 59.99546 * 10 9 7 30 30 H 1.09002 * 109.46598 * 300.00140 * 10 9 7 31 31 H 0.97000 * 119.99550 * 359.97438 * 13 11 10 32 32 H 1.08995 * 109.47084 * 65.00455 * 16 14 13 33 33 H 1.09003 * 109.47102 * 185.00047 * 16 14 13 34 34 H 0.96997 * 120.00193 * 0.02562 * 17 16 14 35 35 H 1.08004 * 120.03075 * 359.97438 * 19 18 17 36 36 H 1.07999 * 119.96586 * 179.97438 * 23 21 20 37 37 H 1.09002 * 115.54951 * 210.58245 * 25 14 13 38 38 H 1.09000 * 117.49996 * 215.00804 * 26 25 14 39 39 H 1.08999 * 117.49664 * 0.02562 * 26 25 14 40 40 H 1.09008 * 117.49673 * 359.97438 * 27 25 14 41 41 H 1.08999 * 117.49959 * 144.99502 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0464 -1.4001 5 1 1.4478 2.6527 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 -0.0019 10 6 2.5158 -3.8915 -0.0013 11 6 1.9873 -5.3027 -0.0030 12 8 0.7910 -5.5023 -0.0040 13 7 2.8440 -6.3432 -0.0024 14 6 2.3303 -7.7151 -0.0035 15 1 1.4152 -7.7599 -0.5940 16 6 3.3764 -8.6509 -0.6123 17 7 3.7499 -8.1660 -1.9433 18 6 4.6931 -8.8583 -2.6967 19 6 5.2866 -10.0087 -2.1847 20 7 6.1767 -10.6666 -2.9040 21 6 6.5131 -10.2271 -4.1066 22 9 7.4284 -10.8993 -4.8386 23 6 5.9284 -9.0798 -4.6159 24 7 5.0318 -8.4205 -3.9023 25 6 2.0320 -8.1492 1.4330 26 6 2.3874 -7.1713 2.5547 27 6 0.9222 -7.4063 2.1795 28 1 -0.4850 0.8401 -0.0004 29 1 3.1238 -3.7318 0.8891 30 1 3.1250 -3.7309 -0.8908 31 1 3.8008 -6.1835 -0.0013 32 1 4.2590 -8.6741 0.0268 33 1 2.9612 -9.6554 -0.6949 34 1 3.3404 -7.3619 -2.2991 35 1 5.0159 -10.3649 -1.2017 36 1 6.2051 -8.7233 -5.5971 37 1 2.1506 -9.2134 1.6367 38 1 2.7398 -7.5921 3.4964 39 1 2.8333 -6.2185 2.2693 40 1 0.4047 -6.6080 1.6473 41 1 0.3105 -7.9818 2.8743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001109763012.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:23 Heat of formation + Delta-G solvation = -14.632926 kcal Electronic energy + Delta-G solvation = -26019.150024 eV Core-core repulsion = 21975.472362 eV Total energy + Delta-G solvation = -4043.677662 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 1.93 seconds Orbital eigenvalues (eV) -49.93568 -42.05576 -41.22069 -38.50386 -37.12058 -35.36625 -34.71123 -34.58291 -32.06437 -30.51436 -29.03898 -27.65295 -26.27423 -24.97606 -23.56366 -23.11951 -22.25430 -21.00655 -19.93180 -19.52464 -18.99242 -18.42384 -17.87503 -17.37239 -17.25074 -17.24500 -16.88589 -16.17094 -16.01344 -15.81129 -15.63937 -15.48435 -15.07493 -14.66739 -14.62424 -14.57416 -14.44278 -13.91859 -13.42421 -13.17614 -13.09008 -12.90859 -12.85379 -12.74109 -12.58387 -12.47509 -12.28143 -11.72998 -11.29196 -11.20296 -11.15163 -10.95305 -10.78254 -10.31733 -10.27335 -10.07248 -8.87396 -8.65340 -8.35822 -6.12441 -0.24344 0.02435 1.26535 1.40810 1.46077 1.56001 1.60593 1.80604 2.22767 2.28082 2.49435 2.56805 2.96061 2.98544 3.20838 3.31663 3.42277 3.51335 3.73375 3.94498 3.97148 4.10139 4.11351 4.27648 4.28033 4.31602 4.45676 4.47756 4.51725 4.62577 4.87288 4.90354 5.06899 5.21765 5.28451 5.40950 5.44995 5.49594 5.57954 6.18614 6.20374 6.24914 6.48293 6.73675 7.06173 7.26791 8.73044 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.011908 B = 0.002452 C = 0.002108 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2350.697957 B =11418.523367 C =13278.292977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.995 3.005 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.259 1.259 7 C -0.547 4.547 8 H 0.080 0.920 9 S -0.143 6.143 10 C -0.133 4.133 11 C 0.540 3.460 12 O -0.547 6.547 13 N -0.709 5.709 14 C 0.168 3.832 15 H 0.080 0.920 16 C 0.122 3.878 17 N -0.704 5.704 18 C 0.350 3.650 19 C 0.035 3.965 20 N -0.452 5.452 21 C 0.161 3.839 22 F -0.117 7.117 23 C 0.105 3.895 24 N -0.505 5.505 25 C -0.146 4.146 26 C -0.171 4.171 27 C -0.208 4.208 28 H 0.271 0.729 29 H 0.104 0.896 30 H 0.105 0.895 31 H 0.415 0.585 32 H 0.106 0.894 33 H 0.114 0.886 34 H 0.408 0.592 35 H 0.208 0.792 36 H 0.204 0.796 37 H 0.149 0.851 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.080 0.920 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.246 -22.691 -1.243 26.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.817 3.183 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.183 1.183 7 C -0.694 4.694 8 H 0.098 0.902 9 S 0.084 5.916 10 C -0.284 4.284 11 C 0.326 3.674 12 O -0.424 6.424 13 N -0.364 5.364 14 C 0.063 3.937 15 H 0.098 0.902 16 C -0.001 4.001 17 N -0.336 5.336 18 C 0.110 3.890 19 C -0.135 4.135 20 N -0.171 5.171 21 C 0.005 3.995 22 F -0.097 7.097 23 C -0.058 4.058 24 N -0.227 5.227 25 C -0.165 4.165 26 C -0.208 4.208 27 C -0.245 4.245 28 H 0.080 0.920 29 H 0.122 0.878 30 H 0.123 0.877 31 H 0.252 0.748 32 H 0.124 0.876 33 H 0.132 0.868 34 H 0.245 0.755 35 H 0.224 0.776 36 H 0.220 0.780 37 H 0.167 0.833 38 H 0.127 0.873 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.104 -23.050 -1.108 25.609 hybrid contribution 1.751 1.800 -0.358 2.537 sum 12.855 -21.250 -1.466 24.879 Atomic orbital electron populations 1.70171 1.07880 1.28559 1.48065 1.26084 0.95939 1.03219 0.93838 0.85002 0.78246 0.76296 0.78760 1.19398 1.20321 1.18280 1.23196 0.95255 0.92275 1.58714 0.90179 1.85507 1.10199 0.98919 1.97005 1.23388 1.03614 0.95089 1.06350 1.19857 0.86340 0.86289 0.74896 1.90668 1.17036 1.85685 1.49059 1.45833 1.10156 1.04712 1.75712 1.20707 0.97541 0.80048 0.95374 0.90193 1.22001 0.98816 0.98171 0.81130 1.44629 1.42080 1.29707 1.17196 1.19551 0.89718 0.90653 0.89127 1.23359 0.95335 0.92763 1.02092 1.67556 1.12715 1.31583 1.05245 1.18928 0.95545 0.94388 0.90686 1.91597 1.63637 1.80135 1.74310 1.23604 0.90935 0.89973 1.01250 1.68079 1.15941 1.32391 1.06323 1.22700 1.03340 0.99400 0.91060 1.22961 0.97769 1.00619 0.99483 1.23238 0.92646 1.04191 1.04417 0.92025 0.87761 0.87709 0.74825 0.87588 0.86844 0.75522 0.77590 0.77983 0.83325 0.87257 0.90225 0.90160 0.88363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.22 13.22 21.65 0.29 -54.93 16 2 C 0.01 0.79 5.49 84.86 0.47 1.26 16 3 Si 0.99 43.15 29.55 68.60 2.03 45.17 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.26 -10.54 7.11 99.48 0.71 -9.84 16 7 C -0.55 -30.59 9.50 67.95 0.65 -29.94 16 8 H 0.08 4.18 7.80 -2.91 -0.02 4.16 16 9 S -0.14 -7.65 20.57 -56.49 -1.16 -8.81 16 10 C -0.13 -4.87 6.16 71.23 0.44 -4.43 16 11 C 0.54 16.94 6.53 87.65 0.57 17.52 16 12 O -0.55 -21.94 12.84 -3.04 -0.04 -21.97 16 13 N -0.71 -13.24 3.18 -442.55 -1.41 -14.64 16 14 C 0.17 2.40 2.57 44.99 0.12 2.51 16 15 H 0.08 1.59 7.58 -2.39 -0.02 1.57 16 16 C 0.12 0.79 4.42 86.38 0.38 1.17 16 17 N -0.70 -8.29 5.57 -344.69 -1.92 -10.21 16 18 C 0.35 5.17 7.67 132.95 1.02 6.19 16 19 C 0.03 0.44 10.49 84.90 0.89 1.34 16 20 N -0.45 -8.34 10.50 -195.82 -2.06 -10.39 16 21 C 0.16 2.95 8.43 84.66 0.71 3.66 16 22 F -0.12 -2.26 17.29 44.97 0.78 -1.48 16 23 C 0.10 1.65 11.20 84.69 0.95 2.60 16 24 N -0.50 -9.23 10.53 -192.40 -2.03 -11.25 16 25 C -0.15 -2.03 5.73 -10.79 -0.06 -2.09 16 26 C -0.17 -3.12 9.69 30.62 0.30 -2.82 16 27 C -0.21 -4.78 9.85 30.62 0.30 -4.48 16 28 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 29 H 0.10 3.49 8.14 -2.39 -0.02 3.47 16 30 H 0.10 3.51 8.14 -2.39 -0.02 3.49 16 31 H 0.41 5.63 8.60 -92.71 -0.80 4.83 16 32 H 0.11 0.23 7.93 -2.39 -0.02 0.21 16 33 H 0.11 0.24 7.95 -2.39 -0.02 0.22 16 34 H 0.41 6.27 8.26 -92.71 -0.77 5.50 16 35 H 0.21 1.05 6.72 -2.91 -0.02 1.04 16 36 H 0.20 1.97 8.06 -2.91 -0.02 1.94 16 37 H 0.15 1.03 8.08 -2.39 -0.02 1.01 16 38 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.08 1.73 6.41 -2.39 -0.02 1.71 16 40 H 0.08 2.64 5.26 -2.38 -0.01 2.62 16 41 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 Total: -1.00 -78.40 365.83 0.75 -77.65 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -0.46 Total: 18.39 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: 6.73 Total: -7.52 kcal Atomic # 7 Polarization: -94.31 SS G_CDS: -7.12 Total: -101.43 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.04 Total: -21.97 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.78 Total: -1.48 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.17 kcal Atomic # 16 Polarization: -7.65 SS G_CDS: -1.16 Total: -8.81 kcal Total: -78.40 0.75 -77.65 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001109763012.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.016 kcal (2) G-P(sol) polarization free energy of solvation -78.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.753 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.93 seconds