Wall clock time and date at job start Sat Apr 11 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48504 * 109.46846 * 269.99779 * 3 2 1 5 5 H 1.48495 * 109.47296 * 29.99351 * 3 2 1 6 6 H 1.48496 * 109.47343 * 149.99875 * 3 2 1 7 7 C 1.38802 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00462 * 180.02562 * 7 2 1 9 9 S 1.76209 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.80994 * 99.99764 * 179.97438 * 9 7 2 11 11 C 1.50710 * 109.46968 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99523 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99858 * 179.97438 * 11 10 9 14 14 C 1.47424 * 125.64830 * 4.88445 * 13 11 10 15 15 C 1.54914 * 104.82956 * 204.15909 * 14 13 11 16 16 C 1.55399 * 101.66840 * 323.08040 * 15 14 13 17 17 C 1.47027 * 125.64479 * 184.92315 * 13 11 10 18 18 H 1.08994 * 109.88206 * 59.33602 * 17 13 11 19 19 C 1.52997 * 109.88029 * 298.32325 * 17 13 11 20 20 N 1.46499 * 109.46658 * 174.70627 * 19 17 13 21 21 C 1.38539 * 119.99982 * 184.96977 * 20 19 17 22 22 N 1.32459 * 119.18935 * 359.72736 * 21 20 19 23 23 C 1.32295 * 120.76655 * 179.75631 * 22 21 20 24 24 C 1.38783 * 119.16629 * 0.51012 * 23 22 21 25 25 F 1.35101 * 120.74359 * 179.76585 * 24 23 22 26 26 C 1.38775 * 118.51178 * 359.74477 * 24 23 22 27 27 N 1.32304 * 119.16917 * 359.97438 * 26 24 23 28 28 H 0.97000 * 120.00083 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47514 * 59.99877 * 10 9 7 30 30 H 1.09003 * 109.47284 * 299.99945 * 10 9 7 31 31 H 1.08999 * 110.37161 * 322.99891 * 14 13 11 32 32 H 1.08996 * 110.36709 * 85.21696 * 14 13 11 33 33 H 1.09002 * 110.99793 * 81.06663 * 15 14 13 34 34 H 1.08994 * 111.00515 * 204.87214 * 15 14 13 35 35 H 1.09008 * 110.69025 * 277.04573 * 16 15 14 36 36 H 1.08996 * 110.85341 * 153.69732 * 16 15 14 37 37 H 1.08998 * 109.47493 * 294.69979 * 19 17 13 38 38 H 1.08997 * 109.47388 * 54.70672 * 19 17 13 39 39 H 0.97000 * 120.00331 * 4.96406 * 20 19 17 40 40 H 1.07999 * 120.41836 * 180.23160 * 23 22 21 41 41 H 1.08002 * 120.42045 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7281 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 4.3116 -6.2476 0.1017 15 6 4.8395 -7.5504 -0.5495 16 6 3.7747 -8.5850 -0.0906 17 6 2.4697 -7.7614 -0.1012 18 1 1.9287 -7.9360 -1.0312 19 6 1.5956 -8.1558 1.0909 20 7 1.1242 -9.5319 0.9165 21 6 0.2289 -10.0774 1.8222 22 7 -0.1861 -9.3422 2.8429 23 6 -1.0443 -9.8302 3.7235 24 6 -1.5010 -11.1321 3.5733 25 9 -2.3740 -11.6641 4.4565 26 6 -1.0411 -11.8751 2.4952 27 7 -0.1872 -11.3228 1.6488 28 1 -0.4850 0.8400 -0.0004 29 1 3.1244 -3.7314 0.8905 30 1 3.1243 -3.7314 -0.8895 31 1 4.6736 -5.3767 -0.4447 32 1 4.6173 -6.1931 1.1465 33 1 4.8557 -7.4652 -1.6360 34 1 5.8266 -7.8071 -0.1652 35 1 3.9954 -8.9448 0.9144 36 1 3.7123 -9.4155 -0.7937 37 1 2.1794 -8.0854 2.0086 38 1 0.7398 -7.4836 1.1522 39 1 1.4389 -10.0611 0.1670 40 1 -1.3819 -9.2246 4.5516 41 1 -1.3759 -12.8914 2.3488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110531094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:07 Heat of formation + Delta-G solvation = -15.570127 kcal Electronic energy + Delta-G solvation = -26061.672197 eV Core-core repulsion = 22017.953895 eV Total energy + Delta-G solvation = -4043.718302 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.09627 -41.17873 -40.12260 -37.48645 -35.96625 -34.08742 -32.44643 -32.03984 -31.36931 -29.54660 -28.45460 -25.87642 -25.50546 -24.96762 -23.33906 -22.69445 -21.27420 -19.47149 -18.51615 -18.17481 -17.69239 -17.60804 -16.89565 -16.40860 -16.27718 -15.37258 -15.12390 -14.84213 -14.81487 -14.76359 -14.47265 -14.28020 -13.99730 -13.83699 -13.38030 -13.32178 -13.05946 -12.78630 -12.57201 -12.31627 -11.99342 -11.82107 -11.51035 -11.30668 -11.24565 -11.08105 -11.04945 -11.03735 -10.77678 -10.38607 -9.83424 -9.45666 -9.39107 -9.08140 -8.65076 -8.25644 -8.24766 -6.52121 -6.23086 -3.93976 0.70422 0.70879 2.37569 2.93000 2.99644 3.21202 3.25024 3.29320 3.47461 3.57717 3.71115 3.80696 4.16893 4.21907 4.27168 4.32481 4.53357 4.54502 4.66088 4.84026 5.00477 5.04196 5.11425 5.12155 5.29662 5.39986 5.45190 5.52011 5.54733 5.61495 5.76866 5.83318 5.88983 5.90334 6.01336 6.10540 6.30476 6.43304 6.71380 7.08614 7.56416 7.58534 7.94671 8.33602 8.47671 9.22160 10.84329 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.002407 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.048238 B =11629.473740 C =13358.297410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.147 4.147 11 C 0.549 3.451 12 O -0.508 6.508 13 N -0.620 5.620 14 C 0.100 3.900 15 C -0.132 4.132 16 C -0.131 4.131 17 C 0.129 3.871 18 H 0.081 0.919 19 C 0.121 3.879 20 N -0.686 5.686 21 C 0.561 3.439 22 N -0.537 5.537 23 C 0.178 3.822 24 C -0.080 4.080 25 F -0.129 7.129 26 C 0.173 3.827 27 N -0.550 5.550 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.082 0.918 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.414 0.586 40 H 0.179 0.821 41 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.273 -23.997 3.364 25.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.167 5.833 10 C -0.297 4.297 11 C 0.338 3.662 12 O -0.382 6.382 13 N -0.358 5.358 14 C -0.023 4.023 15 C -0.170 4.170 16 C -0.169 4.169 17 C 0.024 3.976 18 H 0.099 0.901 19 C -0.004 4.004 20 N -0.323 5.323 21 C 0.204 3.796 22 N -0.259 5.259 23 C 0.008 3.992 24 C -0.108 4.108 25 F -0.108 7.108 26 C 0.004 3.996 27 N -0.272 5.272 28 H 0.078 0.922 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.086 0.914 38 H 0.113 0.887 39 H 0.251 0.749 40 H 0.196 0.804 41 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.996 -23.468 2.726 24.375 hybrid contribution 1.326 0.630 0.490 1.548 sum 7.323 -22.838 3.217 24.198 Atomic orbital electron populations 1.70014 1.05956 1.27484 1.46779 1.24993 0.95029 0.99035 0.94526 0.86166 0.79411 0.81565 0.78346 1.20272 1.20740 1.19688 1.22850 0.94875 0.91579 1.59033 0.90926 1.85427 1.04801 0.96343 1.96715 1.23514 1.06568 0.94778 1.04843 1.20111 0.85707 0.85458 0.74958 1.90716 1.14894 1.84961 1.47609 1.48495 1.07137 1.04553 1.75573 1.22332 0.79975 0.99001 1.01007 1.22812 0.98649 0.94137 1.01369 1.22825 0.93602 0.97725 1.02727 1.21611 0.95681 0.82171 0.98113 0.90128 1.21851 0.99773 0.80965 0.97763 1.44016 1.45560 1.14977 1.27707 1.19342 0.87925 0.85149 0.87178 1.68064 1.15863 1.37116 1.04855 1.23193 0.89062 0.91070 0.95870 1.19115 1.00293 0.96330 0.95078 1.91508 1.66645 1.86086 1.66581 1.23051 0.89524 0.99885 0.87166 1.67938 1.16584 1.11792 1.30894 0.92159 0.89241 0.89221 0.89974 0.91209 0.90367 0.89718 0.90204 0.89911 0.91357 0.88739 0.74890 0.80390 0.80560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 7 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.92 5.09 36.01 0.18 -2.74 16 11 C 0.55 10.16 7.68 -10.98 -0.08 10.07 16 12 O -0.51 -11.33 14.66 5.56 0.08 -11.25 16 13 N -0.62 -8.28 3.06 -163.02 -0.50 -8.78 16 14 C 0.10 0.96 6.74 -2.53 -0.02 0.95 16 15 C -0.13 -0.90 7.09 -24.45 -0.17 -1.07 16 16 C -0.13 -0.92 6.12 -24.77 -0.15 -1.07 16 17 C 0.13 1.40 2.97 -66.95 -0.20 1.21 16 18 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 19 C 0.12 1.49 5.05 -4.04 -0.02 1.47 16 20 N -0.69 -7.38 5.57 -62.29 -0.35 -7.73 16 21 C 0.56 6.87 8.43 -322.71 -2.72 4.15 16 22 N -0.54 -6.93 9.58 -13.86 -0.13 -7.06 16 23 C 0.18 1.85 11.29 -17.15 -0.19 1.65 16 24 C -0.08 -0.76 7.38 -39.18 -0.29 -1.05 16 25 F -0.13 -1.21 17.30 2.25 0.04 -1.18 16 26 C 0.17 1.56 11.29 -17.15 -0.19 1.37 16 27 N -0.55 -6.07 10.46 -13.86 -0.14 -6.21 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 30 H 0.09 1.66 7.95 -51.91 -0.41 1.24 16 31 H 0.08 0.78 7.47 -51.93 -0.39 0.40 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.08 0.54 7.77 -51.92 -0.40 0.14 16 36 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.84 8.02 -51.93 -0.42 0.42 16 38 H 0.09 1.56 6.54 -51.93 -0.34 1.22 16 39 H 0.41 3.55 8.38 -40.82 -0.34 3.20 16 40 H 0.18 1.38 8.06 -52.49 -0.42 0.95 16 41 H 0.18 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 366.62 15.07 5.52 5.52 Total: -1.00 -35.34 366.62 -10.87 -46.21 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.23 Total: 1.29 kcal Atomic # 6 Polarization: 5.76 SS G_CDS: -3.66 Total: 2.10 kcal Atomic # 7 Polarization: -54.73 SS G_CDS: -0.39 Total: -55.12 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 9 Polarization: -1.21 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -35.34 -10.87 -46.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110531094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.640 kcal (2) G-P(sol) polarization free energy of solvation -35.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.211 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds