Wall clock time and date at job start Sat Apr 11 2020 05:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86797 * 120.00138 * 2 1 4 4 H 1.48504 * 109.46846 * 269.99779 * 3 2 1 5 5 H 1.48495 * 109.47296 * 29.99351 * 3 2 1 6 6 H 1.48496 * 109.47343 * 149.99875 * 3 2 1 7 7 C 1.38802 * 120.00048 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00462 * 180.02562 * 7 2 1 9 9 S 1.76209 * 119.99850 * 0.02562 * 7 2 1 10 10 C 1.80994 * 99.99764 * 179.97438 * 9 7 2 11 11 C 1.50710 * 109.46968 * 179.97438 * 10 9 7 12 12 O 1.21274 * 119.99523 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99858 * 179.97438 * 11 10 9 14 14 C 1.47424 * 125.64830 * 4.88445 * 13 11 10 15 15 C 1.54914 * 104.82956 * 204.15909 * 14 13 11 16 16 C 1.55399 * 101.66840 * 323.08040 * 15 14 13 17 17 C 1.47027 * 125.64479 * 184.92315 * 13 11 10 18 18 H 1.08994 * 109.88206 * 59.33602 * 17 13 11 19 19 C 1.52997 * 109.88029 * 298.32325 * 17 13 11 20 20 N 1.46499 * 109.46658 * 174.70627 * 19 17 13 21 21 C 1.38539 * 119.99982 * 184.96977 * 20 19 17 22 22 N 1.32459 * 119.18935 * 359.72736 * 21 20 19 23 23 C 1.32295 * 120.76655 * 179.75631 * 22 21 20 24 24 C 1.38783 * 119.16629 * 0.51012 * 23 22 21 25 25 F 1.35101 * 120.74359 * 179.76585 * 24 23 22 26 26 C 1.38775 * 118.51178 * 359.74477 * 24 23 22 27 27 N 1.32304 * 119.16917 * 359.97438 * 26 24 23 28 28 H 0.97000 * 120.00083 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47514 * 59.99877 * 10 9 7 30 30 H 1.09003 * 109.47284 * 299.99945 * 10 9 7 31 31 H 1.08999 * 110.37161 * 322.99891 * 14 13 11 32 32 H 1.08996 * 110.36709 * 85.21696 * 14 13 11 33 33 H 1.09002 * 110.99793 * 81.06663 * 15 14 13 34 34 H 1.08994 * 111.00515 * 204.87214 * 15 14 13 35 35 H 1.09008 * 110.69025 * 277.04573 * 16 15 14 36 36 H 1.08996 * 110.85341 * 153.69732 * 16 15 14 37 37 H 1.08998 * 109.47493 * 294.69979 * 19 17 13 38 38 H 1.08997 * 109.47388 * 54.70672 * 19 17 13 39 39 H 0.97000 * 120.00331 * 4.96406 * 20 19 17 40 40 H 1.07999 * 120.41836 * 180.23160 * 23 22 21 41 41 H 1.08002 * 120.42045 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 16 1.1292 -2.7281 0.0005 10 6 2.5157 -3.8914 0.0005 11 6 1.9872 -5.3028 0.0012 12 8 0.7910 -5.5023 0.0011 13 7 2.8440 -6.3432 0.0008 14 6 4.3116 -6.2476 0.1017 15 6 4.8395 -7.5504 -0.5495 16 6 3.7747 -8.5850 -0.0906 17 6 2.4697 -7.7614 -0.1012 18 1 1.9287 -7.9360 -1.0312 19 6 1.5956 -8.1558 1.0909 20 7 1.1242 -9.5319 0.9165 21 6 0.2289 -10.0774 1.8222 22 7 -0.1861 -9.3422 2.8429 23 6 -1.0443 -9.8302 3.7235 24 6 -1.5010 -11.1321 3.5733 25 9 -2.3740 -11.6641 4.4565 26 6 -1.0411 -11.8751 2.4952 27 7 -0.1872 -11.3228 1.6488 28 1 -0.4850 0.8400 -0.0004 29 1 3.1244 -3.7314 0.8905 30 1 3.1243 -3.7314 -0.8895 31 1 4.6736 -5.3767 -0.4447 32 1 4.6173 -6.1931 1.1465 33 1 4.8557 -7.4652 -1.6360 34 1 5.8266 -7.8071 -0.1652 35 1 3.9954 -8.9448 0.9144 36 1 3.7123 -9.4155 -0.7937 37 1 2.1794 -8.0854 2.0086 38 1 0.7398 -7.4836 1.1522 39 1 1.4389 -10.0611 0.1670 40 1 -1.3819 -9.2246 4.5516 41 1 -1.3759 -12.8914 2.3488 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110531094.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:07 Heat of formation + Delta-G solvation = -38.278131 kcal Electronic energy + Delta-G solvation = -26062.656890 eV Core-core repulsion = 22017.953895 eV Total energy + Delta-G solvation = -4044.702995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.86673 -42.01767 -41.24285 -38.71216 -36.86262 -34.92040 -34.59550 -33.15061 -32.19527 -30.67558 -29.60016 -27.67222 -26.71791 -25.78870 -24.25950 -23.63149 -22.05369 -20.62368 -19.77350 -19.27433 -18.98375 -18.43494 -18.10546 -17.47108 -17.09054 -16.88990 -16.52301 -16.22028 -15.96854 -15.82808 -15.55027 -15.29260 -15.05052 -14.95336 -14.55346 -14.11992 -14.08023 -14.03564 -13.77413 -13.54528 -13.17366 -13.03062 -12.89233 -12.83202 -12.62314 -12.14018 -12.11408 -12.03699 -11.73269 -11.64819 -11.29960 -11.14954 -10.89938 -10.28561 -10.24068 -9.78174 -9.10872 -8.68682 -8.35360 -6.13979 -0.12405 -0.06537 1.19715 1.40253 1.42213 1.50179 1.54929 1.67823 2.17429 2.26807 2.63468 2.93246 2.98867 3.02993 3.22605 3.47445 3.53660 3.60314 3.78362 3.79240 3.87279 3.91814 4.08621 4.20044 4.27342 4.40583 4.45387 4.58987 4.64390 4.75699 4.82820 4.93015 5.00260 5.11216 5.19403 5.33730 5.38853 5.40905 5.52492 5.90557 6.18985 6.27838 6.35439 7.05731 7.08357 7.13454 8.73930 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.013426 B = 0.002407 C = 0.002096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2085.048238 B =11629.473740 C =13358.297410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.257 1.257 7 C -0.544 4.544 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.119 4.119 11 C 0.546 3.454 12 O -0.559 6.559 13 N -0.611 5.611 14 C 0.086 3.914 15 C -0.119 4.119 16 C -0.118 4.118 17 C 0.126 3.874 18 H 0.073 0.927 19 C 0.138 3.862 20 N -0.679 5.679 21 C 0.544 3.456 22 N -0.572 5.572 23 C 0.167 3.833 24 C -0.077 4.077 25 F -0.126 7.126 26 C 0.178 3.822 27 N -0.556 5.556 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.066 0.934 38 H 0.046 0.954 39 H 0.424 0.576 40 H 0.196 0.804 41 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.213 -25.565 3.245 27.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.821 3.179 4 H -0.192 1.192 5 H -0.204 1.204 6 H -0.181 1.181 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.075 5.925 10 C -0.270 4.270 11 C 0.334 3.666 12 O -0.436 6.436 13 N -0.346 5.346 14 C -0.036 4.036 15 C -0.157 4.157 16 C -0.156 4.156 17 C 0.022 3.978 18 H 0.091 0.909 19 C 0.012 3.988 20 N -0.317 5.317 21 C 0.188 3.812 22 N -0.295 5.295 23 C -0.001 4.001 24 C -0.104 4.104 25 F -0.105 7.105 26 C 0.009 3.991 27 N -0.278 5.278 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.132 0.868 35 H 0.107 0.893 36 H 0.127 0.873 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.264 0.736 40 H 0.213 0.787 41 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 8.987 -25.094 2.610 26.783 hybrid contribution 0.399 0.943 0.575 1.174 sum 9.386 -24.151 3.185 26.106 Atomic orbital electron populations 1.70186 1.08026 1.28621 1.48008 1.26148 0.95970 1.03380 0.93729 0.84939 0.78215 0.75918 0.78825 1.19249 1.20364 1.18073 1.23185 0.95322 0.91835 1.58872 0.89844 1.85622 1.10529 0.99324 1.97031 1.23304 1.03389 0.93934 1.06378 1.19823 0.85511 0.86000 0.75239 1.90701 1.17032 1.85605 1.50311 1.48429 1.08500 1.04593 1.73072 1.22735 0.77279 1.01163 1.02388 1.22824 0.99597 0.91762 1.01522 1.22833 0.90812 0.97745 1.04160 1.21826 0.97838 0.81159 0.96985 0.90863 1.21494 0.97975 0.80958 0.98386 1.43855 1.45530 1.14311 1.27969 1.19586 0.88429 0.85781 0.87455 1.68063 1.17286 1.38195 1.05912 1.23540 0.88674 0.91916 0.95965 1.19107 1.00059 0.96038 0.95218 1.91518 1.66528 1.85964 1.66539 1.23659 0.88248 1.01088 0.86132 1.68022 1.17189 1.11168 1.31383 0.92000 0.87617 0.87423 0.89672 0.89943 0.89904 0.86772 0.89313 0.87279 0.91560 0.93592 0.73619 0.78682 0.76954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.40 13.22 21.65 0.29 -56.12 16 2 C 0.01 0.71 5.49 84.86 0.47 1.17 16 3 Si 1.00 43.57 29.55 68.60 2.03 45.60 16 4 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 5 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.45 7.11 99.48 0.71 -9.75 16 7 C -0.54 -31.14 9.50 67.95 0.65 -30.49 16 8 H 0.08 4.41 7.80 -2.91 -0.02 4.39 16 9 S -0.15 -8.55 20.57 -56.49 -1.16 -9.72 16 10 C -0.12 -4.79 5.09 71.24 0.36 -4.43 16 11 C 0.55 20.74 7.68 87.66 0.67 21.41 16 12 O -0.56 -26.46 14.66 -3.01 -0.04 -26.50 16 13 N -0.61 -15.93 3.06 -788.05 -2.41 -18.35 16 14 C 0.09 1.43 6.74 86.86 0.59 2.02 16 15 C -0.12 -1.14 7.09 32.07 0.23 -0.92 16 16 C -0.12 -1.26 6.12 31.87 0.20 -1.07 16 17 C 0.13 2.64 2.97 45.34 0.13 2.77 16 18 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 19 C 0.14 3.45 5.05 86.38 0.44 3.89 16 20 N -0.68 -14.51 5.57 -350.99 -1.95 -16.47 16 21 C 0.54 13.35 8.43 261.45 2.20 15.55 16 22 N -0.57 -15.19 9.58 -197.78 -1.89 -17.09 16 23 C 0.17 3.50 11.29 84.75 0.96 4.45 16 24 C -0.08 -1.38 7.38 22.53 0.17 -1.22 16 25 F -0.13 -2.21 17.30 44.97 0.78 -1.43 16 26 C 0.18 2.91 11.29 84.75 0.96 3.86 16 27 N -0.56 -11.68 10.46 -197.78 -2.07 -13.75 16 28 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.11 3.88 8.14 -2.40 -0.02 3.86 16 30 H 0.11 3.91 7.95 -2.39 -0.02 3.89 16 31 H 0.08 1.40 7.47 -2.39 -0.02 1.38 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.09 0.87 7.77 -2.38 -0.02 0.86 16 36 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.07 1.65 8.02 -2.39 -0.02 1.63 16 38 H 0.05 1.64 6.54 -2.39 -0.02 1.62 16 39 H 0.42 6.84 8.38 -92.71 -0.78 6.06 16 40 H 0.20 3.07 8.06 -2.91 -0.02 3.04 16 41 H 0.21 1.74 8.06 -2.91 -0.02 1.72 16 Total: -1.00 -81.99 366.62 1.86 -80.12 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: 0.30 Total: 16.69 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 8.01 Total: 17.00 kcal Atomic # 7 Polarization: -113.72 SS G_CDS: -8.04 Total: -121.77 kcal Atomic # 8 Polarization: -26.46 SS G_CDS: -0.04 Total: -26.50 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Atomic # 16 Polarization: -8.55 SS G_CDS: -1.16 Total: -9.72 kcal Total: -81.99 1.86 -80.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110531094.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.845 kcal (2) G-P(sol) polarization free energy of solvation -81.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds