Wall clock time and date at job start Sat Apr 11 2020 05:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47094 * 240.00156 * 3 2 1 5 5 H 1.48497 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47187 * 120.00154 * 3 2 1 7 7 C 1.38797 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99342 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00223 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00117 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47220 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00166 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00033 * 180.02562 * 11 10 9 14 14 C 1.47430 * 125.64796 * 4.97145 * 13 11 10 15 15 C 1.54912 * 104.83277 * 204.09351 * 14 13 11 16 16 C 1.55152 * 101.57811 * 322.98862 * 15 14 13 17 17 C 1.47017 * 125.65331 * 184.92559 * 13 11 10 18 18 H 1.09010 * 109.87865 * 59.40173 * 17 13 11 19 19 C 1.53002 * 109.88192 * 298.39692 * 17 13 11 20 20 N 1.46505 * 109.47062 * 175.31163 * 19 17 13 21 21 C 1.39113 * 119.99579 * 174.95802 * 20 19 17 22 22 N 1.32563 * 120.11689 * 359.97438 * 21 20 19 23 23 C 1.32305 * 119.94732 * 179.75374 * 22 21 20 24 24 C 1.38059 * 120.16481 * 0.52567 * 23 22 21 25 25 N 1.32344 * 120.22239 * 359.47418 * 24 23 22 26 26 C 1.32075 * 120.05685 * 0.25498 * 25 24 23 27 27 F 1.35101 * 120.08851 * 179.97438 * 26 25 24 28 28 H 0.97005 * 120.00086 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.46927 * 59.99622 * 10 9 7 30 30 H 1.08999 * 109.46916 * 300.00418 * 10 9 7 31 31 H 1.09006 * 110.36519 * 322.92679 * 14 13 11 32 32 H 1.08993 * 110.36686 * 85.25031 * 14 13 11 33 33 H 1.09002 * 111.00503 * 81.06178 * 15 14 13 34 34 H 1.08997 * 111.00439 * 204.91586 * 15 14 13 35 35 H 1.09005 * 110.72035 * 277.13634 * 16 15 14 36 36 H 1.08998 * 110.72053 * 153.86569 * 16 15 14 37 37 H 1.09000 * 109.47039 * 55.31577 * 19 17 13 38 38 H 1.08996 * 109.47197 * 295.31228 * 19 17 13 39 39 H 0.96997 * 120.00133 * 354.96058 * 20 19 17 40 40 H 1.08001 * 119.92013 * 180.25283 * 23 22 21 41 41 H 1.07998 * 119.89231 * 179.75577 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0019 10 6 2.5159 -3.8914 0.0013 11 6 1.9874 -5.3027 0.0018 12 8 0.7912 -5.5023 0.0028 13 7 2.8441 -6.3431 0.0020 14 6 4.3117 -6.2477 0.1057 15 6 4.8407 -7.5506 -0.5442 16 6 3.7767 -8.5821 -0.0846 17 6 2.4701 -7.7612 -0.1002 18 1 1.9307 -7.9361 -1.0312 19 6 1.5937 -8.1553 1.0904 20 7 1.1344 -9.5363 0.9228 21 6 0.4060 -10.1546 1.9340 22 7 0.1265 -9.4964 3.0502 23 6 -0.5707 -10.0860 4.0077 24 6 -0.9990 -11.3892 3.8519 25 7 -0.7238 -12.0525 2.7403 26 6 -0.0330 -11.4707 1.7766 27 9 0.2488 -12.1474 0.6418 28 1 -0.4850 0.8401 0.0004 29 1 3.1251 -3.7309 0.8907 30 1 3.1238 -3.7317 -0.8891 31 1 4.6747 -5.3769 -0.4404 32 1 4.6154 -6.1946 1.1511 33 1 4.8589 -7.4658 -1.6307 34 1 5.8268 -7.8076 -0.1573 35 1 3.9956 -8.9396 0.9217 36 1 3.7179 -9.4141 -0.7862 37 1 0.7320 -7.4898 1.1433 38 1 2.1726 -8.0740 2.0104 39 1 1.3383 -10.0196 0.1069 40 1 -0.8016 -9.5480 4.9152 41 1 -1.5645 -11.8675 4.6380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110531161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:10 Heat of formation + Delta-G solvation = -15.807074 kcal Electronic energy + Delta-G solvation = -26317.066344 eV Core-core repulsion = 22273.337767 eV Total energy + Delta-G solvation = -4043.728577 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.27783 -41.19344 -40.15960 -37.56165 -36.39524 -34.04562 -32.45152 -32.03810 -31.39241 -29.53046 -28.48055 -26.06363 -25.51414 -24.51749 -23.63533 -22.69878 -21.28397 -19.55128 -18.57943 -18.27277 -17.90611 -17.58572 -16.88304 -16.64960 -16.40608 -15.47451 -14.98530 -14.94892 -14.82298 -14.69272 -14.42452 -14.25849 -14.00269 -13.93319 -13.54793 -13.41929 -13.09899 -12.79731 -12.57995 -12.33414 -11.94549 -11.91889 -11.70099 -11.51202 -11.19115 -11.07335 -11.06368 -11.04877 -10.78975 -10.37758 -9.85133 -9.57374 -9.43719 -9.08086 -8.66403 -8.26919 -8.13559 -6.53109 -6.23653 -3.94779 0.48116 0.84361 2.41122 2.90801 2.97168 3.18197 3.21784 3.25315 3.27941 3.33730 3.56578 3.88637 4.01297 4.16344 4.21418 4.27182 4.51557 4.73430 4.82731 4.87404 4.98525 5.03088 5.10881 5.11424 5.18077 5.38154 5.42982 5.50775 5.53753 5.60413 5.72186 5.80460 5.83964 5.87922 5.97196 6.09402 6.33722 6.56097 6.63685 7.08349 7.53727 7.55607 7.57477 8.32658 8.45996 9.21415 10.83680 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.002408 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.240908 B =11626.973048 C =12843.309539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.059 6.059 10 C -0.147 4.147 11 C 0.549 3.451 12 O -0.509 6.509 13 N -0.620 5.620 14 C 0.100 3.900 15 C -0.132 4.132 16 C -0.130 4.130 17 C 0.129 3.871 18 H 0.080 0.920 19 C 0.117 3.883 20 N -0.702 5.702 21 C 0.358 3.642 22 N -0.475 5.475 23 C 0.102 3.898 24 C 0.006 3.994 25 N -0.432 5.432 26 C 0.191 3.809 27 F -0.110 7.110 28 H 0.269 0.731 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.084 0.916 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.413 0.587 40 H 0.179 0.821 41 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.867 -22.803 4.340 24.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.684 4.684 8 H 0.090 0.910 9 S 0.168 5.832 10 C -0.297 4.297 11 C 0.338 3.662 12 O -0.383 6.383 13 N -0.358 5.358 14 C -0.023 4.023 15 C -0.170 4.170 16 C -0.168 4.168 17 C 0.024 3.976 18 H 0.098 0.902 19 C -0.008 4.008 20 N -0.334 5.334 21 C 0.115 3.885 22 N -0.199 5.199 23 C -0.059 4.059 24 C -0.154 4.154 25 N -0.150 5.150 26 C 0.025 3.975 27 F -0.090 7.090 28 H 0.079 0.921 29 H 0.108 0.892 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.103 0.897 35 H 0.098 0.902 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.091 0.909 39 H 0.250 0.750 40 H 0.196 0.804 41 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 5.938 -22.688 4.316 23.846 hybrid contribution 2.077 0.932 -0.491 2.329 sum 8.015 -21.756 3.825 23.499 Atomic orbital electron populations 1.70011 1.05952 1.27603 1.46689 1.24993 0.95032 0.99027 0.94505 0.86222 0.79239 0.81225 0.78802 1.19939 1.20798 1.19916 1.22808 0.94846 0.91596 1.59168 0.90976 1.85416 1.04783 0.96320 1.96724 1.23511 1.06583 0.94771 1.04848 1.20110 0.85702 0.85466 0.74931 1.90712 1.14907 1.84972 1.47672 1.48499 1.07160 1.04560 1.75536 1.22335 0.79968 0.99008 1.00993 1.22777 0.98664 0.94173 1.01382 1.22767 0.93580 0.97746 1.02700 1.21622 0.95708 0.82189 0.98098 0.90192 1.21866 0.99753 0.81047 0.98119 1.44460 1.56711 1.14981 1.17281 1.19064 0.91666 0.87793 0.89981 1.68180 1.16077 1.35477 1.00126 1.23607 0.91620 0.93263 0.97376 1.23177 1.03460 0.93569 0.95234 1.67571 1.09360 1.37487 1.00615 1.18367 1.04095 0.88490 0.86525 1.91600 1.91416 1.80262 1.45676 0.92099 0.89235 0.89220 0.89955 0.91216 0.90343 0.89717 0.90244 0.89990 0.89197 0.90906 0.74958 0.80424 0.80712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.01 13.22 55.49 0.73 -25.27 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.20 29.55 -169.99 -5.02 16.18 16 4 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.54 -15.09 9.50 30.94 0.29 -14.80 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 10 C -0.15 -2.92 5.09 36.00 0.18 -2.73 16 11 C 0.55 10.12 7.68 -10.99 -0.08 10.03 16 12 O -0.51 -11.28 14.66 5.56 0.08 -11.20 16 13 N -0.62 -8.26 3.06 -163.02 -0.50 -8.76 16 14 C 0.10 0.97 6.74 -2.52 -0.02 0.95 16 15 C -0.13 -0.91 7.09 -24.58 -0.17 -1.08 16 16 C -0.13 -0.93 6.21 -24.90 -0.15 -1.09 16 17 C 0.13 1.40 2.95 -66.96 -0.20 1.20 16 18 H 0.08 0.91 8.14 -51.92 -0.42 0.49 16 19 C 0.12 1.41 5.11 -4.04 -0.02 1.39 16 20 N -0.70 -7.30 5.52 -60.21 -0.33 -7.63 16 21 C 0.36 4.16 7.50 -154.59 -1.16 3.00 16 22 N -0.48 -5.65 9.73 -12.17 -0.12 -5.77 16 23 C 0.10 0.88 11.21 -17.41 -0.20 0.68 16 24 C 0.01 0.05 11.21 -17.40 -0.19 -0.15 16 25 N -0.43 -4.88 10.50 -13.24 -0.14 -5.02 16 26 C 0.19 2.22 8.47 -16.93 -0.14 2.07 16 27 F -0.11 -1.23 16.68 2.25 0.04 -1.19 16 28 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.09 1.65 8.14 -51.92 -0.42 1.23 16 30 H 0.09 1.65 7.95 -51.92 -0.41 1.24 16 31 H 0.08 0.79 7.48 -51.93 -0.39 0.40 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.56 7.77 -51.93 -0.40 0.15 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.09 1.46 6.56 -51.93 -0.34 1.12 16 38 H 0.07 0.90 8.03 -51.93 -0.42 0.48 16 39 H 0.41 3.45 7.89 -40.82 -0.32 3.13 16 40 H 0.18 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.18 0.81 8.06 -52.49 -0.42 0.39 16 LS Contribution 365.82 15.07 5.51 5.51 Total: -1.00 -35.72 365.82 -9.13 -44.85 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -5.21 Total: 0.63 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.96 Total: 1.47 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.36 Total: -52.46 kcal Atomic # 8 Polarization: -11.28 SS G_CDS: 0.08 Total: -11.20 kcal Atomic # 9 Polarization: -1.23 SS G_CDS: 0.04 Total: -1.19 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -35.72 -9.13 -44.85 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110531161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.044 kcal (2) G-P(sol) polarization free energy of solvation -35.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds