Wall clock time and date at job start Sat Apr 11 2020 05:55:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31638 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48507 * 109.47094 * 240.00156 * 3 2 1 5 5 H 1.48497 * 109.47131 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47187 * 120.00154 * 3 2 1 7 7 C 1.38797 * 119.99729 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99342 * 179.97438 * 7 2 1 9 9 S 1.76193 * 120.00223 * 359.97438 * 7 2 1 10 10 C 1.81005 * 100.00117 * 179.97438 * 9 7 2 11 11 C 1.50698 * 109.47220 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00166 * 359.97438 * 11 10 9 13 13 N 1.34774 * 120.00033 * 180.02562 * 11 10 9 14 14 C 1.47430 * 125.64796 * 4.97145 * 13 11 10 15 15 C 1.54912 * 104.83277 * 204.09351 * 14 13 11 16 16 C 1.55152 * 101.57811 * 322.98862 * 15 14 13 17 17 C 1.47017 * 125.65331 * 184.92559 * 13 11 10 18 18 H 1.09010 * 109.87865 * 59.40173 * 17 13 11 19 19 C 1.53002 * 109.88192 * 298.39692 * 17 13 11 20 20 N 1.46505 * 109.47062 * 175.31163 * 19 17 13 21 21 C 1.39113 * 119.99579 * 174.95802 * 20 19 17 22 22 N 1.32563 * 120.11689 * 359.97438 * 21 20 19 23 23 C 1.32305 * 119.94732 * 179.75374 * 22 21 20 24 24 C 1.38059 * 120.16481 * 0.52567 * 23 22 21 25 25 N 1.32344 * 120.22239 * 359.47418 * 24 23 22 26 26 C 1.32075 * 120.05685 * 0.25498 * 25 24 23 27 27 F 1.35101 * 120.08851 * 179.97438 * 26 25 24 28 28 H 0.97005 * 120.00086 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.46927 * 59.99622 * 10 9 7 30 30 H 1.08999 * 109.46916 * 300.00418 * 10 9 7 31 31 H 1.09006 * 110.36519 * 322.92679 * 14 13 11 32 32 H 1.08993 * 110.36686 * 85.25031 * 14 13 11 33 33 H 1.09002 * 111.00503 * 81.06178 * 15 14 13 34 34 H 1.08997 * 111.00439 * 204.91586 * 15 14 13 35 35 H 1.09005 * 110.72035 * 277.13634 * 16 15 14 36 36 H 1.08998 * 110.72053 * 153.86569 * 16 15 14 37 37 H 1.09000 * 109.47039 * 55.31577 * 19 17 13 38 38 H 1.08996 * 109.47197 * 295.31228 * 19 17 13 39 39 H 0.96997 * 120.00133 * 354.96058 * 20 19 17 40 40 H 1.08001 * 119.92013 * 180.25283 * 23 22 21 41 41 H 1.07998 * 119.89231 * 179.75577 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1041 1.6965 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1041 1.6964 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1293 -2.7279 0.0019 10 6 2.5159 -3.8914 0.0013 11 6 1.9874 -5.3027 0.0018 12 8 0.7912 -5.5023 0.0028 13 7 2.8441 -6.3431 0.0020 14 6 4.3117 -6.2477 0.1057 15 6 4.8407 -7.5506 -0.5442 16 6 3.7767 -8.5821 -0.0846 17 6 2.4701 -7.7612 -0.1002 18 1 1.9307 -7.9361 -1.0312 19 6 1.5937 -8.1553 1.0904 20 7 1.1344 -9.5363 0.9228 21 6 0.4060 -10.1546 1.9340 22 7 0.1265 -9.4964 3.0502 23 6 -0.5707 -10.0860 4.0077 24 6 -0.9990 -11.3892 3.8519 25 7 -0.7238 -12.0525 2.7403 26 6 -0.0330 -11.4707 1.7766 27 9 0.2488 -12.1474 0.6418 28 1 -0.4850 0.8401 0.0004 29 1 3.1251 -3.7309 0.8907 30 1 3.1238 -3.7317 -0.8891 31 1 4.6747 -5.3769 -0.4404 32 1 4.6154 -6.1946 1.1511 33 1 4.8589 -7.4658 -1.6307 34 1 5.8268 -7.8076 -0.1573 35 1 3.9956 -8.9396 0.9217 36 1 3.7179 -9.4141 -0.7862 37 1 0.7320 -7.4898 1.1433 38 1 2.1726 -8.0740 2.0104 39 1 1.3383 -10.0196 0.1069 40 1 -0.8016 -9.5480 4.9152 41 1 -1.5645 -11.8675 4.6380 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110531161.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:09 Heat of formation + Delta-G solvation = -41.268171 kcal Electronic energy + Delta-G solvation = -26318.170420 eV Core-core repulsion = 22273.337767 eV Total energy + Delta-G solvation = -4044.832653 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.10913 -41.99045 -41.27329 -38.77005 -37.27039 -34.87666 -34.59305 -33.14145 -32.20474 -30.64390 -29.60031 -27.67102 -26.89247 -25.33301 -24.51234 -23.64920 -22.06899 -20.67768 -19.80258 -19.30796 -19.07395 -18.68538 -18.02635 -17.50996 -17.46268 -16.88704 -16.50869 -16.16693 -16.07158 -15.69222 -15.54509 -15.34404 -15.03683 -14.89787 -14.58966 -14.33894 -14.13550 -14.03847 -13.78599 -13.54852 -13.18668 -13.07776 -12.86949 -12.75779 -12.64527 -12.55742 -12.15883 -11.98886 -11.75078 -11.66896 -11.26761 -11.13453 -10.91256 -10.33364 -10.29259 -9.79014 -8.95593 -8.68826 -8.35199 -6.13988 -0.29024 0.05472 1.19802 1.41059 1.43665 1.49987 1.53780 1.70913 2.14837 2.26812 2.43062 2.57445 2.98882 3.16945 3.19327 3.25318 3.46628 3.53269 3.76736 3.90612 4.01365 4.07763 4.18150 4.26304 4.27316 4.38860 4.44812 4.49180 4.61625 4.74177 4.81048 4.90297 4.97644 5.07783 5.14746 5.31546 5.37608 5.40594 5.71269 5.87587 6.18720 6.33040 6.34325 6.77807 7.05732 7.08208 8.73793 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.016058 B = 0.002408 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.240908 B =11626.973048 C =12843.309539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.279 1.279 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.151 6.151 10 C -0.119 4.119 11 C 0.546 3.454 12 O -0.559 6.559 13 N -0.611 5.611 14 C 0.086 3.914 15 C -0.120 4.120 16 C -0.118 4.118 17 C 0.125 3.875 18 H 0.073 0.927 19 C 0.134 3.866 20 N -0.697 5.697 21 C 0.344 3.656 22 N -0.506 5.506 23 C 0.104 3.896 24 C 0.019 3.981 25 N -0.453 5.453 26 C 0.174 3.826 27 F -0.113 7.113 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.042 0.958 38 H 0.070 0.930 39 H 0.422 0.578 40 H 0.213 0.787 41 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.607 -23.808 5.072 26.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.693 4.693 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.270 4.270 11 C 0.335 3.665 12 O -0.437 6.437 13 N -0.346 5.346 14 C -0.035 4.035 15 C -0.157 4.157 16 C -0.155 4.155 17 C 0.021 3.979 18 H 0.091 0.909 19 C 0.009 3.991 20 N -0.331 5.331 21 C 0.102 3.898 22 N -0.229 5.229 23 C -0.057 4.057 24 C -0.142 4.142 25 N -0.172 5.172 26 C 0.010 3.990 27 F -0.093 7.093 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.101 0.899 34 H 0.132 0.868 35 H 0.105 0.895 36 H 0.124 0.876 37 H 0.060 0.940 38 H 0.088 0.912 39 H 0.261 0.739 40 H 0.230 0.770 41 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 8.746 -23.754 5.018 25.805 hybrid contribution 1.198 1.093 -0.600 1.729 sum 9.943 -22.661 4.418 25.138 Atomic orbital electron populations 1.70186 1.08010 1.28691 1.47935 1.26146 0.95968 1.03361 0.93705 0.84997 0.77800 0.75607 0.79557 1.18589 1.20457 1.18559 1.23152 0.95326 0.91865 1.58996 0.89858 1.85607 1.10470 0.99271 1.97037 1.23302 1.03422 0.93919 1.06380 1.19822 0.85507 0.85989 0.75218 1.90697 1.17010 1.85603 1.50340 1.48431 1.08505 1.04582 1.73067 1.22730 0.77310 1.01101 1.02370 1.22788 0.99565 0.91835 1.01549 1.22766 0.90979 0.97795 1.03996 1.21835 0.97796 0.81174 0.97110 0.90866 1.21486 0.97908 0.81123 0.98596 1.44297 1.56936 1.14207 1.17666 1.19136 0.92299 0.88029 0.90326 1.68207 1.17192 1.36587 1.00962 1.24262 0.90133 0.93685 0.97595 1.23880 1.02069 0.93344 0.94906 1.67636 1.09806 1.38291 1.01459 1.18378 1.05088 0.88626 0.86899 1.91578 1.91556 1.80269 1.45858 0.91990 0.87574 0.87473 0.89609 0.89930 0.89883 0.86810 0.89484 0.87559 0.93974 0.91208 0.73929 0.77040 0.76750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.18 13.22 21.65 0.29 -55.89 16 2 C 0.01 0.74 5.49 84.86 0.47 1.20 16 3 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 4 H -0.26 -10.72 7.11 99.48 0.71 -10.01 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.55 -31.09 9.50 67.95 0.65 -30.44 16 8 H 0.08 4.38 7.80 -2.91 -0.02 4.35 16 9 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 10 C -0.12 -4.78 5.09 71.24 0.36 -4.41 16 11 C 0.55 20.64 7.68 87.66 0.67 21.31 16 12 O -0.56 -26.25 14.66 -3.02 -0.04 -26.30 16 13 N -0.61 -15.93 3.06 -788.05 -2.42 -18.35 16 14 C 0.09 1.45 6.74 86.86 0.59 2.04 16 15 C -0.12 -1.20 7.09 31.99 0.23 -0.97 16 16 C -0.12 -1.35 6.21 31.78 0.20 -1.15 16 17 C 0.12 2.64 2.95 45.34 0.13 2.78 16 18 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 19 C 0.13 3.34 5.11 86.38 0.44 3.79 16 20 N -0.70 -14.75 5.52 -344.41 -1.90 -16.65 16 21 C 0.34 8.08 7.50 133.10 1.00 9.08 16 22 N -0.51 -12.00 9.73 -192.42 -1.87 -13.88 16 23 C 0.10 1.63 11.21 84.58 0.95 2.58 16 24 C 0.02 0.27 11.21 84.57 0.95 1.22 16 25 N -0.45 -9.81 10.50 -195.79 -2.06 -11.86 16 26 C 0.17 4.03 8.47 84.99 0.72 4.75 16 27 F -0.11 -2.54 16.68 44.97 0.75 -1.79 16 28 H 0.27 15.53 8.31 -92.70 -0.77 14.76 16 29 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 30 H 0.11 3.89 7.95 -2.40 -0.02 3.87 16 31 H 0.09 1.42 7.48 -2.38 -0.02 1.40 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 34 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 0.94 7.77 -2.38 -0.02 0.92 16 36 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.04 1.47 6.56 -2.39 -0.02 1.46 16 38 H 0.07 1.74 8.03 -2.39 -0.02 1.72 16 39 H 0.42 7.02 7.89 -92.71 -0.73 6.29 16 40 H 0.21 1.65 8.06 -2.91 -0.02 1.63 16 41 H 0.22 1.22 8.06 -2.91 -0.02 1.20 16 Total: -1.00 -83.17 365.82 1.30 -81.87 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: 0.34 Total: 15.30 kcal Atomic # 6 Polarization: 4.42 SS G_CDS: 7.35 Total: 11.77 kcal Atomic # 7 Polarization: -108.67 SS G_CDS: -7.96 Total: -116.63 kcal Atomic # 8 Polarization: -26.25 SS G_CDS: -0.04 Total: -26.30 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.75 Total: -1.79 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -83.17 1.30 -81.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110531161.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.600 kcal (2) G-P(sol) polarization free energy of solvation -83.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds