Wall clock time and date at job start Sat Apr 11 2020 05:55:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 110.28968 * 2 1 4 4 C 1.34780 * 119.99566 * 59.30277 * 3 2 1 5 5 O 1.21280 * 120.00423 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99795 * 180.02562 * 4 3 2 7 7 S 1.81002 * 109.47156 * 179.97438 * 6 4 3 8 8 C 1.76193 * 100.00049 * 180.02562 * 7 6 4 9 9 H 1.08005 * 120.00026 * 359.97438 * 8 7 6 10 10 C 1.38806 * 120.00056 * 180.02562 * 8 7 6 11 11 N 1.31623 * 119.99640 * 359.97438 * 10 8 7 12 12 Si 1.86796 * 120.00053 * 179.97438 * 10 8 7 13 13 H 1.48508 * 109.47315 * 359.97438 * 12 10 8 14 14 H 1.48494 * 109.47332 * 119.99854 * 12 10 8 15 15 H 1.48499 * 109.47328 * 240.00154 * 12 10 8 16 16 C 1.54258 * 110.32054 * 122.13222 * 2 1 3 17 17 C 1.54380 * 105.06120 * 118.99855 * 16 2 1 18 18 N 1.48557 * 104.59673 * 23.85124 * 17 16 2 19 19 C 1.38570 * 111.00268 * 200.96440 * 18 17 16 20 20 C 1.39463 * 120.50977 * 300.12460 * 19 18 17 21 21 C 1.38470 * 118.31265 * 180.02562 * 20 19 18 22 22 F 1.35093 * 120.43488 * 180.02562 * 21 20 19 23 23 N 1.32792 * 119.13655 * 359.97438 * 21 20 19 24 24 C 1.31760 * 120.96409 * 359.97438 * 23 21 20 25 25 N 1.31763 * 121.85585 * 359.71437 * 24 23 21 26 26 C 1.48828 * 104.23349 * 320.49251 * 18 17 16 27 27 H 1.09004 * 109.47009 * 60.69545 * 1 2 3 28 28 H 1.09001 * 109.47451 * 180.69734 * 1 2 3 29 29 H 1.08999 * 109.46918 * 300.69970 * 1 2 3 30 30 H 0.96995 * 120.00423 * 239.29582 * 3 2 1 31 31 H 1.09002 * 109.47060 * 299.99722 * 6 4 3 32 32 H 1.09001 * 109.47380 * 59.99809 * 6 4 3 33 33 H 0.97010 * 119.99946 * 180.02562 * 11 10 8 34 34 H 1.09003 * 110.32286 * 237.89002 * 16 2 1 35 35 H 1.08997 * 110.32559 * 359.97438 * 16 2 1 36 36 H 1.08997 * 110.40988 * 142.62932 * 17 16 2 37 37 H 1.09002 * 110.40793 * 265.07239 * 17 16 2 38 38 H 1.07997 * 120.84985 * 359.97438 * 20 19 18 39 39 H 1.07999 * 119.07125 * 179.97438 * 24 23 21 40 40 H 1.08994 * 110.45403 * 280.77227 * 26 18 17 41 41 H 1.09005 * 110.49659 * 158.25199 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3741 0.0000 4 6 1.7128 2.2127 1.0037 5 8 0.9992 1.8300 1.9066 6 6 2.2348 3.6264 1.0035 7 16 1.6264 4.4945 2.4706 8 6 2.3667 6.0737 2.2206 9 1 2.9826 6.2499 1.3510 10 6 2.1594 7.0911 3.1419 11 7 1.4094 6.8761 4.2019 12 14 2.9449 8.7651 2.8772 13 1 3.7350 8.7480 1.6199 14 1 1.8843 9.8000 2.7819 15 1 3.8405 9.0779 4.0197 16 6 2.0657 -0.7694 1.2250 17 6 2.8828 -1.9401 0.6375 18 7 3.2721 -1.4807 -0.7205 19 6 3.5926 -2.5547 -1.5353 20 6 4.6318 -3.4189 -1.1915 21 6 4.9135 -4.4771 -2.0390 22 9 5.9106 -5.3407 -1.7473 23 7 4.1901 -4.6327 -3.1416 24 6 3.2142 -3.7976 -3.4356 25 7 2.9092 -2.7816 -2.6540 26 6 2.0662 -0.7699 -1.2260 27 1 -0.3633 0.5030 -0.8962 28 1 -0.3634 -1.0276 0.0125 29 1 -0.3633 0.5247 0.8836 30 1 2.6085 1.6803 -0.7222 31 1 3.3247 3.6112 1.0157 32 1 1.8887 4.1414 0.1073 33 1 1.2641 7.5873 4.8456 34 1 2.7067 -0.1247 1.8264 35 1 1.2387 -1.1466 1.8265 36 1 3.7688 -2.1273 1.2441 37 1 2.2682 -2.8381 0.5734 38 1 5.2030 -3.2663 -0.2877 39 1 2.6456 -3.9527 -4.3406 40 1 1.3236 -1.4845 -1.5808 41 1 2.3377 -0.0760 -2.0217 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110720991.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:12 Heat of formation + Delta-G solvation = -6.319309 kcal Electronic energy + Delta-G solvation = -26348.495606 eV Core-core repulsion = 22305.178449 eV Total energy + Delta-G solvation = -4043.317156 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.67087 -41.81144 -40.25969 -38.44352 -35.33823 -33.48237 -32.49212 -32.43882 -31.07623 -29.94055 -28.52800 -26.69799 -25.49666 -25.07516 -23.93355 -22.14375 -21.23153 -19.57369 -18.76200 -18.61056 -17.86153 -16.96543 -16.73764 -16.44926 -16.14209 -16.07954 -15.42525 -15.05676 -14.96627 -14.81763 -14.73454 -14.24363 -14.09674 -13.64203 -13.30706 -13.22808 -13.12901 -12.70189 -12.53319 -12.35747 -12.06817 -11.78864 -11.46151 -11.25367 -11.18307 -11.08314 -11.04361 -10.97833 -10.76642 -10.37553 -10.06013 -9.81751 -9.30003 -9.22364 -9.09246 -8.92499 -8.25196 -6.51386 -6.23636 -3.93725 0.25256 0.35764 2.66422 2.86743 2.98750 3.05076 3.12477 3.20395 3.26832 3.31197 3.51009 3.68177 3.94146 4.17312 4.19197 4.28716 4.46193 4.57060 4.69402 4.78624 4.95057 5.04249 5.06360 5.11947 5.19365 5.28895 5.38845 5.43304 5.54439 5.68184 5.70219 5.77146 5.87158 5.88694 6.00768 6.13720 6.26232 6.35281 6.37580 6.67691 7.41259 7.58547 7.70168 8.33902 8.59600 9.22228 10.83791 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.024379 B = 0.002041 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1148.272255 B =13714.272040 C =14088.231977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.174 3.826 3 N -0.726 5.726 4 C 0.536 3.464 5 O -0.513 6.513 6 C -0.154 4.154 7 S -0.059 6.059 8 C -0.535 4.535 9 H 0.073 0.927 10 C 0.073 3.927 11 N -0.868 5.868 12 Si 0.918 3.082 13 H -0.272 1.272 14 H -0.280 1.280 15 H -0.280 1.280 16 C -0.124 4.124 17 C 0.043 3.957 18 N -0.451 5.451 19 C 0.378 3.622 20 C -0.263 4.263 21 C 0.371 3.629 22 F -0.099 7.099 23 N -0.572 5.572 24 C 0.360 3.640 25 N -0.559 5.559 26 C 0.045 3.955 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.089 0.911 30 H 0.399 0.601 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.268 0.732 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.061 0.939 38 H 0.161 0.839 39 H 0.210 0.790 40 H 0.089 0.911 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.456 -22.440 -13.900 26.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.086 3.914 3 N -0.381 5.381 4 C 0.322 3.678 5 O -0.387 6.387 6 C -0.305 4.305 7 S 0.167 5.833 8 C -0.683 4.683 9 H 0.091 0.909 10 C -0.136 4.136 11 N -0.503 5.503 12 Si 0.745 3.255 13 H -0.196 1.196 14 H -0.206 1.206 15 H -0.206 1.206 16 C -0.163 4.163 17 C -0.082 4.082 18 N -0.168 5.168 19 C 0.138 3.862 20 C -0.289 4.289 21 C 0.212 3.788 22 F -0.078 7.078 23 N -0.295 5.295 24 C 0.071 3.929 25 N -0.281 5.281 26 C -0.081 4.081 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.108 0.892 30 H 0.234 0.766 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.078 0.922 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.115 0.885 37 H 0.079 0.921 38 H 0.179 0.821 39 H 0.226 0.774 40 H 0.107 0.893 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.187 -22.788 -12.924 26.288 hybrid contribution 1.966 1.194 -0.957 2.491 sum 4.152 -21.594 -13.881 26.004 Atomic orbital electron populations 1.22227 0.92922 1.02293 1.04428 1.20935 0.94479 0.82266 0.93701 1.46157 1.53785 1.11142 1.27046 1.20252 0.79823 0.86660 0.81059 1.90664 1.35848 1.76949 1.35270 1.23544 1.04332 0.95079 1.07527 1.85347 1.66235 1.08530 1.23173 1.22909 1.36138 0.97248 1.11992 0.90912 1.24991 0.95115 0.99041 0.94469 1.70024 1.36039 1.33425 1.10809 0.86122 0.78940 0.82152 0.78315 1.19624 1.20569 1.20575 1.22790 1.00204 0.95768 0.97580 1.23357 1.00441 0.98090 0.86321 1.62244 1.34480 1.16745 1.03299 1.20126 0.88972 0.86880 0.90207 1.22073 1.03735 0.97885 1.05255 1.18120 0.84933 0.85972 0.89787 1.91684 1.56292 1.67977 1.91804 1.67881 1.09975 1.32838 1.18772 1.24711 0.88393 0.83298 0.96542 1.68470 1.29840 1.22617 1.07142 1.23474 0.90034 0.97776 0.96825 0.92191 0.92048 0.89231 0.76617 0.89303 0.89309 0.92248 0.89240 0.89248 0.88507 0.92099 0.82137 0.77410 0.89256 0.88463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.73 8.15 37.16 0.30 -1.43 16 2 C 0.17 1.80 1.01 -130.44 -0.13 1.67 16 3 N -0.73 -8.86 5.09 -46.33 -0.24 -9.10 16 4 C 0.54 9.12 7.03 -10.98 -0.08 9.05 16 5 O -0.51 -10.36 13.15 5.56 0.07 -10.29 16 6 C -0.15 -2.97 6.16 36.01 0.22 -2.75 16 7 S -0.06 -1.56 20.57 -107.50 -2.21 -3.78 16 8 C -0.53 -15.00 9.50 30.94 0.29 -14.71 16 9 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 10 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 11 N -0.87 -25.84 13.22 55.49 0.73 -25.11 16 12 Si 0.92 21.22 29.55 -169.99 -5.02 16.20 16 13 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 14 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 15 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 16 C -0.12 -1.28 5.53 -25.35 -0.14 -1.42 16 17 C 0.04 0.34 5.94 -2.18 -0.01 0.32 16 18 N -0.45 -3.92 5.42 -168.42 -0.91 -4.83 16 19 C 0.38 3.29 6.23 -154.77 -0.96 2.33 16 20 C -0.26 -2.10 9.49 -39.04 -0.37 -2.47 16 21 C 0.37 3.32 8.50 -17.05 -0.14 3.17 16 22 F -0.10 -0.89 17.30 2.25 0.04 -0.85 16 23 N -0.57 -5.22 10.45 -14.98 -0.16 -5.38 16 24 C 0.36 2.63 12.28 -92.21 -1.13 1.50 16 25 N -0.56 -4.73 8.64 -13.84 -0.12 -4.85 16 26 C 0.05 0.39 5.10 -2.03 -0.01 0.38 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.09 1.26 6.17 -51.93 -0.32 0.94 16 30 H 0.40 4.03 8.27 -40.82 -0.34 3.69 16 31 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 32 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.09 1.13 7.40 -51.93 -0.38 0.75 16 35 H 0.09 0.91 7.71 -51.93 -0.40 0.51 16 36 H 0.10 0.66 8.09 -51.93 -0.42 0.24 16 37 H 0.06 0.43 7.97 -51.93 -0.41 0.01 16 38 H 0.16 1.02 7.99 -52.49 -0.42 0.60 16 39 H 0.21 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.09 0.74 6.99 -51.93 -0.36 0.37 16 41 H 0.10 0.81 7.76 -51.93 -0.40 0.41 16 LS Contribution 360.21 15.07 5.43 5.43 Total: -1.00 -33.70 360.21 -9.77 -43.47 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -5.12 Total: 1.48 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.26 Total: -2.39 kcal Atomic # 7 Polarization: -48.57 SS G_CDS: -0.69 Total: -49.26 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.07 Total: -10.29 kcal Atomic # 9 Polarization: -0.89 SS G_CDS: 0.04 Total: -0.85 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.78 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.70 -9.77 -43.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110720991.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.147 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.449 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds