Wall clock time and date at job start Sat Apr 11 2020 05:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 110.28768 * 2 1 4 4 C 1.34774 * 119.99961 * 57.87053 * 3 2 1 5 5 O 1.21281 * 120.00138 * 359.97438 * 4 3 2 6 6 C 1.50701 * 119.99741 * 180.02562 * 4 3 2 7 7 S 1.81005 * 109.47173 * 179.97438 * 6 4 3 8 8 C 1.76189 * 100.00097 * 179.97438 * 7 6 4 9 9 H 1.07999 * 120.00127 * 0.02562 * 8 7 6 10 10 C 1.38805 * 120.00013 * 180.02562 * 8 7 6 11 11 N 1.31633 * 120.00034 * 179.97438 * 10 8 7 12 12 Si 1.86803 * 119.99929 * 359.97438 * 10 8 7 13 13 H 1.48498 * 109.47174 * 270.00277 * 12 10 8 14 14 H 1.48501 * 109.47062 * 30.00228 * 12 10 8 15 15 H 1.48490 * 109.46901 * 150.00205 * 12 10 8 16 16 C 1.54263 * 110.40606 * 122.18315 * 2 1 3 17 17 C 1.54377 * 105.05731 * 118.94366 * 16 2 1 18 18 N 1.48557 * 104.60043 * 23.84782 * 17 16 2 19 19 C 1.39146 * 111.00418 * 200.96125 * 18 17 16 20 20 C 1.39210 * 120.06231 * 295.42179 * 19 18 17 21 21 N 1.32009 * 119.93663 * 180.02562 * 20 19 18 22 22 C 1.32401 * 120.05073 * 359.97438 * 21 20 19 23 23 F 1.35102 * 119.93583 * 180.02562 * 22 21 20 24 24 C 1.38465 * 120.12359 * 0.02607 * 22 21 20 25 25 N 1.32217 * 120.07276 * 359.67744 * 24 22 21 26 26 C 1.48561 * 104.22197 * 320.52381 * 18 17 16 27 27 H 1.09011 * 109.46786 * 60.70346 * 1 2 3 28 28 H 1.09004 * 109.47116 * 180.69809 * 1 2 3 29 29 H 1.08997 * 109.47120 * 300.70616 * 1 2 3 30 30 H 0.97002 * 119.99685 * 237.87555 * 3 2 1 31 31 H 1.09005 * 109.47318 * 59.99759 * 6 4 3 32 32 H 1.09002 * 109.47150 * 299.99724 * 6 4 3 33 33 H 0.97001 * 119.99662 * 179.97438 * 11 10 8 34 34 H 1.09003 * 110.32233 * 237.83812 * 16 2 1 35 35 H 1.08999 * 110.32587 * 0.04309 * 16 2 1 36 36 H 1.09003 * 110.41137 * 265.07305 * 17 16 2 37 37 H 1.08997 * 110.41272 * 142.63137 * 17 16 2 38 38 H 1.08003 * 120.03541 * 0.02562 * 20 19 18 39 39 H 1.08005 * 119.96371 * 180.02562 * 24 22 21 40 40 H 1.09003 * 110.40663 * 280.70014 * 26 18 17 41 41 H 1.08999 * 110.51580 * 158.31138 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0380 1.3741 0.0000 4 6 1.6894 2.2214 0.9884 5 8 0.9548 1.8465 1.8776 6 6 2.2115 3.6351 0.9881 7 16 1.5690 4.5160 2.4329 8 6 2.3163 6.0925 2.1874 9 1 2.9522 6.2612 1.3309 10 6 2.0879 7.1177 3.0949 11 7 2.6467 8.2954 2.9117 12 14 0.9876 6.8261 4.5760 13 1 -0.4157 7.1604 4.2236 14 1 1.0700 5.3996 4.9807 15 1 1.4338 7.6863 5.7011 16 6 2.0679 -0.7701 1.2237 17 6 2.8839 -1.9404 0.6340 18 7 3.2708 -1.4802 -0.7244 19 6 3.5913 -2.5583 -1.5438 20 6 4.6917 -3.3573 -1.2464 21 7 4.9938 -4.3791 -2.0256 22 6 4.2508 -4.6444 -3.0889 23 9 4.5618 -5.6910 -3.8846 24 6 3.1557 -3.8512 -3.3869 25 7 2.8452 -2.8301 -2.6064 26 6 2.0663 -0.7699 -1.2260 27 1 -0.3633 0.5029 -0.8963 28 1 -0.3633 -1.0276 0.0125 29 1 -0.3633 0.5247 0.8836 30 1 2.6252 1.6741 -0.7115 31 1 1.8865 4.1423 0.0796 32 1 3.3008 3.6202 1.0260 33 1 2.4867 9.0119 3.5457 34 1 2.7099 -0.1257 1.8243 35 1 1.2419 -1.1496 1.8252 36 1 2.2693 -2.8384 0.5704 37 1 3.7711 -2.1280 1.2389 38 1 5.2979 -3.1414 -0.3789 39 1 2.5511 -4.0702 -4.2547 40 1 1.3236 -1.4846 -1.5806 41 1 2.3358 -0.0762 -2.0224 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110721249.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:16 Heat of formation + Delta-G solvation = -28.712815 kcal Electronic energy + Delta-G solvation = -26346.736305 eV Core-core repulsion = 22302.448093 eV Total energy + Delta-G solvation = -4044.288212 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.15918 -42.54782 -41.25870 -39.44748 -36.18408 -35.25969 -34.65579 -33.34210 -31.44335 -30.27959 -29.91425 -27.83165 -27.48999 -25.89545 -24.71907 -22.81553 -22.37334 -20.61544 -19.87332 -19.32374 -19.17291 -18.51118 -17.76742 -17.65336 -17.33192 -17.07134 -16.40133 -16.17477 -15.91123 -15.56554 -15.47777 -15.35809 -14.98335 -14.82171 -14.69584 -14.24927 -14.18322 -13.99557 -13.48100 -13.37938 -13.29706 -13.08373 -13.00525 -12.94087 -12.69939 -12.48138 -12.45941 -12.05056 -11.92595 -11.84261 -11.15643 -11.05273 -10.71315 -10.50829 -10.45745 -10.09714 -9.44100 -8.96025 -8.50069 -6.19970 -0.54119 -0.20637 1.01814 1.32745 1.48188 1.58143 1.64287 2.10285 2.24011 2.27473 2.27971 2.42364 2.73838 2.88175 2.97254 3.17078 3.28392 3.62331 3.75050 3.90610 3.94119 3.98360 4.09139 4.24968 4.31105 4.39329 4.49644 4.53692 4.59725 4.69744 4.75126 4.76557 4.92722 5.03583 5.16460 5.18081 5.37783 5.62200 5.66603 5.72011 5.99825 6.13051 6.40991 6.54637 6.95076 7.27346 8.62367 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.031634 B = 0.002029 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 884.911991 B =13798.179495 C =14028.220388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.172 3.828 3 N -0.703 5.703 4 C 0.541 3.459 5 O -0.547 6.547 6 C -0.114 4.114 7 S -0.169 6.169 8 C -0.530 4.530 9 H 0.060 0.940 10 C 0.043 3.957 11 N -0.918 5.918 12 Si 0.916 3.084 13 H -0.263 1.263 14 H -0.234 1.234 15 H -0.261 1.261 16 C -0.123 4.123 17 C 0.046 3.954 18 N -0.449 5.449 19 C 0.243 3.757 20 C 0.092 3.908 21 N -0.473 5.473 22 C 0.214 3.786 23 F -0.108 7.108 24 C 0.079 3.921 25 N -0.459 5.459 26 C 0.051 3.949 27 H 0.063 0.937 28 H 0.082 0.918 29 H 0.057 0.943 30 H 0.413 0.587 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.276 0.724 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.069 0.931 37 H 0.113 0.887 38 H 0.202 0.798 39 H 0.213 0.787 40 H 0.094 0.906 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.256 -28.281 -12.542 30.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.085 3.915 3 N -0.357 5.357 4 C 0.326 3.674 5 O -0.424 6.424 6 C -0.265 4.265 7 S 0.058 5.942 8 C -0.677 4.677 9 H 0.078 0.922 10 C -0.162 4.162 11 N -0.556 5.556 12 Si 0.738 3.262 13 H -0.187 1.187 14 H -0.158 1.158 15 H -0.185 1.185 16 C -0.162 4.162 17 C -0.079 4.079 18 N -0.167 5.167 19 C 0.009 3.991 20 C -0.073 4.073 21 N -0.192 5.192 22 C 0.058 3.942 23 F -0.088 7.088 24 C -0.083 4.083 25 N -0.178 5.178 26 C -0.076 4.076 27 H 0.082 0.918 28 H 0.100 0.900 29 H 0.076 0.924 30 H 0.250 0.750 31 H 0.127 0.873 32 H 0.127 0.873 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.131 0.869 38 H 0.219 0.781 39 H 0.230 0.770 40 H 0.112 0.888 41 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -0.460 -28.416 -11.036 30.488 hybrid contribution 0.625 0.671 -1.066 1.406 sum 0.165 -27.745 -12.103 30.270 Atomic orbital electron populations 1.22174 0.93103 1.03253 1.03008 1.21102 0.94353 0.80890 0.95164 1.45921 1.51393 1.11215 1.27188 1.19759 0.79914 0.86037 0.81658 1.90659 1.36848 1.77677 1.37260 1.23295 1.05145 0.95536 1.02504 1.84608 1.66761 1.09454 1.33388 1.22492 1.34505 0.96848 1.13890 0.92194 1.25605 0.96420 0.93839 1.00358 1.70026 1.44120 1.03238 1.38250 0.85838 0.79606 0.81162 0.79575 1.18733 1.15826 1.18546 1.22704 0.99994 0.96377 0.97143 1.23369 1.00915 0.97093 0.86511 1.62682 1.34385 1.16637 1.03038 1.21189 0.93450 0.91185 0.93299 1.23434 0.95314 0.89002 0.99541 1.67738 1.29246 1.18252 1.04009 1.19242 0.95514 0.88739 0.90666 1.91647 1.92794 1.54321 1.69994 1.23855 0.94638 0.89602 1.00209 1.68505 1.27455 1.16395 1.05420 1.23309 0.90799 0.97696 0.95767 0.91816 0.89963 0.92356 0.74960 0.87327 0.87302 0.91437 0.91547 0.89625 0.91232 0.86931 0.78138 0.77047 0.88759 0.88148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 8.14 71.98 0.59 -2.40 16 2 C 0.17 3.04 1.01 4.50 0.00 3.04 16 3 N -0.70 -14.94 5.08 -418.88 -2.13 -17.06 16 4 C 0.54 16.85 7.05 87.66 0.62 17.46 16 5 O -0.55 -20.63 13.16 -3.03 -0.04 -20.67 16 6 C -0.11 -4.10 6.16 71.24 0.44 -3.66 16 7 S -0.17 -8.26 18.55 -56.49 -1.05 -9.30 16 8 C -0.53 -30.51 10.04 67.96 0.68 -29.83 16 9 H 0.06 3.66 8.03 -2.91 -0.02 3.64 16 10 C 0.04 2.50 5.50 84.86 0.47 2.97 16 11 N -0.92 -55.74 13.97 21.65 0.30 -55.43 16 12 Si 0.92 44.50 27.74 68.60 1.90 46.40 16 13 H -0.26 -12.44 7.11 99.48 0.71 -11.73 16 14 H -0.23 -11.27 6.74 99.48 0.67 -10.60 16 15 H -0.26 -11.94 7.11 99.48 0.71 -11.23 16 16 C -0.12 -2.16 5.58 31.49 0.18 -1.99 16 17 C 0.05 0.54 6.06 86.45 0.52 1.06 16 18 N -0.45 -5.97 5.41 -687.47 -3.72 -9.68 16 19 C 0.24 3.30 6.15 132.96 0.82 4.12 16 20 C 0.09 1.20 10.67 84.90 0.91 2.11 16 21 N -0.47 -7.93 10.50 -195.81 -2.06 -9.98 16 22 C 0.21 3.15 8.43 84.66 0.71 3.87 16 23 F -0.11 -1.67 17.29 44.97 0.78 -0.90 16 24 C 0.08 0.87 11.20 84.69 0.95 1.82 16 25 N -0.46 -6.19 8.60 -192.40 -1.65 -7.84 16 26 C 0.05 0.70 5.13 86.45 0.44 1.14 16 27 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 28 H 0.08 1.20 8.14 -2.38 -0.02 1.18 16 29 H 0.06 1.54 6.07 -2.39 -0.01 1.52 16 30 H 0.41 6.84 8.28 -92.71 -0.77 6.07 16 31 H 0.11 3.64 8.14 -2.39 -0.02 3.62 16 32 H 0.11 3.67 8.14 -2.39 -0.02 3.65 16 33 H 0.28 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.07 1.49 7.50 -2.39 -0.02 1.47 16 35 H 0.09 1.54 7.71 -2.39 -0.02 1.52 16 36 H 0.07 0.70 7.97 -2.39 -0.02 0.68 16 37 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.20 1.66 8.06 -2.91 -0.02 1.64 16 39 H 0.21 0.85 8.06 -2.91 -0.02 0.82 16 40 H 0.09 1.22 6.87 -2.39 -0.02 1.20 16 41 H 0.10 1.30 7.77 -2.39 -0.02 1.28 16 Total: -1.00 -73.13 357.71 -0.06 -73.19 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.27 Total: 11.58 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: 7.32 Total: -0.29 kcal Atomic # 7 Polarization: -90.75 SS G_CDS: -9.25 Total: -100.01 kcal Atomic # 8 Polarization: -20.63 SS G_CDS: -0.04 Total: -20.67 kcal Atomic # 9 Polarization: -1.67 SS G_CDS: 0.78 Total: -0.90 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.90 Total: 46.40 kcal Atomic # 16 Polarization: -8.26 SS G_CDS: -1.05 Total: -9.30 kcal Total: -73.13 -0.06 -73.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110721249.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.478 kcal (2) G-P(sol) polarization free energy of solvation -73.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds