Wall clock time and date at job start Sat Apr 11 2020 05:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 110.28658 * 2 1 4 4 C 1.34774 * 120.00108 * 60.67521 * 3 2 1 5 5 O 1.21279 * 120.00432 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99986 * 180.02562 * 4 3 2 7 7 S 1.81001 * 109.47119 * 179.97438 * 6 4 3 8 8 C 1.76201 * 99.99883 * 180.02562 * 7 6 4 9 9 H 1.07993 * 120.00387 * 0.02562 * 8 7 6 10 10 C 1.38806 * 119.99844 * 179.97438 * 8 7 6 11 11 N 1.31633 * 119.99730 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99987 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47093 * 90.00332 * 12 10 8 14 14 H 1.48493 * 109.47362 * 210.00406 * 12 10 8 15 15 H 1.48504 * 109.47175 * 330.00531 * 12 10 8 16 16 C 1.54262 * 110.32448 * 122.12472 * 2 1 3 17 17 C 1.54378 * 105.05981 * 118.89710 * 16 2 1 18 18 N 1.48563 * 104.59547 * 23.85533 * 17 16 2 19 19 C 1.39119 * 110.99828 * 200.96110 * 18 17 16 20 20 N 1.32563 * 120.10522 * 239.84831 * 19 18 17 21 21 C 1.32308 * 119.94024 * 179.75806 * 20 19 18 22 22 C 1.38065 * 120.16660 * 0.52412 * 21 20 19 23 23 N 1.32354 * 120.21994 * 359.47232 * 22 21 20 24 24 C 1.32069 * 120.05447 * 0.26112 * 23 22 21 25 25 F 1.35094 * 120.08539 * 179.97438 * 24 23 22 26 26 C 1.48565 * 104.22007 * 320.51653 * 18 17 16 27 27 H 1.09003 * 109.47012 * 299.32843 * 1 2 3 28 28 H 1.08997 * 109.47306 * 59.32997 * 1 2 3 29 29 H 1.08999 * 109.47236 * 179.32823 * 1 2 3 30 30 H 0.97003 * 120.00031 * 240.67017 * 3 2 1 31 31 H 1.09000 * 109.47036 * 299.99826 * 6 4 3 32 32 H 1.09001 * 109.47191 * 59.99561 * 6 4 3 33 33 H 0.96999 * 119.99661 * 179.97438 * 11 10 8 34 34 H 1.08997 * 110.32400 * 359.97438 * 16 2 1 35 35 H 1.09002 * 110.41133 * 237.83596 * 16 2 1 36 36 H 1.09002 * 110.41328 * 265.07296 * 17 16 2 37 37 H 1.09000 * 110.40878 * 142.63151 * 17 16 2 38 38 H 1.08000 * 119.91804 * 180.25536 * 21 20 19 39 39 H 1.08002 * 119.89335 * 179.75852 * 22 21 20 40 40 H 1.08991 * 110.41121 * 158.26291 * 26 18 17 41 41 H 1.08997 * 110.41167 * 280.70547 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0379 1.3741 0.0000 4 6 1.7354 2.2044 1.0176 5 8 1.0423 1.8142 1.9331 6 6 2.2575 3.6181 1.0173 7 16 1.6822 4.4741 2.5048 8 6 2.4169 6.0554 2.2513 9 1 3.0123 6.2391 1.3692 10 6 2.2295 7.0654 3.1848 11 7 1.5034 6.8416 4.2597 12 14 3.0090 8.7416 2.9164 13 1 2.0707 9.6082 2.1587 14 1 3.3069 9.3652 4.2307 15 1 4.2689 8.5841 2.1463 16 6 2.0658 -0.7692 1.2251 17 6 2.8807 -1.9415 0.6377 18 7 3.2694 -1.4835 -0.7210 19 6 3.5890 -2.5628 -1.5385 20 7 4.7985 -2.6571 -2.0727 21 6 5.1005 -3.6875 -2.8459 22 6 4.1555 -4.6597 -3.1066 23 7 2.9458 -4.5720 -2.5766 24 6 2.6367 -3.5500 -1.7994 25 9 1.4021 -3.4597 -1.2585 26 6 2.0662 -0.7722 -1.2245 27 1 -0.3633 0.5034 0.8960 28 1 -0.3634 0.5242 -0.8839 29 1 -0.3633 -1.0276 -0.0120 30 1 2.5921 1.6864 -0.7324 31 1 3.3473 3.6030 1.0049 32 1 1.8913 4.1405 0.1334 33 1 1.3728 7.5473 4.9122 34 1 1.2388 -1.1464 1.8267 35 1 2.7078 -0.1260 1.8269 36 1 2.2648 -2.8387 0.5748 37 1 3.7670 -2.1295 1.2436 38 1 6.0873 -3.7661 -3.2776 39 1 4.4055 -5.4968 -3.7415 40 1 2.3394 -0.0798 -2.0207 41 1 1.3229 -1.4863 -1.5789 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110722281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:26 Heat of formation + Delta-G solvation = 3.232550 kcal Electronic energy + Delta-G solvation = -26897.214439 eV Core-core repulsion = 22854.311482 eV Total energy + Delta-G solvation = -4042.902957 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.88035 -41.74861 -40.29361 -38.36065 -35.36635 -34.36516 -32.41051 -32.23081 -30.63370 -29.62700 -28.47336 -26.56138 -25.45936 -25.11090 -24.20795 -22.21792 -21.25875 -19.44567 -18.99264 -18.69427 -17.86330 -17.71992 -16.97466 -16.46929 -16.22147 -15.67606 -15.37300 -14.88194 -14.78943 -14.75468 -14.64472 -14.12462 -13.96700 -13.46309 -13.22354 -13.17602 -13.02308 -12.72592 -12.54055 -12.31606 -12.22769 -11.93732 -11.76585 -11.53646 -11.18430 -11.05022 -11.00749 -10.97127 -10.74024 -10.33147 -9.79243 -9.69069 -9.23614 -9.05308 -9.01352 -8.84322 -8.21299 -6.47285 -6.20015 -3.89885 -0.11425 0.34004 2.57296 2.78736 2.82270 3.03973 3.12680 3.23735 3.29209 3.33413 3.44604 3.72122 3.94872 4.04173 4.22513 4.33769 4.41582 4.50461 4.71344 4.78776 4.85731 5.02021 5.11106 5.15254 5.21323 5.32961 5.43083 5.50929 5.59622 5.60987 5.74752 5.85324 5.93305 6.07985 6.09396 6.18587 6.21700 6.34541 6.57030 6.74451 7.06905 7.61694 7.77244 8.37240 8.66249 9.25566 10.87377 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.002216 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.722743 B =12634.083286 C =13243.681702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.183 3.817 3 N -0.725 5.725 4 C 0.536 3.464 5 O -0.514 6.514 6 C -0.154 4.154 7 S -0.059 6.059 8 C -0.535 4.535 9 H 0.072 0.928 10 C 0.073 3.927 11 N -0.868 5.868 12 Si 0.918 3.082 13 H -0.277 1.277 14 H -0.282 1.282 15 H -0.272 1.272 16 C -0.119 4.119 17 C 0.034 3.966 18 N -0.459 5.459 19 C 0.248 3.752 20 N -0.392 5.392 21 C 0.054 3.946 22 C 0.078 3.922 23 N -0.462 5.462 24 C 0.231 3.769 25 F -0.096 7.096 26 C 0.028 3.972 27 H 0.089 0.911 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.399 0.601 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.268 0.732 34 H 0.087 0.913 35 H 0.089 0.911 36 H 0.057 0.943 37 H 0.092 0.908 38 H 0.185 0.815 39 H 0.184 0.816 40 H 0.096 0.904 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.080 -24.011 -16.641 29.652 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.096 3.904 3 N -0.380 5.380 4 C 0.322 3.678 5 O -0.388 6.388 6 C -0.304 4.304 7 S 0.167 5.833 8 C -0.683 4.683 9 H 0.090 0.910 10 C -0.136 4.136 11 N -0.503 5.503 12 Si 0.745 3.255 13 H -0.203 1.203 14 H -0.208 1.208 15 H -0.197 1.197 16 C -0.158 4.158 17 C -0.092 4.092 18 N -0.182 5.182 19 C 0.012 3.988 20 N -0.106 5.106 21 C -0.106 4.106 22 C -0.081 4.081 23 N -0.182 5.182 24 C 0.070 3.930 25 F -0.075 7.075 26 C -0.099 4.099 27 H 0.107 0.893 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.234 0.766 31 H 0.108 0.892 32 H 0.106 0.894 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.111 0.889 38 H 0.202 0.798 39 H 0.201 0.799 40 H 0.114 0.886 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 4.289 -24.214 -14.891 28.748 hybrid contribution 0.765 1.033 -1.695 2.128 sum 5.054 -23.181 -16.586 28.948 Atomic orbital electron populations 1.22237 0.92993 1.02321 1.04364 1.20765 0.94153 0.82157 0.93340 1.46133 1.54987 1.11250 1.25645 1.20236 0.79639 0.86679 0.81228 1.90667 1.36627 1.76585 1.34888 1.23541 1.04320 0.95059 1.07514 1.85347 1.67871 1.08838 1.21207 1.22873 1.37335 0.97416 1.10666 0.90964 1.24991 0.95141 0.99018 0.94470 1.70020 1.36897 1.33635 1.09778 0.86174 0.79398 0.82218 0.77750 1.20302 1.20778 1.19697 1.22708 1.00050 0.95703 0.97304 1.23425 1.00254 0.98167 0.87374 1.62370 1.35306 1.18766 1.01723 1.20826 0.89869 0.91479 0.96647 1.68255 1.16072 1.21372 1.04943 1.23916 1.01855 0.89779 0.95072 1.23676 0.87221 0.99957 0.97226 1.67706 1.21289 1.21808 1.07422 1.20218 0.82869 0.94135 0.95812 1.91629 1.38707 1.94954 1.82229 1.23711 0.90124 0.97951 0.98083 0.89258 0.92302 0.91896 0.76602 0.89246 0.89351 0.92225 0.89437 0.89267 0.92446 0.88923 0.79776 0.79915 0.88620 0.90665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 8.16 37.16 0.30 -1.59 16 2 C 0.18 2.15 1.01 -130.44 -0.13 2.01 16 3 N -0.73 -9.60 5.10 -46.33 -0.24 -9.84 16 4 C 0.54 9.58 7.01 -10.98 -0.08 9.50 16 5 O -0.51 -10.79 13.15 5.56 0.07 -10.72 16 6 C -0.15 -3.06 6.16 36.01 0.22 -2.84 16 7 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 8 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 9 H 0.07 1.95 7.80 -52.49 -0.41 1.55 16 10 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 11 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 12 Si 0.92 21.48 29.55 -169.99 -5.02 16.45 16 13 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 14 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 C -0.12 -1.43 5.48 -25.35 -0.14 -1.57 16 17 C 0.03 0.35 6.22 -2.18 -0.01 0.34 16 18 N -0.46 -4.91 5.47 -168.54 -0.92 -5.84 16 19 C 0.25 2.52 5.93 -154.58 -0.92 1.60 16 20 N -0.39 -3.72 10.53 -12.17 -0.13 -3.85 16 21 C 0.05 0.30 11.21 -17.41 -0.20 0.11 16 22 C 0.08 0.42 11.21 -17.39 -0.19 0.22 16 23 N -0.46 -4.15 10.50 -13.24 -0.14 -4.29 16 24 C 0.23 2.29 7.52 -16.93 -0.13 2.16 16 25 F -0.10 -0.98 13.13 2.25 0.03 -0.95 16 26 C 0.03 0.28 5.41 -2.18 -0.01 0.27 16 27 H 0.09 1.33 6.31 -51.93 -0.33 1.00 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.62 8.12 -51.93 -0.42 0.20 16 30 H 0.40 4.40 8.27 -40.82 -0.34 4.06 16 31 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 32 H 0.09 1.64 8.14 -51.91 -0.42 1.21 16 33 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.09 1.04 7.71 -51.93 -0.40 0.64 16 35 H 0.09 1.29 7.32 -51.93 -0.38 0.91 16 36 H 0.06 0.55 5.91 -51.93 -0.31 0.25 16 37 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.19 0.30 8.06 -52.49 -0.42 -0.12 16 39 H 0.18 0.23 8.06 -52.49 -0.42 -0.20 16 40 H 0.10 0.86 7.75 -51.93 -0.40 0.46 16 41 H 0.08 0.71 5.22 -51.93 -0.27 0.43 16 LS Contribution 354.26 15.07 5.34 5.34 Total: -1.00 -35.43 354.26 -8.50 -43.93 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -4.93 Total: 1.72 kcal Atomic # 6 Polarization: -1.65 SS G_CDS: -1.08 Total: -2.74 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: -0.69 Total: -49.23 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.07 Total: -10.72 kcal Atomic # 9 Polarization: -0.98 SS G_CDS: 0.03 Total: -0.95 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -35.43 -8.50 -43.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110722281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.165 kcal (2) G-P(sol) polarization free energy of solvation -35.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.932 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds