Wall clock time and date at job start Sat Apr 11 2020 05:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 110.28658 * 2 1 4 4 C 1.34774 * 120.00108 * 60.67521 * 3 2 1 5 5 O 1.21279 * 120.00432 * 359.97438 * 4 3 2 6 6 C 1.50704 * 119.99986 * 180.02562 * 4 3 2 7 7 S 1.81001 * 109.47119 * 179.97438 * 6 4 3 8 8 C 1.76201 * 99.99883 * 180.02562 * 7 6 4 9 9 H 1.07993 * 120.00387 * 0.02562 * 8 7 6 10 10 C 1.38806 * 119.99844 * 179.97438 * 8 7 6 11 11 N 1.31633 * 119.99730 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99987 * 179.97438 * 10 8 7 13 13 H 1.48504 * 109.47093 * 90.00332 * 12 10 8 14 14 H 1.48493 * 109.47362 * 210.00406 * 12 10 8 15 15 H 1.48504 * 109.47175 * 330.00531 * 12 10 8 16 16 C 1.54262 * 110.32448 * 122.12472 * 2 1 3 17 17 C 1.54378 * 105.05981 * 118.89710 * 16 2 1 18 18 N 1.48563 * 104.59547 * 23.85533 * 17 16 2 19 19 C 1.39119 * 110.99828 * 200.96110 * 18 17 16 20 20 N 1.32563 * 120.10522 * 239.84831 * 19 18 17 21 21 C 1.32308 * 119.94024 * 179.75806 * 20 19 18 22 22 C 1.38065 * 120.16660 * 0.52412 * 21 20 19 23 23 N 1.32354 * 120.21994 * 359.47232 * 22 21 20 24 24 C 1.32069 * 120.05447 * 0.26112 * 23 22 21 25 25 F 1.35094 * 120.08539 * 179.97438 * 24 23 22 26 26 C 1.48565 * 104.22007 * 320.51653 * 18 17 16 27 27 H 1.09003 * 109.47012 * 299.32843 * 1 2 3 28 28 H 1.08997 * 109.47306 * 59.32997 * 1 2 3 29 29 H 1.08999 * 109.47236 * 179.32823 * 1 2 3 30 30 H 0.97003 * 120.00031 * 240.67017 * 3 2 1 31 31 H 1.09000 * 109.47036 * 299.99826 * 6 4 3 32 32 H 1.09001 * 109.47191 * 59.99561 * 6 4 3 33 33 H 0.96999 * 119.99661 * 179.97438 * 11 10 8 34 34 H 1.08997 * 110.32400 * 359.97438 * 16 2 1 35 35 H 1.09002 * 110.41133 * 237.83596 * 16 2 1 36 36 H 1.09002 * 110.41328 * 265.07296 * 17 16 2 37 37 H 1.09000 * 110.40878 * 142.63151 * 17 16 2 38 38 H 1.08000 * 119.91804 * 180.25536 * 21 20 19 39 39 H 1.08002 * 119.89335 * 179.75852 * 22 21 20 40 40 H 1.08991 * 110.41121 * 158.26291 * 26 18 17 41 41 H 1.08997 * 110.41167 * 280.70547 * 26 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0379 1.3741 0.0000 4 6 1.7354 2.2044 1.0176 5 8 1.0423 1.8142 1.9331 6 6 2.2575 3.6181 1.0173 7 16 1.6822 4.4741 2.5048 8 6 2.4169 6.0554 2.2513 9 1 3.0123 6.2391 1.3692 10 6 2.2295 7.0654 3.1848 11 7 1.5034 6.8416 4.2597 12 14 3.0090 8.7416 2.9164 13 1 2.0707 9.6082 2.1587 14 1 3.3069 9.3652 4.2307 15 1 4.2689 8.5841 2.1463 16 6 2.0658 -0.7692 1.2251 17 6 2.8807 -1.9415 0.6377 18 7 3.2694 -1.4835 -0.7210 19 6 3.5890 -2.5628 -1.5385 20 7 4.7985 -2.6571 -2.0727 21 6 5.1005 -3.6875 -2.8459 22 6 4.1555 -4.6597 -3.1066 23 7 2.9458 -4.5720 -2.5766 24 6 2.6367 -3.5500 -1.7994 25 9 1.4021 -3.4597 -1.2585 26 6 2.0662 -0.7722 -1.2245 27 1 -0.3633 0.5034 0.8960 28 1 -0.3634 0.5242 -0.8839 29 1 -0.3633 -1.0276 -0.0120 30 1 2.5921 1.6864 -0.7324 31 1 3.3473 3.6030 1.0049 32 1 1.8913 4.1405 0.1334 33 1 1.3728 7.5473 4.9122 34 1 1.2388 -1.1464 1.8267 35 1 2.7078 -0.1260 1.8269 36 1 2.2648 -2.8387 0.5748 37 1 3.7670 -2.1295 1.2436 38 1 6.0873 -3.7661 -3.2776 39 1 4.4055 -5.4968 -3.7415 40 1 2.3394 -0.0798 -2.0207 41 1 1.3229 -1.4863 -1.5789 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110722281.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:25 Heat of formation + Delta-G solvation = -24.214876 kcal Electronic energy + Delta-G solvation = -26898.404649 eV Core-core repulsion = 22854.311482 eV Total energy + Delta-G solvation = -4044.093166 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -50.55645 -42.37117 -41.33616 -39.50814 -36.26099 -35.15056 -34.57170 -33.29986 -31.55394 -30.40690 -29.90743 -27.64663 -27.37714 -25.69317 -24.91456 -23.02958 -22.49326 -20.61564 -19.86550 -19.55971 -19.29865 -18.48345 -17.80638 -17.62373 -17.40651 -16.86861 -16.42954 -16.27035 -16.06664 -15.94125 -15.42492 -15.19812 -14.80288 -14.66307 -14.52380 -14.24480 -14.21028 -13.93609 -13.59391 -13.39452 -13.14790 -13.09436 -12.90448 -12.88995 -12.68361 -12.56470 -12.33278 -12.13986 -11.98528 -11.71189 -11.13218 -10.96766 -10.72615 -10.25582 -10.23302 -10.10602 -9.68120 -8.63602 -8.33728 -6.10582 -0.66266 -0.21701 1.28197 1.42604 1.47618 1.58256 1.67926 1.97715 2.14552 2.24856 2.29543 2.32650 2.93045 3.00275 3.16701 3.34242 3.41441 3.57633 3.79892 3.90102 3.97039 3.98938 4.02177 4.16723 4.32552 4.34728 4.41773 4.46202 4.54487 4.58903 4.69079 4.72120 4.85326 5.03344 5.09331 5.18020 5.35844 5.43011 5.53368 5.60152 6.00781 6.20888 6.51147 6.56512 7.07789 7.30782 8.75323 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.027212 B = 0.002216 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1028.722743 B =12634.083286 C =13243.681702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.181 3.819 3 N -0.703 5.703 4 C 0.539 3.461 5 O -0.550 6.550 6 C -0.131 4.131 7 S -0.144 6.144 8 C -0.547 4.547 9 H 0.081 0.919 10 C 0.013 3.987 11 N -0.911 5.911 12 Si 0.997 3.003 13 H -0.268 1.268 14 H -0.278 1.278 15 H -0.259 1.259 16 C -0.117 4.117 17 C 0.043 3.957 18 N -0.468 5.468 19 C 0.229 3.771 20 N -0.420 5.420 21 C 0.067 3.933 22 C 0.094 3.906 23 N -0.485 5.485 24 C 0.214 3.786 25 F -0.106 7.106 26 C 0.038 3.962 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.413 0.587 31 H 0.104 0.896 32 H 0.107 0.893 33 H 0.271 0.729 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.092 0.908 38 H 0.227 0.773 39 H 0.229 0.771 40 H 0.108 0.892 41 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 -25.059 -19.769 32.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.094 3.906 3 N -0.358 5.358 4 C 0.325 3.675 5 O -0.427 6.427 6 C -0.282 4.282 7 S 0.083 5.917 8 C -0.694 4.694 9 H 0.099 0.901 10 C -0.192 4.192 11 N -0.547 5.547 12 Si 0.819 3.181 13 H -0.193 1.193 14 H -0.203 1.203 15 H -0.183 1.183 16 C -0.156 4.156 17 C -0.084 4.084 18 N -0.191 5.191 19 C -0.005 4.005 20 N -0.135 5.135 21 C -0.095 4.095 22 C -0.066 4.066 23 N -0.206 5.206 24 C 0.054 3.946 25 F -0.085 7.085 26 C -0.088 4.088 27 H 0.075 0.925 28 H 0.087 0.913 29 H 0.100 0.900 30 H 0.251 0.749 31 H 0.122 0.878 32 H 0.125 0.875 33 H 0.080 0.920 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.110 0.890 38 H 0.243 0.757 39 H 0.245 0.755 40 H 0.126 0.874 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 6.279 -25.271 -18.045 31.681 hybrid contribution 0.249 1.141 -0.875 1.459 sum 6.528 -24.130 -18.920 31.350 Atomic orbital electron populations 1.22169 0.92913 1.03257 1.03103 1.20905 0.94244 0.81067 0.94403 1.45899 1.54006 1.11380 1.24480 1.19894 0.79436 0.86353 0.81817 1.90668 1.38425 1.77021 1.36576 1.23383 1.04983 0.95742 1.04092 1.85490 1.69209 1.10402 1.26620 1.23209 1.37384 0.97772 1.11084 0.90121 1.26113 0.95519 1.03585 0.93960 1.70181 1.38462 1.35161 1.10914 0.84970 0.78768 0.76404 0.77944 1.19290 1.20292 1.18311 1.22614 0.99717 0.96072 0.97223 1.23300 0.99967 0.97439 0.87649 1.62322 1.35352 1.19606 1.01798 1.20679 0.90486 0.91662 0.97667 1.68254 1.15856 1.23275 1.06118 1.24675 1.03452 0.88203 0.93129 1.24496 0.85690 1.00592 0.95814 1.67781 1.23144 1.21704 1.07925 1.20182 0.82691 0.94808 0.96872 1.91590 1.39261 1.95092 1.82571 1.23620 0.90289 0.97940 0.97000 0.92532 0.91332 0.90001 0.74948 0.87780 0.87510 0.92027 0.89777 0.91953 0.91753 0.88988 0.75653 0.75501 0.87408 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.67 8.16 71.98 0.59 -3.08 16 2 C 0.18 4.17 1.01 4.50 0.00 4.17 16 3 N -0.70 -18.21 5.10 -418.88 -2.14 -20.34 16 4 C 0.54 19.52 7.01 87.66 0.61 20.14 16 5 O -0.55 -24.09 13.15 -3.03 -0.04 -24.13 16 6 C -0.13 -5.21 6.16 71.24 0.44 -4.77 16 7 S -0.14 -8.01 20.57 -56.49 -1.16 -9.17 16 8 C -0.55 -31.43 9.50 67.96 0.65 -30.79 16 9 H 0.08 4.33 7.80 -2.91 -0.02 4.31 16 10 C 0.01 0.74 5.49 84.86 0.47 1.21 16 11 N -0.91 -56.19 13.22 21.65 0.29 -55.90 16 12 Si 1.00 43.97 29.55 68.60 2.03 45.99 16 13 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 14 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 15 H -0.26 -10.76 7.11 99.48 0.71 -10.06 16 16 C -0.12 -2.91 5.48 31.49 0.17 -2.74 16 17 C 0.04 0.88 6.22 86.45 0.54 1.42 16 18 N -0.47 -9.60 5.47 -687.15 -3.76 -13.36 16 19 C 0.23 4.34 5.93 133.09 0.79 5.13 16 20 N -0.42 -7.02 10.53 -192.42 -2.03 -9.05 16 21 C 0.07 0.49 11.21 84.58 0.95 1.44 16 22 C 0.09 0.65 11.21 84.57 0.95 1.59 16 23 N -0.48 -7.62 10.50 -195.79 -2.06 -9.68 16 24 C 0.21 3.96 7.52 84.99 0.64 4.60 16 25 F -0.11 -2.10 13.13 44.97 0.59 -1.51 16 26 C 0.04 0.71 5.41 86.45 0.47 1.17 16 27 H 0.06 1.74 6.31 -2.39 -0.02 1.73 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.08 1.59 8.12 -2.39 -0.02 1.57 16 30 H 0.41 8.43 8.27 -92.71 -0.77 7.66 16 31 H 0.10 3.84 8.14 -2.39 -0.02 3.82 16 32 H 0.11 3.86 8.14 -2.40 -0.02 3.84 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.73 16 34 H 0.08 2.10 7.71 -2.39 -0.02 2.09 16 35 H 0.06 1.89 7.32 -2.39 -0.02 1.87 16 36 H 0.06 1.24 5.91 -2.39 -0.01 1.22 16 37 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.23 -0.42 8.06 -2.91 -0.02 -0.44 16 39 H 0.23 -0.65 8.06 -2.91 -0.02 -0.68 16 40 H 0.11 1.73 7.75 -2.39 -0.02 1.71 16 41 H 0.08 1.45 5.22 -2.39 -0.01 1.44 16 Total: -1.00 -80.69 354.26 -0.70 -81.39 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: 0.32 Total: 16.28 kcal Atomic # 6 Polarization: -7.77 SS G_CDS: 7.26 Total: -0.51 kcal Atomic # 7 Polarization: -98.64 SS G_CDS: -9.69 Total: -108.34 kcal Atomic # 8 Polarization: -24.09 SS G_CDS: -0.04 Total: -24.13 kcal Atomic # 9 Polarization: -2.10 SS G_CDS: 0.59 Total: -1.51 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.17 kcal Total: -80.69 -0.70 -81.39 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110722281.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.175 kcal (2) G-P(sol) polarization free energy of solvation -80.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds