Wall clock time and date at job start Sat Apr 11 2020 05:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86806 * 119.99549 * 2 1 4 4 H 1.48504 * 109.46784 * 269.99833 * 3 2 1 5 5 H 1.48494 * 109.47287 * 29.99561 * 3 2 1 6 6 H 1.48504 * 109.47186 * 150.00046 * 3 2 1 7 7 C 1.38790 * 120.00115 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99984 * 179.97438 * 7 2 1 9 9 S 1.76198 * 120.00470 * 0.02562 * 7 2 1 10 10 C 1.80995 * 100.00225 * 179.97438 * 9 7 2 11 11 C 1.50703 * 109.47100 * 179.97438 * 10 9 7 12 12 O 1.21281 * 119.99736 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00143 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00400 * 180.02562 * 13 11 10 15 15 C 1.53776 * 113.61566 * 205.00567 * 14 13 11 16 16 C 1.53787 * 87.07971 * 219.93186 * 15 14 13 17 17 C 1.53000 * 113.61228 * 139.97805 * 16 15 14 18 18 N 1.46499 * 109.46840 * 174.99997 * 17 16 15 19 19 C 1.38575 * 119.99887 * 179.97438 * 18 17 16 20 20 C 1.39463 * 120.51560 * 0.02562 * 19 18 17 21 21 C 1.38466 * 118.31172 * 179.97438 * 20 19 18 22 22 F 1.35102 * 120.42854 * 179.97438 * 21 20 19 23 23 N 1.32784 * 119.14143 * 359.97438 * 21 20 19 24 24 C 1.31762 * 120.96334 * 0.02562 * 23 21 20 25 25 N 1.31760 * 121.85591 * 359.73169 * 24 23 21 26 26 C 1.53781 * 113.69047 * 107.46338 * 14 13 11 27 27 H 0.97002 * 120.00583 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.47278 * 60.00411 * 10 9 7 29 29 H 1.08998 * 109.47479 * 300.00090 * 10 9 7 30 30 H 0.97002 * 119.99626 * 0.02562 * 13 11 10 31 31 H 1.09004 * 112.84406 * 336.20132 * 14 13 11 32 32 H 1.08999 * 113.61671 * 105.38832 * 15 14 13 33 33 H 1.08993 * 113.61590 * 334.47649 * 15 14 13 34 34 H 1.08992 * 113.61688 * 270.80015 * 16 15 14 35 35 H 1.09002 * 109.47398 * 295.00323 * 17 16 15 36 36 H 1.09001 * 109.47194 * 55.00504 * 17 16 15 37 37 H 0.97000 * 120.00420 * 0.02562 * 18 17 16 38 38 H 1.08001 * 120.84019 * 359.97438 * 20 19 18 39 39 H 1.07994 * 119.07071 * 180.02562 * 24 23 21 40 40 H 1.08998 * 113.61029 * 25.45404 * 26 14 13 41 41 H 1.08997 * 113.61702 * 254.54562 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6179 0.0000 4 1 2.4977 2.0465 -1.4001 5 1 1.4476 2.6527 0.6999 6 1 3.5478 1.4404 0.7000 7 6 2.0103 -1.2019 0.0005 8 1 3.0903 -1.2019 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5160 -3.8913 0.0005 11 6 1.9876 -5.3026 0.0012 12 8 0.7913 -5.5022 0.0011 13 7 2.8444 -6.3430 0.0008 14 6 2.3308 -7.7150 0.0008 15 6 3.3109 -8.7397 0.5959 16 6 2.8721 -9.6942 -0.5272 17 6 4.0229 -10.5043 -1.1275 18 7 3.4904 -11.4632 -2.0986 19 6 4.3503 -12.3127 -2.7764 20 6 5.7242 -12.2642 -2.5421 21 6 6.5412 -13.1341 -3.2442 22 9 7.8783 -13.1234 -3.0510 23 7 5.9936 -13.9790 -4.1099 24 6 4.6909 -13.9981 -4.3070 25 7 3.8773 -13.1911 -3.6567 26 6 2.5095 -8.4417 -1.3426 27 1 -0.4851 0.8400 -0.0004 28 1 3.1246 -3.7312 0.8906 29 1 3.1247 -3.7312 -0.8894 30 1 3.8012 -6.1833 0.0004 31 1 1.3218 -7.7892 0.4065 32 1 3.0331 -9.0817 1.5929 33 1 4.3554 -8.4357 0.5273 34 1 2.0121 -10.3104 -0.2654 35 1 4.7199 -9.8309 -1.6264 36 1 4.5419 -11.0414 -0.3336 37 1 2.5361 -11.5031 -2.2677 38 1 6.1403 -11.5659 -1.8310 39 1 4.2780 -14.6982 -5.0181 40 1 3.3349 -8.0563 -1.9411 41 1 1.5847 -8.5431 -1.9106 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112832602.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:46 Heat of formation + Delta-G solvation = -8.393604 kcal Electronic energy + Delta-G solvation = -24878.855259 eV Core-core repulsion = 20835.448154 eV Total energy + Delta-G solvation = -4043.407105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -49.59744 -41.35509 -40.25268 -38.49745 -36.70181 -33.72559 -33.08108 -32.46189 -31.49482 -29.45219 -27.80151 -26.11504 -25.53523 -25.03932 -23.76550 -22.64173 -20.51771 -20.20162 -18.98589 -18.75252 -17.84804 -16.77578 -16.69894 -16.38709 -16.37542 -16.07674 -15.77463 -15.45318 -15.24798 -14.88513 -14.83517 -14.68850 -14.16579 -14.12685 -13.99900 -13.31787 -12.94340 -12.87517 -12.65873 -12.50754 -11.98083 -11.79432 -11.48796 -11.27667 -11.09439 -11.09269 -11.04324 -10.81524 -10.73260 -10.29966 -9.95770 -9.84895 -9.45578 -9.10455 -8.95814 -8.84304 -8.28066 -6.54086 -6.25028 -3.96015 0.36735 0.71198 2.28872 2.91799 2.98663 2.98874 3.19811 3.24661 3.25478 3.29225 3.64656 3.70326 3.97235 4.03073 4.17107 4.18353 4.27119 4.49963 4.53254 4.62867 4.72942 4.87702 4.96870 5.05123 5.08505 5.10281 5.29555 5.36328 5.39103 5.59787 5.63205 5.67065 5.73113 5.83381 6.00622 6.05275 6.08743 6.52340 6.57213 6.88499 7.56108 7.60464 7.62829 8.31717 8.53509 9.20369 10.82374 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.023428 B = 0.001545 C = 0.001503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1194.886681 B =18117.564528 C =18625.499584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.536 4.536 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.155 4.155 11 C 0.533 3.467 12 O -0.517 6.517 13 N -0.729 5.729 14 C 0.128 3.872 15 C -0.135 4.135 16 C -0.123 4.123 17 C 0.132 3.868 18 N -0.699 5.699 19 C 0.463 3.537 20 C -0.320 4.320 21 C 0.385 3.615 22 F -0.102 7.102 23 N -0.595 5.595 24 C 0.377 3.623 25 N -0.584 5.584 26 C -0.149 4.149 27 H 0.269 0.731 28 H 0.090 0.910 29 H 0.089 0.911 30 H 0.399 0.601 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.414 0.586 38 H 0.154 0.846 39 H 0.208 0.792 40 H 0.087 0.913 41 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.947 -27.160 -3.014 29.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.203 1.203 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.305 4.305 11 C 0.319 3.681 12 O -0.391 6.391 13 N -0.382 5.382 14 C 0.022 3.978 15 C -0.174 4.174 16 C -0.142 4.142 17 C 0.008 3.992 18 N -0.330 5.330 19 C 0.218 3.782 20 C -0.350 4.350 21 C 0.227 3.773 22 F -0.081 7.081 23 N -0.321 5.321 24 C 0.088 3.912 25 N -0.310 5.310 26 C -0.188 4.188 27 H 0.078 0.922 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.233 0.767 31 H 0.134 0.866 32 H 0.099 0.901 33 H 0.108 0.892 34 H 0.122 0.878 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.251 0.749 38 H 0.171 0.829 39 H 0.224 0.776 40 H 0.106 0.894 41 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 9.546 -27.799 -3.432 29.592 hybrid contribution 2.762 1.899 0.495 3.388 sum 12.308 -25.900 -2.937 28.825 Atomic orbital electron populations 1.70013 1.05954 1.27497 1.46789 1.24991 0.95030 0.99041 0.94495 0.86167 0.79407 0.81553 0.78366 1.20262 1.20719 1.19698 1.22863 0.94904 0.91644 1.59055 0.90922 1.85399 1.04886 0.96366 1.96725 1.23545 1.06634 0.95437 1.04926 1.20367 0.86595 0.86395 0.74704 1.90699 1.15409 1.85588 1.47391 1.45978 1.09750 1.05079 1.77400 1.22334 0.99290 0.80233 0.95981 1.23339 1.00332 0.95306 0.98383 1.22605 0.98323 0.95355 0.97924 1.21618 0.96593 0.90313 0.90687 1.44622 1.09332 1.36646 1.42393 1.18289 0.87162 0.86297 0.86438 1.21784 0.93505 1.08790 1.10884 1.18011 0.78821 0.90279 0.90225 1.91668 1.28840 1.94812 1.92773 1.67864 1.15952 1.26354 1.21910 1.24556 0.82780 0.91655 0.92196 1.68033 1.40764 1.09780 1.12395 1.23615 1.02840 0.94667 0.97639 0.92152 0.89196 0.89226 0.76726 0.86581 0.90138 0.89158 0.87833 0.90871 0.90939 0.74863 0.82879 0.77585 0.89425 0.90597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.88 13.22 55.49 0.73 -25.14 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.14 29.55 -169.99 -5.02 16.11 16 4 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.54 -15.06 9.50 30.94 0.29 -14.77 16 8 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 9 S -0.06 -1.61 20.57 -107.50 -2.21 -3.82 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 11 C 0.53 9.31 7.85 -10.98 -0.09 9.22 16 12 O -0.52 -11.18 15.46 5.56 0.09 -11.10 16 13 N -0.73 -8.46 5.36 -53.02 -0.28 -8.74 16 14 C 0.13 1.19 4.24 -67.12 -0.28 0.91 16 15 C -0.13 -0.74 7.39 -25.92 -0.19 -0.93 16 16 C -0.12 -0.58 3.76 -89.80 -0.34 -0.92 16 17 C 0.13 0.54 4.76 -4.04 -0.02 0.53 16 18 N -0.70 -3.89 5.71 -60.29 -0.34 -4.23 16 19 C 0.46 3.48 7.71 -154.76 -1.19 2.28 16 20 C -0.32 -2.30 9.39 -39.04 -0.37 -2.67 16 21 C 0.38 3.39 8.50 -17.06 -0.14 3.25 16 22 F -0.10 -0.92 17.30 2.25 0.04 -0.88 16 23 N -0.59 -5.47 10.45 -14.99 -0.16 -5.62 16 24 C 0.38 2.76 12.28 -92.21 -1.13 1.63 16 25 N -0.58 -4.80 10.47 -13.84 -0.14 -4.94 16 26 C -0.15 -1.10 7.43 -25.92 -0.19 -1.29 16 27 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 28 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 29 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 30 H 0.40 3.44 8.73 -40.82 -0.36 3.09 16 31 H 0.12 1.34 7.46 -51.93 -0.39 0.95 16 32 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.09 0.39 8.08 -51.93 -0.42 -0.03 16 34 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.30 7.67 -51.93 -0.40 -0.10 16 36 H 0.07 0.25 7.97 -51.93 -0.41 -0.17 16 37 H 0.41 2.14 8.60 -40.82 -0.35 1.79 16 38 H 0.15 0.79 6.86 -52.49 -0.36 0.43 16 39 H 0.21 0.74 8.06 -52.49 -0.42 0.32 16 40 H 0.09 0.64 7.90 -51.93 -0.41 0.23 16 41 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 372.02 15.07 5.61 5.61 Total: -1.00 -35.67 372.02 -10.41 -46.08 By element: Atomic # 1 Polarization: 5.41 SS G_CDS: -5.18 Total: 0.23 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: -3.53 Total: -3.55 kcal Atomic # 7 Polarization: -48.49 SS G_CDS: -0.20 Total: -48.68 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 9 Polarization: -0.92 SS G_CDS: 0.04 Total: -0.88 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.82 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.67 -10.41 -46.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112832602.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.686 kcal (2) G-P(sol) polarization free energy of solvation -35.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds