Wall clock time and date at job start Sat Apr 11 2020 05:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00025 * 2 1 4 4 H 1.48502 * 109.47017 * 269.99685 * 3 2 1 5 5 H 1.48501 * 109.47278 * 29.99549 * 3 2 1 6 6 H 1.48503 * 109.47133 * 149.99668 * 3 2 1 7 7 C 1.38799 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99649 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00232 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00245 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47153 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00116 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99913 * 180.02562 * 11 10 9 14 14 C 1.46488 * 119.99736 * 179.97438 * 13 11 10 15 15 C 1.53791 * 113.61417 * 204.99848 * 14 13 11 16 16 C 1.53786 * 87.08068 * 219.93754 * 15 14 13 17 17 C 1.52999 * 113.61029 * 139.98202 * 16 15 14 18 18 N 1.46506 * 109.46684 * 174.99939 * 17 16 15 19 19 C 1.38534 * 119.99733 * 180.02562 * 18 17 16 20 20 N 1.32455 * 119.19066 * 359.72310 * 19 18 17 21 21 C 1.32302 * 120.76607 * 179.75943 * 20 19 18 22 22 C 1.38782 * 119.16581 * 0.51095 * 21 20 19 23 23 F 1.35099 * 120.74159 * 179.76648 * 22 21 20 24 24 C 1.38788 * 118.51092 * 359.74453 * 22 21 20 25 25 N 1.32297 * 119.16463 * 0.02562 * 24 22 21 26 26 C 1.53780 * 87.08292 * 25.43218 * 16 15 14 27 27 H 0.96996 * 120.00186 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46993 * 59.99781 * 10 9 7 29 29 H 1.09001 * 109.47021 * 300.00397 * 10 9 7 30 30 H 0.96994 * 119.99654 * 0.02562 * 13 11 10 31 31 H 1.09005 * 112.85462 * 336.19123 * 14 13 11 32 32 H 1.08996 * 113.61313 * 105.38685 * 15 14 13 33 33 H 1.09005 * 113.60905 * 334.48499 * 15 14 13 34 34 H 1.08998 * 113.61117 * 270.79681 * 16 15 14 35 35 H 1.09000 * 109.47486 * 54.99874 * 17 16 15 36 36 H 1.09001 * 109.47362 * 294.99151 * 17 16 15 37 37 H 0.96995 * 120.00050 * 359.72237 * 18 17 16 38 38 H 1.07998 * 120.41609 * 180.27723 * 21 20 19 39 39 H 1.07994 * 120.41500 * 179.97438 * 24 22 21 40 40 H 1.08991 * 113.61583 * 89.11314 * 26 16 15 41 41 H 1.09000 * 113.61178 * 220.01907 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2325 0.0008 12 8 6.3440 -2.2963 0.0005 13 7 6.0457 -4.4948 0.0001 14 6 7.4907 -4.7357 -0.0006 15 6 7.8880 -6.0966 -0.5968 16 6 8.9343 -6.1945 0.5260 17 6 9.0608 -7.5966 1.1251 18 7 10.1578 -7.6156 2.0960 19 6 10.4644 -8.7853 2.7719 20 7 9.7518 -9.8758 2.5320 21 6 10.0206 -11.0109 3.1563 22 6 11.0565 -11.0463 4.0791 23 9 11.3554 -12.1870 4.7383 24 6 11.7787 -9.8837 4.3093 25 7 11.4591 -8.7843 3.6464 26 6 8.0312 -5.2549 1.3423 27 1 -0.4850 0.8400 -0.0004 28 1 3.6440 -3.4314 -0.8893 29 1 3.6433 -3.4318 0.8906 30 1 5.4291 -5.2435 -0.0007 31 1 8.0593 -3.8987 -0.4059 32 1 8.3227 -6.0262 -1.5938 33 1 7.1024 -6.8492 -0.5285 34 1 9.8979 -5.7576 0.2641 35 1 9.2662 -8.3141 0.3307 36 1 8.1293 -7.8639 1.6242 37 1 10.6722 -6.8103 2.2623 38 1 9.4388 -11.8977 2.9530 39 1 12.5908 -9.8764 5.0211 40 1 7.2849 -5.7774 1.9406 41 1 8.5816 -4.5051 1.9107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001112832615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:49 Heat of formation + Delta-G solvation = -5.854492 kcal Electronic energy + Delta-G solvation = -24824.770090 eV Core-core repulsion = 20781.473090 eV Total energy + Delta-G solvation = -4043.297000 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.32211 -41.41867 -40.22530 -38.47907 -36.13503 -34.33947 -33.43287 -32.45192 -31.02288 -29.42907 -27.48540 -26.05903 -25.64062 -25.47970 -23.69335 -22.58565 -20.54590 -20.14628 -18.83314 -18.40472 -17.87709 -17.82623 -16.70843 -16.53337 -16.37213 -15.80209 -15.39553 -15.34800 -15.04743 -14.97386 -14.92022 -14.51303 -14.00882 -13.92482 -13.57495 -13.42507 -12.84549 -12.81189 -12.76587 -12.48256 -12.28854 -11.95979 -11.62056 -11.50869 -11.27426 -11.04209 -11.00453 -10.93481 -10.62051 -10.48681 -9.86781 -9.67149 -9.53622 -9.03325 -8.97088 -8.51994 -8.50597 -6.93557 -6.30297 -4.02241 0.44967 0.46013 2.27720 2.75286 2.90928 3.21702 3.29444 3.33055 3.47208 3.49229 3.54004 3.64549 3.99963 4.11639 4.18510 4.29977 4.31717 4.36748 4.45875 4.55664 4.71535 4.79104 5.03745 5.07549 5.08812 5.23276 5.26637 5.36665 5.41440 5.54560 5.69063 5.69385 5.74820 5.76178 5.98515 6.04117 6.13959 6.45911 6.54615 6.85721 7.58210 7.68889 7.92701 8.40138 8.45660 9.15864 10.78918 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029165 B = 0.001513 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.817498 B =18501.357613 C =18733.431963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.096 3.904 3 Si 0.857 3.143 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.235 1.235 7 C -0.522 4.522 8 H 0.088 0.912 9 S -0.142 6.142 10 C -0.125 4.125 11 C 0.532 3.468 12 O -0.520 6.520 13 N -0.726 5.726 14 C 0.127 3.873 15 C -0.133 4.133 16 C -0.125 4.125 17 C 0.148 3.852 18 N -0.689 5.689 19 C 0.557 3.443 20 N -0.544 5.544 21 C 0.176 3.824 22 C -0.079 4.079 23 F -0.128 7.128 24 C 0.176 3.824 25 N -0.548 5.548 26 C -0.148 4.148 27 H 0.271 0.729 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.400 0.600 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.417 0.583 38 H 0.179 0.821 39 H 0.179 0.821 40 H 0.087 0.913 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.306 -24.020 4.654 33.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.517 5.517 2 C -0.113 4.113 3 Si 0.682 3.318 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.159 1.159 7 C -0.670 4.670 8 H 0.106 0.894 9 S 0.084 5.916 10 C -0.276 4.276 11 C 0.318 3.682 12 O -0.394 6.394 13 N -0.379 5.379 14 C 0.021 3.979 15 C -0.172 4.172 16 C -0.144 4.144 17 C 0.024 3.976 18 N -0.326 5.326 19 C 0.201 3.799 20 N -0.266 5.266 21 C 0.006 3.994 22 C -0.107 4.107 23 F -0.107 7.107 24 C 0.006 3.994 25 N -0.270 5.270 26 C -0.187 4.187 27 H 0.081 0.919 28 H 0.115 0.885 29 H 0.115 0.885 30 H 0.235 0.765 31 H 0.134 0.866 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.119 0.881 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.255 0.745 38 H 0.196 0.804 39 H 0.196 0.804 40 H 0.106 0.894 41 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 24.003 -21.463 4.011 32.448 hybrid contribution -0.658 -1.435 0.682 1.719 sum 23.345 -22.897 4.693 33.035 Atomic orbital electron populations 1.69937 1.05915 1.27777 1.48030 1.24712 0.94449 0.98962 0.93161 0.86733 0.81889 0.83280 0.79933 1.19203 1.19928 1.15941 1.22319 0.88273 0.97546 1.58838 0.89389 1.84786 1.09294 1.00074 1.97430 1.23292 0.94080 1.04410 1.05815 1.20330 0.90575 0.82469 0.74828 1.90691 1.58785 1.42243 1.47699 1.45942 1.06925 1.08007 1.77057 1.22370 0.82041 0.97277 0.96212 1.23324 0.98196 0.97353 0.98354 1.22642 0.99175 0.94775 0.97834 1.21395 0.89050 0.96523 0.90609 1.44247 1.36846 1.08385 1.43079 1.19423 0.86184 0.87073 0.87261 1.68006 1.30603 0.98800 1.29207 1.23147 0.91902 0.96052 0.88305 1.19125 1.03635 0.85498 1.02407 1.91519 1.92800 1.47130 1.79257 1.23113 0.96208 0.85668 0.94402 1.67967 1.18531 1.29485 1.10999 1.23603 0.98813 0.98774 0.97499 0.91933 0.88474 0.88463 0.76543 0.86647 0.90229 0.89072 0.88078 0.91079 0.90936 0.74490 0.80427 0.80446 0.89405 0.90746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.44 13.97 55.49 0.78 -25.67 16 2 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 3 Si 0.86 21.69 27.74 -169.99 -4.72 16.97 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.27 16 5 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 6 H -0.24 -5.95 6.74 56.52 0.38 -5.57 16 7 C -0.52 -14.96 10.04 30.94 0.31 -14.65 16 8 H 0.09 2.62 8.03 -52.49 -0.42 2.20 16 9 S -0.14 -3.57 18.55 -107.50 -1.99 -5.56 16 10 C -0.13 -2.36 6.16 36.00 0.22 -2.14 16 11 C 0.53 9.03 7.85 -10.98 -0.09 8.95 16 12 O -0.52 -10.85 15.46 5.56 0.09 -10.77 16 13 N -0.73 -8.41 5.36 -53.01 -0.28 -8.70 16 14 C 0.13 1.21 4.24 -67.11 -0.28 0.93 16 15 C -0.13 -0.83 7.39 -25.91 -0.19 -1.02 16 16 C -0.12 -0.71 3.75 -89.81 -0.34 -1.05 16 17 C 0.15 0.89 5.49 -4.04 -0.02 0.87 16 18 N -0.69 -4.81 5.71 -62.29 -0.36 -5.17 16 19 C 0.56 4.83 8.43 -322.72 -2.72 2.11 16 20 N -0.54 -4.56 9.58 -13.87 -0.13 -4.70 16 21 C 0.18 1.15 11.29 -17.15 -0.19 0.95 16 22 C -0.08 -0.52 7.38 -39.18 -0.29 -0.81 16 23 F -0.13 -0.88 17.30 2.25 0.04 -0.84 16 24 C 0.18 1.16 11.29 -17.15 -0.19 0.96 16 25 N -0.55 -4.67 10.46 -13.87 -0.14 -4.81 16 26 C -0.15 -1.18 7.43 -25.91 -0.19 -1.37 16 27 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 28 H 0.10 1.69 8.14 -51.92 -0.42 1.27 16 29 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 30 H 0.40 3.51 8.73 -40.82 -0.36 3.15 16 31 H 0.12 1.33 7.46 -51.93 -0.39 0.94 16 32 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 33 H 0.09 0.48 8.08 -51.93 -0.42 0.06 16 34 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.49 7.84 -51.93 -0.41 0.08 16 37 H 0.42 2.52 8.59 -40.82 -0.35 2.17 16 38 H 0.18 0.64 8.06 -52.49 -0.42 0.22 16 39 H 0.18 0.64 8.06 -52.49 -0.42 0.21 16 40 H 0.09 0.71 7.90 -51.93 -0.41 0.30 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -35.33 371.21 -10.50 -45.83 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -5.29 Total: 1.38 kcal Atomic # 6 Polarization: 0.50 SS G_CDS: -4.07 Total: -3.57 kcal Atomic # 7 Polarization: -48.89 SS G_CDS: -0.14 Total: -49.04 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.77 kcal Atomic # 9 Polarization: -0.88 SS G_CDS: 0.04 Total: -0.84 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.72 Total: 16.97 kcal Atomic # 16 Polarization: -3.57 SS G_CDS: -1.99 Total: -5.56 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -35.33 -10.50 -45.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112832615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.972 kcal (2) G-P(sol) polarization free energy of solvation -35.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds