Wall clock time and date at job start Sat Apr 11 2020 05:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 120.00025 * 2 1 4 4 H 1.48502 * 109.47017 * 269.99685 * 3 2 1 5 5 H 1.48501 * 109.47278 * 29.99549 * 3 2 1 6 6 H 1.48503 * 109.47133 * 149.99668 * 3 2 1 7 7 C 1.38799 * 120.00100 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99649 * 0.02562 * 7 2 1 9 9 S 1.76198 * 120.00232 * 180.02562 * 7 2 1 10 10 C 1.80998 * 100.00245 * 180.02562 * 9 7 2 11 11 C 1.50697 * 109.47153 * 179.97438 * 10 9 7 12 12 O 1.21277 * 120.00116 * 359.97438 * 11 10 9 13 13 N 1.34787 * 119.99913 * 180.02562 * 11 10 9 14 14 C 1.46488 * 119.99736 * 179.97438 * 13 11 10 15 15 C 1.53791 * 113.61417 * 204.99848 * 14 13 11 16 16 C 1.53786 * 87.08068 * 219.93754 * 15 14 13 17 17 C 1.52999 * 113.61029 * 139.98202 * 16 15 14 18 18 N 1.46506 * 109.46684 * 174.99939 * 17 16 15 19 19 C 1.38534 * 119.99733 * 180.02562 * 18 17 16 20 20 N 1.32455 * 119.19066 * 359.72310 * 19 18 17 21 21 C 1.32302 * 120.76607 * 179.75943 * 20 19 18 22 22 C 1.38782 * 119.16581 * 0.51095 * 21 20 19 23 23 F 1.35099 * 120.74159 * 179.76648 * 22 21 20 24 24 C 1.38788 * 118.51092 * 359.74453 * 22 21 20 25 25 N 1.32297 * 119.16463 * 0.02562 * 24 22 21 26 26 C 1.53780 * 87.08292 * 25.43218 * 16 15 14 27 27 H 0.96996 * 120.00186 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.46993 * 59.99781 * 10 9 7 29 29 H 1.09001 * 109.47021 * 300.00397 * 10 9 7 30 30 H 0.96994 * 119.99654 * 0.02562 * 13 11 10 31 31 H 1.09005 * 112.85462 * 336.19123 * 14 13 11 32 32 H 1.08996 * 113.61313 * 105.38685 * 15 14 13 33 33 H 1.09005 * 113.60905 * 334.48499 * 15 14 13 34 34 H 1.08998 * 113.61117 * 270.79681 * 16 15 14 35 35 H 1.09000 * 109.47486 * 54.99874 * 17 16 15 36 36 H 1.09001 * 109.47362 * 294.99151 * 17 16 15 37 37 H 0.96995 * 120.00050 * 359.72237 * 18 17 16 38 38 H 1.07998 * 120.41609 * 180.27723 * 21 20 19 39 39 H 1.07994 * 120.41500 * 179.97438 * 24 22 21 40 40 H 1.08991 * 113.61583 * 89.11314 * 26 16 15 41 41 H 1.09000 * 113.61178 * 220.01907 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0463 -1.4001 5 1 1.4477 2.6527 0.6999 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0005 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9845 0.0009 11 6 5.5731 -3.2325 0.0008 12 8 6.3440 -2.2963 0.0005 13 7 6.0457 -4.4948 0.0001 14 6 7.4907 -4.7357 -0.0006 15 6 7.8880 -6.0966 -0.5968 16 6 8.9343 -6.1945 0.5260 17 6 9.0608 -7.5966 1.1251 18 7 10.1578 -7.6156 2.0960 19 6 10.4644 -8.7853 2.7719 20 7 9.7518 -9.8758 2.5320 21 6 10.0206 -11.0109 3.1563 22 6 11.0565 -11.0463 4.0791 23 9 11.3554 -12.1870 4.7383 24 6 11.7787 -9.8837 4.3093 25 7 11.4591 -8.7843 3.6464 26 6 8.0312 -5.2549 1.3423 27 1 -0.4850 0.8400 -0.0004 28 1 3.6440 -3.4314 -0.8893 29 1 3.6433 -3.4318 0.8906 30 1 5.4291 -5.2435 -0.0007 31 1 8.0593 -3.8987 -0.4059 32 1 8.3227 -6.0262 -1.5938 33 1 7.1024 -6.8492 -0.5285 34 1 9.8979 -5.7576 0.2641 35 1 9.2662 -8.3141 0.3307 36 1 8.1293 -7.8639 1.6242 37 1 10.6722 -6.8103 2.2623 38 1 9.4388 -11.8977 2.9530 39 1 12.5908 -9.8764 5.0211 40 1 7.2849 -5.7774 1.9406 41 1 8.5816 -4.5051 1.9107 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001112832615.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:55:48 Heat of formation + Delta-G solvation = -29.278943 kcal Electronic energy + Delta-G solvation = -24825.785851 eV Core-core repulsion = 20781.473090 eV Total energy + Delta-G solvation = -4044.312761 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 340.111 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.83244 -41.94160 -41.14179 -39.53649 -36.74221 -34.86539 -34.68576 -34.50539 -31.68431 -30.69876 -28.18255 -27.82159 -26.64998 -26.00109 -24.30538 -23.30025 -21.69799 -20.85281 -19.82890 -19.36500 -18.89215 -18.38035 -17.89245 -17.45658 -17.07942 -17.05703 -16.53318 -16.43442 -16.03240 -15.80514 -15.67666 -15.46094 -15.05333 -14.94079 -14.71261 -14.62975 -14.06055 -13.82297 -13.39233 -13.34991 -13.29187 -13.04789 -12.98160 -12.80532 -12.71235 -12.18419 -12.05661 -11.85759 -11.65353 -11.51009 -11.17371 -11.07499 -10.91152 -10.53625 -10.20749 -10.01313 -9.02240 -8.99664 -8.51854 -6.22641 -0.06349 -0.04108 0.99760 1.31108 1.46858 1.56151 1.56852 1.78370 2.23887 2.30456 2.68128 2.72536 2.86459 2.98494 3.07231 3.48825 3.51162 3.70635 3.80151 3.83069 3.86162 3.93168 3.95453 4.24754 4.27404 4.47370 4.50105 4.64241 4.73002 4.80598 4.86978 4.89714 5.05866 5.12882 5.25066 5.34183 5.60753 5.64597 5.70336 5.97350 6.11017 6.34277 6.51454 6.93431 7.16423 7.22918 8.60499 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.029165 B = 0.001513 C = 0.001494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.817498 B =18501.357613 C =18733.431963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.046 3.954 3 Si 0.915 3.085 4 H -0.262 1.262 5 H -0.259 1.259 6 H -0.237 1.237 7 C -0.530 4.530 8 H 0.062 0.938 9 S -0.177 6.177 10 C -0.113 4.113 11 C 0.535 3.465 12 O -0.565 6.565 13 N -0.701 5.701 14 C 0.110 3.890 15 C -0.117 4.117 16 C -0.106 4.106 17 C 0.155 3.845 18 N -0.688 5.688 19 C 0.542 3.458 20 N -0.559 5.559 21 C 0.174 3.826 22 C -0.083 4.083 23 F -0.129 7.129 24 C 0.173 3.827 25 N -0.568 5.568 26 C -0.146 4.146 27 H 0.277 0.723 28 H 0.114 0.886 29 H 0.112 0.888 30 H 0.417 0.583 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.075 0.925 36 H 0.068 0.932 37 H 0.420 0.580 38 H 0.204 0.796 39 H 0.203 0.797 40 H 0.090 0.910 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.780 -25.600 4.609 35.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.159 4.159 3 Si 0.736 3.264 4 H -0.187 1.187 5 H -0.184 1.184 6 H -0.161 1.161 7 C -0.678 4.678 8 H 0.080 0.920 9 S 0.049 5.951 10 C -0.264 4.264 11 C 0.321 3.679 12 O -0.443 6.443 13 N -0.354 5.354 14 C 0.005 3.995 15 C -0.156 4.156 16 C -0.125 4.125 17 C 0.032 3.968 18 N -0.325 5.325 19 C 0.185 3.815 20 N -0.282 5.282 21 C 0.005 3.995 22 C -0.111 4.111 23 F -0.109 7.109 24 C 0.004 3.996 25 N -0.290 5.290 26 C -0.184 4.184 27 H 0.086 0.914 28 H 0.132 0.868 29 H 0.131 0.869 30 H 0.255 0.745 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.093 0.907 36 H 0.086 0.914 37 H 0.258 0.742 38 H 0.221 0.779 39 H 0.220 0.780 40 H 0.108 0.892 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 25.478 -23.108 3.969 34.625 hybrid contribution -1.074 -1.153 0.725 1.734 sum 24.404 -24.261 4.695 34.731 Atomic orbital electron populations 1.70015 1.07299 1.29016 1.49133 1.25561 0.95265 1.02242 0.92875 0.85865 0.80653 0.79611 0.80223 1.18661 1.18356 1.16128 1.22472 0.90307 0.96696 1.58281 0.91961 1.84710 1.06375 1.06420 1.97589 1.23296 0.96195 0.99470 1.07414 1.19981 0.89243 0.83722 0.74959 1.90681 1.59302 1.43947 1.50383 1.45756 1.08433 1.06536 1.74651 1.22632 0.80137 0.98514 0.98215 1.23282 0.98453 0.95034 0.98808 1.22504 0.99187 0.94115 0.96743 1.21331 0.88626 0.96442 0.90440 1.44305 1.36966 1.08184 1.43000 1.19690 0.86525 0.87619 0.87649 1.68053 1.31015 0.99218 1.29947 1.23597 0.91874 0.96377 0.87659 1.19167 1.03844 0.85484 1.02557 1.91516 1.92836 1.47196 1.79313 1.23553 0.96548 0.85223 0.94246 1.68013 1.18998 1.30334 1.11666 1.23575 0.99190 0.98968 0.96698 0.91376 0.86811 0.86941 0.74547 0.88687 0.89218 0.87402 0.87137 0.90699 0.91369 0.74165 0.77908 0.78011 0.89165 0.91814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.69 13.97 21.65 0.30 -55.39 16 2 C 0.05 2.69 5.50 84.86 0.47 3.16 16 3 Si 0.91 44.92 27.74 68.60 1.90 46.82 16 4 H -0.26 -12.54 7.11 99.48 0.71 -11.83 16 5 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 6 H -0.24 -11.65 6.74 99.48 0.67 -10.98 16 7 C -0.53 -30.76 10.04 67.95 0.68 -30.08 16 8 H 0.06 3.80 8.03 -2.91 -0.02 3.78 16 9 S -0.18 -8.91 18.55 -56.49 -1.05 -9.95 16 10 C -0.11 -4.13 6.16 71.23 0.44 -3.70 16 11 C 0.54 17.61 7.85 87.65 0.69 18.29 16 12 O -0.56 -23.49 15.46 -3.02 -0.05 -23.54 16 13 N -0.70 -14.84 5.36 -440.02 -2.36 -17.20 16 14 C 0.11 1.91 4.24 45.53 0.19 2.11 16 15 C -0.12 -1.11 7.39 31.13 0.23 -0.88 16 16 C -0.11 -0.96 3.75 -10.27 -0.04 -0.99 16 17 C 0.16 1.53 5.49 86.38 0.47 2.00 16 18 N -0.69 -8.59 5.71 -350.97 -2.00 -10.60 16 19 C 0.54 8.74 8.43 261.46 2.20 10.94 16 20 N -0.56 -8.56 9.58 -197.78 -1.90 -10.46 16 21 C 0.17 1.99 11.29 84.75 0.96 2.95 16 22 C -0.08 -0.98 7.38 22.53 0.17 -0.81 16 23 F -0.13 -1.59 17.30 44.97 0.78 -0.81 16 24 C 0.17 2.05 11.29 84.75 0.96 3.01 16 25 N -0.57 -9.07 10.46 -197.78 -2.07 -11.14 16 26 C -0.15 -2.07 7.43 31.12 0.23 -1.83 16 27 H 0.28 15.55 8.31 -92.71 -0.77 14.78 16 28 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 29 H 0.11 3.79 8.14 -2.39 -0.02 3.77 16 30 H 0.42 6.10 8.73 -92.71 -0.81 5.29 16 31 H 0.10 2.13 7.46 -2.38 -0.02 2.11 16 32 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 33 H 0.11 0.72 8.08 -2.38 -0.02 0.70 16 34 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 0.77 7.84 -2.39 -0.02 0.75 16 37 H 0.42 4.54 8.59 -92.71 -0.80 3.74 16 38 H 0.20 1.03 8.06 -2.91 -0.02 1.01 16 39 H 0.20 1.11 8.06 -2.91 -0.02 1.09 16 40 H 0.09 1.27 7.90 -2.39 -0.02 1.25 16 41 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -77.44 371.21 0.66 -76.78 By element: Atomic # 1 Polarization: 11.87 SS G_CDS: -0.55 Total: 11.31 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 7.65 Total: 4.17 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -8.02 Total: -104.78 kcal Atomic # 8 Polarization: -23.49 SS G_CDS: -0.05 Total: -23.54 kcal Atomic # 9 Polarization: -1.59 SS G_CDS: 0.78 Total: -0.81 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.90 Total: 46.82 kcal Atomic # 16 Polarization: -8.91 SS G_CDS: -1.05 Total: -9.95 kcal Total: -77.44 0.66 -76.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001112832615.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.497 kcal (2) G-P(sol) polarization free energy of solvation -77.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds