Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 120.00578 * 2 1 4 4 H 1.48496 * 109.47224 * 269.99740 * 3 2 1 5 5 H 1.48504 * 109.47070 * 29.99403 * 3 2 1 6 6 H 1.48494 * 109.47376 * 149.99254 * 3 2 1 7 7 C 1.38951 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00327 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99760 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99892 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00134 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00152 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47270 * 179.97438 * 12 10 9 14 14 C 1.38099 * 119.99989 * 179.97438 * 13 12 10 15 15 N 1.32886 * 120.81291 * 359.97438 * 14 13 12 16 16 C 1.32100 * 121.17709 * 179.97438 * 15 14 13 17 17 N 1.31554 * 122.63374 * 359.97438 * 16 15 14 18 18 C 1.33088 * 120.68834 * 0.02562 * 17 16 15 19 19 C 1.40784 * 120.81395 * 179.97438 * 14 13 12 20 20 C 1.41259 * 134.69216 * 0.02562 * 19 14 13 21 21 N 1.30233 * 108.55281 * 180.02562 * 20 19 14 22 22 N 1.36758 * 134.63899 * 180.02562 * 18 17 16 23 23 C 1.39235 * 125.90679 * 359.96730 * 22 18 17 24 24 N 1.32385 * 119.19537 * 359.78578 * 23 22 18 25 25 C 1.32264 * 120.75015 * 179.72184 * 24 23 22 26 26 C 1.38619 * 119.18318 * 0.53753 * 25 24 23 27 27 C 1.38633 * 118.52692 * 359.73687 * 26 25 24 28 28 N 1.32266 * 119.17769 * 0.02562 * 27 26 25 29 29 H 0.97001 * 119.99657 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00409 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47097 * 59.99385 * 12 10 9 32 32 H 1.09002 * 109.47182 * 299.99751 * 12 10 9 33 33 H 0.96993 * 119.99832 * 359.97438 * 13 12 10 34 34 H 1.07999 * 118.68553 * 179.97438 * 16 15 14 35 35 H 1.08005 * 125.72425 * 0.02562 * 20 19 14 36 36 H 1.08003 * 120.40789 * 180.27760 * 25 24 23 37 37 H 1.08000 * 120.73981 * 179.75549 * 26 25 24 38 38 H 1.07993 * 120.40732 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4457 2.6527 0.6999 6 1 3.5456 1.4401 0.7002 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0030 12 6 1.2435 -4.8630 0.0010 13 7 2.1954 -5.9765 0.0017 14 6 1.7350 -7.2785 0.0019 15 7 0.4321 -7.5398 0.0019 16 6 -0.0162 -8.7824 0.0016 17 7 0.7851 -9.8257 0.0007 18 6 2.1065 -9.6672 0.0007 19 6 2.6345 -8.3615 0.0021 20 6 4.0418 -8.4842 0.0026 21 7 4.3474 -9.7501 0.0019 22 7 3.1765 -10.5189 -0.0005 23 6 3.1130 -11.9098 -0.0015 24 7 1.9290 -12.5022 0.0030 25 6 1.8328 -13.8213 -0.0032 26 6 2.9907 -14.5835 -0.0033 27 6 4.2134 -13.9301 -0.0024 28 7 4.2379 -12.6077 -0.0010 29 1 -0.4850 0.8401 -0.0004 30 1 0.3532 -2.3907 0.0005 31 1 0.6178 -4.9208 -0.8896 32 1 0.6158 -4.9205 0.8903 33 1 3.1490 -5.7993 0.0021 34 1 -1.0834 -8.9485 0.0021 35 1 4.7461 -7.6654 0.0033 36 1 0.8641 -14.2988 -0.0040 37 1 2.9414 -15.6624 -0.0044 38 1 5.1344 -14.4940 -0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117127381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = 158.003339 kcal Electronic energy + Delta-G solvation = -27122.608767 eV Core-core repulsion = 23003.185937 eV Total energy + Delta-G solvation = -4119.422830 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.34446 -41.18893 -39.19119 -38.46124 -36.12196 -34.31738 -34.13740 -33.96341 -32.31878 -31.47048 -30.67837 -30.33143 -27.44061 -25.25368 -25.04956 -24.57735 -24.08903 -22.68044 -21.36123 -19.84492 -19.33127 -18.24484 -17.97927 -17.49900 -17.00864 -16.71005 -16.50431 -16.11497 -15.44571 -15.27741 -15.10580 -14.62499 -14.56061 -14.43902 -14.26384 -14.14591 -13.86124 -13.54720 -13.50782 -12.53805 -12.35430 -11.68115 -11.66162 -11.55053 -11.42659 -11.28126 -11.16733 -10.72718 -10.63697 -10.49908 -10.36513 -9.77352 -9.68898 -9.55608 -9.17048 -8.94441 -8.72654 -8.17403 -8.01788 -6.57320 -3.99450 0.11238 0.71404 0.92092 1.41051 1.43502 2.27796 2.99085 3.07909 3.19574 3.25006 3.44420 3.45120 3.65721 3.68936 3.89809 4.03385 4.15429 4.20534 4.28034 4.44168 4.56309 4.69468 4.70965 4.79971 4.88894 5.11240 5.16799 5.34660 5.65019 5.76529 5.84807 5.86040 5.99068 6.12643 6.35176 6.64063 6.84461 7.00561 7.06899 7.40833 7.58604 7.77583 7.86573 8.30005 8.37703 8.98490 9.31837 9.79132 10.59266 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.035984 B = 0.001949 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.936407 B =14365.624702 C =15128.415170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.027 3.973 3 Si 0.933 3.067 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.268 1.268 7 C -0.306 4.306 8 H 0.106 0.894 9 N -0.545 5.545 10 C 0.424 3.576 11 O -0.598 6.598 12 C 0.114 3.886 13 N -0.664 5.664 14 C 0.521 3.479 15 N -0.600 5.600 16 C 0.389 3.611 17 N -0.554 5.554 18 C 0.396 3.604 19 C -0.333 4.333 20 C 0.131 3.869 21 N -0.231 5.231 22 N -0.325 5.325 23 C 0.566 3.434 24 N -0.507 5.507 25 C 0.180 3.820 26 C -0.256 4.256 27 C 0.175 3.825 28 N -0.517 5.517 29 H 0.275 0.725 30 H 0.396 0.604 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.424 0.576 34 H 0.205 0.795 35 H 0.208 0.792 36 H 0.178 0.822 37 H 0.153 0.847 38 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 -25.608 -0.011 25.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.176 4.176 3 Si 0.760 3.240 4 H -0.202 1.202 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.436 4.436 8 H 0.124 0.876 9 N -0.180 5.180 10 C 0.209 3.791 11 O -0.485 6.485 12 C -0.014 4.014 13 N -0.295 5.295 14 C 0.267 3.733 15 N -0.329 5.329 16 C 0.097 3.903 17 N -0.280 5.280 18 C 0.151 3.849 19 C -0.351 4.351 20 C -0.068 4.068 21 N -0.042 5.042 22 N -0.112 5.112 23 C 0.212 3.788 24 N -0.226 5.226 25 C 0.013 3.987 26 C -0.279 4.279 27 C 0.008 3.992 28 N -0.234 5.234 29 H 0.085 0.915 30 H 0.230 0.770 31 H 0.108 0.892 32 H 0.108 0.892 33 H 0.265 0.735 34 H 0.222 0.778 35 H 0.224 0.776 36 H 0.195 0.805 37 H 0.171 0.829 38 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.404 -25.323 0.003 25.361 hybrid contribution 0.263 0.648 -0.013 0.700 sum 1.666 -24.674 -0.009 24.730 Atomic orbital electron populations 1.69607 1.06015 1.28630 1.48998 1.25333 0.95679 0.99981 0.96636 0.85806 0.79252 0.80420 0.78533 1.20230 1.20760 1.19291 1.19735 0.93493 0.81935 1.48402 0.87618 1.41779 1.09515 1.04438 1.62241 1.19712 0.88308 0.84991 0.86054 1.90510 1.13674 1.86737 1.57603 1.21086 0.91385 0.85028 1.03896 1.44441 1.11071 1.00909 1.73074 1.17961 0.87765 0.84374 0.83198 1.68157 1.12469 1.24563 1.27747 1.24785 0.99839 0.80817 0.84875 1.67673 1.00053 1.35412 1.24908 1.18688 0.88520 0.86134 0.91594 1.19480 0.95434 0.94577 1.25587 1.24105 0.93798 0.94791 0.94101 1.77427 1.02140 1.02719 1.21898 1.44732 1.02940 1.01303 1.62176 1.18382 0.85545 0.83006 0.91889 1.67942 1.25537 1.12551 1.16525 1.23175 0.99719 0.87212 0.88609 1.22898 0.94768 1.03317 1.06963 1.23172 0.98800 0.88338 0.88908 1.67858 1.29899 1.08840 1.16813 0.91515 0.76968 0.89205 0.89195 0.73464 0.77832 0.77592 0.80495 0.82877 0.80647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.10 13.05 55.50 0.72 -22.38 16 2 C 0.03 0.68 5.50 -17.47 -0.10 0.59 16 3 Si 0.93 20.06 29.55 -169.99 -5.02 15.04 16 4 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 5 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 6 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 7 C -0.31 -8.05 9.68 -14.93 -0.14 -8.19 16 8 H 0.11 2.91 7.16 -52.48 -0.38 2.53 16 9 N -0.55 -12.86 5.29 -10.96 -0.06 -12.92 16 10 C 0.42 9.11 7.85 -10.99 -0.09 9.02 16 11 O -0.60 -14.55 15.24 5.54 0.08 -14.46 16 12 C 0.11 1.87 6.21 -5.19 -0.03 1.83 16 13 N -0.66 -10.13 5.65 -61.27 -0.35 -10.47 16 14 C 0.52 7.73 7.55 -154.85 -1.17 6.56 16 15 N -0.60 -8.58 9.69 -13.62 -0.13 -8.71 16 16 C 0.39 4.93 12.24 -92.10 -1.13 3.81 16 17 N -0.55 -8.16 9.94 -13.89 -0.14 -8.30 16 18 C 0.40 6.22 7.75 -155.92 -1.21 5.02 16 19 C -0.33 -4.89 6.14 -106.80 -0.66 -5.54 16 20 C 0.13 1.71 11.86 -17.08 -0.20 1.51 16 21 N -0.23 -3.47 12.22 30.82 0.38 -3.09 16 22 N -0.33 -5.15 3.81 -13.08 -0.05 -5.20 16 23 C 0.57 8.20 8.44 -321.88 -2.72 5.48 16 24 N -0.51 -6.50 9.48 -13.77 -0.13 -6.63 16 25 C 0.18 1.44 11.30 -17.22 -0.19 1.24 16 26 C -0.26 -1.52 10.17 -39.30 -0.40 -1.92 16 27 C 0.17 1.39 11.30 -17.22 -0.19 1.19 16 28 N -0.52 -6.61 10.23 -13.77 -0.14 -6.75 16 29 H 0.27 6.73 8.31 -40.82 -0.34 6.40 16 30 H 0.40 8.93 7.90 -40.82 -0.32 8.61 16 31 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 32 H 0.09 1.39 8.14 -51.93 -0.42 0.97 16 33 H 0.42 6.43 7.30 -40.82 -0.30 6.13 16 34 H 0.21 1.73 8.06 -52.49 -0.42 1.31 16 35 H 0.21 1.92 8.06 -52.48 -0.42 1.50 16 36 H 0.18 0.76 8.06 -52.48 -0.42 0.33 16 37 H 0.15 0.32 8.06 -52.49 -0.42 -0.10 16 38 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 348.72 15.07 5.26 5.26 Total: -1.00 -34.62 348.72 -10.90 -45.52 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -3.09 Total: 12.51 kcal Atomic # 6 Polarization: 28.82 SS G_CDS: -8.23 Total: 20.59 kcal Atomic # 7 Polarization: -84.55 SS G_CDS: 0.11 Total: -84.45 kcal Atomic # 8 Polarization: -14.55 SS G_CDS: 0.08 Total: -14.46 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -34.62 -10.90 -45.52 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117127381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.524 kcal (2) G-P(sol) polarization free energy of solvation -34.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 158.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds