Wall clock time and date at job start Sat Apr 11 2020 05:56:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86800 * 120.00578 * 2 1 4 4 H 1.48496 * 109.47224 * 269.99740 * 3 2 1 5 5 H 1.48504 * 109.47070 * 29.99403 * 3 2 1 6 6 H 1.48494 * 109.47376 * 149.99254 * 3 2 1 7 7 C 1.38951 * 119.99796 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00327 * 180.02562 * 7 2 1 9 9 N 1.37101 * 119.99760 * 0.02562 * 7 2 1 10 10 C 1.34778 * 119.99892 * 180.02562 * 9 7 2 11 11 O 1.21296 * 120.00134 * 0.02562 * 10 9 7 12 12 C 1.50697 * 120.00152 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.47270 * 179.97438 * 12 10 9 14 14 C 1.38099 * 119.99989 * 179.97438 * 13 12 10 15 15 N 1.32886 * 120.81291 * 359.97438 * 14 13 12 16 16 C 1.32100 * 121.17709 * 179.97438 * 15 14 13 17 17 N 1.31554 * 122.63374 * 359.97438 * 16 15 14 18 18 C 1.33088 * 120.68834 * 0.02562 * 17 16 15 19 19 C 1.40784 * 120.81395 * 179.97438 * 14 13 12 20 20 C 1.41259 * 134.69216 * 0.02562 * 19 14 13 21 21 N 1.30233 * 108.55281 * 180.02562 * 20 19 14 22 22 N 1.36758 * 134.63899 * 180.02562 * 18 17 16 23 23 C 1.39235 * 125.90679 * 359.96730 * 22 18 17 24 24 N 1.32385 * 119.19537 * 359.78578 * 23 22 18 25 25 C 1.32264 * 120.75015 * 179.72184 * 24 23 22 26 26 C 1.38619 * 119.18318 * 0.53753 * 25 24 23 27 27 C 1.38633 * 118.52692 * 359.73687 * 26 25 24 28 28 N 1.32266 * 119.17769 * 0.02562 * 27 26 25 29 29 H 0.97001 * 119.99657 * 0.02562 * 1 2 3 30 30 H 0.96998 * 120.00409 * 359.97438 * 9 7 2 31 31 H 1.08995 * 109.47097 * 59.99385 * 12 10 9 32 32 H 1.09002 * 109.47182 * 299.99751 * 12 10 9 33 33 H 0.96993 * 119.99832 * 359.97438 * 13 12 10 34 34 H 1.07999 * 118.68553 * 179.97438 * 16 15 14 35 35 H 1.08005 * 125.72425 * 0.02562 * 20 19 14 36 36 H 1.08003 * 120.40789 * 180.27760 * 25 24 23 37 37 H 1.08000 * 120.73981 * 179.75549 * 26 25 24 38 38 H 1.07993 * 120.40732 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 2.4958 2.0463 -1.4000 5 1 1.4457 2.6527 0.6999 6 1 3.5456 1.4401 0.7002 7 6 2.0088 -1.2034 0.0005 8 1 3.0888 -1.2035 0.0010 9 7 1.3232 -2.3907 0.0005 10 6 1.9970 -3.5579 0.0016 11 8 3.2100 -3.5580 0.0030 12 6 1.2435 -4.8630 0.0010 13 7 2.1954 -5.9765 0.0017 14 6 1.7350 -7.2785 0.0019 15 7 0.4321 -7.5398 0.0019 16 6 -0.0162 -8.7824 0.0016 17 7 0.7851 -9.8257 0.0007 18 6 2.1065 -9.6672 0.0007 19 6 2.6345 -8.3615 0.0021 20 6 4.0418 -8.4842 0.0026 21 7 4.3474 -9.7501 0.0019 22 7 3.1765 -10.5189 -0.0005 23 6 3.1130 -11.9098 -0.0015 24 7 1.9290 -12.5022 0.0030 25 6 1.8328 -13.8213 -0.0032 26 6 2.9907 -14.5835 -0.0033 27 6 4.2134 -13.9301 -0.0024 28 7 4.2379 -12.6077 -0.0010 29 1 -0.4850 0.8401 -0.0004 30 1 0.3532 -2.3907 0.0005 31 1 0.6178 -4.9208 -0.8896 32 1 0.6158 -4.9205 0.8903 33 1 3.1490 -5.7993 0.0021 34 1 -1.0834 -8.9485 0.0021 35 1 4.7461 -7.6654 0.0033 36 1 0.8641 -14.2988 -0.0040 37 1 2.9414 -15.6624 -0.0044 38 1 5.1344 -14.4940 -0.0021 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117127381.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:02 Heat of formation + Delta-G solvation = 135.802647 kcal Electronic energy + Delta-G solvation = -27123.571461 eV Core-core repulsion = 23003.185937 eV Total energy + Delta-G solvation = -4120.385525 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.35511 -41.96531 -40.49985 -39.91539 -37.38077 -36.00078 -35.06360 -34.84585 -33.45720 -33.29920 -31.69637 -31.30129 -28.86409 -26.58365 -25.86188 -25.76455 -25.14282 -23.74793 -22.28420 -21.38953 -20.51715 -20.00807 -19.00516 -18.60057 -17.98463 -17.77050 -17.51273 -17.12495 -16.85175 -16.50464 -16.24147 -16.02604 -15.79456 -15.56415 -15.38473 -15.23323 -14.94117 -14.67936 -14.42259 -14.02599 -13.91542 -13.52139 -12.95168 -12.71295 -12.64464 -12.43472 -12.12182 -12.10979 -12.07097 -11.79287 -11.56979 -11.50964 -10.84669 -10.54080 -10.34780 -10.21210 -10.07655 -9.83380 -9.15343 -8.49430 -5.98816 -0.76246 -0.04660 0.08605 0.41882 0.49305 1.28103 1.37603 1.44310 1.55780 1.78663 1.93422 2.30632 2.62437 2.67533 2.81706 2.86957 3.03442 3.18434 3.25514 3.38574 3.47387 3.61491 3.72147 3.85336 4.15280 4.17258 4.26836 4.36921 4.49354 4.50514 4.74445 4.88447 5.09306 5.25007 5.40155 5.46127 5.60116 5.84135 5.95807 6.02959 6.08592 6.45946 6.50656 6.97759 7.06155 7.23438 7.46853 7.97558 8.67145 Molecular weight = 340.11amu Principal moments of inertia in cm(-1) A = 0.035984 B = 0.001949 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.936407 B =14365.624702 C =15128.415170 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.009 4.009 3 Si 0.993 3.007 4 H -0.271 1.271 5 H -0.272 1.272 6 H -0.272 1.272 7 C -0.336 4.336 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.430 3.570 11 O -0.626 6.626 12 C 0.132 3.868 13 N -0.668 5.668 14 C 0.519 3.481 15 N -0.609 5.609 16 C 0.390 3.610 17 N -0.565 5.565 18 C 0.377 3.623 19 C -0.342 4.342 20 C 0.135 3.865 21 N -0.254 5.254 22 N -0.336 5.336 23 C 0.527 3.473 24 N -0.536 5.536 25 C 0.165 3.835 26 C -0.222 4.222 27 C 0.160 3.840 28 N -0.547 5.547 29 H 0.279 0.721 30 H 0.400 0.600 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.424 0.576 34 H 0.244 0.756 35 H 0.237 0.763 36 H 0.213 0.787 37 H 0.203 0.797 38 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.214 -27.661 -0.024 27.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.210 4.210 3 Si 0.817 3.183 4 H -0.197 1.197 5 H -0.197 1.197 6 H -0.196 1.196 7 C -0.466 4.466 8 H 0.103 0.897 9 N -0.193 5.193 10 C 0.217 3.783 11 O -0.515 6.515 12 C 0.005 3.995 13 N -0.299 5.299 14 C 0.266 3.734 15 N -0.338 5.338 16 C 0.099 3.901 17 N -0.291 5.291 18 C 0.132 3.868 19 C -0.360 4.360 20 C -0.064 4.064 21 N -0.065 5.065 22 N -0.123 5.123 23 C 0.173 3.827 24 N -0.255 5.255 25 C 0.000 4.000 26 C -0.245 4.245 27 C -0.005 4.005 28 N -0.266 5.266 29 H 0.089 0.911 30 H 0.235 0.765 31 H 0.123 0.877 32 H 0.123 0.877 33 H 0.265 0.735 34 H 0.260 0.740 35 H 0.253 0.747 36 H 0.230 0.770 37 H 0.220 0.780 38 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 0.815 -27.461 -0.012 27.473 hybrid contribution 0.444 0.974 -0.009 1.071 sum 1.260 -26.487 -0.020 26.517 Atomic orbital electron populations 1.69665 1.06853 1.29557 1.49268 1.26062 0.96518 1.02507 0.95900 0.84915 0.77938 0.76808 0.78628 1.19686 1.19721 1.19620 1.19707 0.92928 0.83613 1.50310 0.89693 1.41811 1.09650 1.04500 1.63334 1.20522 0.88154 0.86093 0.83559 1.90490 1.15325 1.87550 1.58107 1.20883 0.90880 0.82470 1.05289 1.44312 1.10766 1.00788 1.74060 1.17983 0.88204 0.83974 0.83270 1.68209 1.12078 1.25375 1.28141 1.25589 1.01195 0.79944 0.83386 1.67742 0.99896 1.36166 1.25323 1.19000 0.89053 0.86707 0.92054 1.19610 0.96135 0.94296 1.25943 1.24583 0.93811 0.94973 0.92998 1.77340 1.02948 1.03408 1.22803 1.44944 1.02799 1.02225 1.62295 1.18584 0.86667 0.82779 0.94665 1.67913 1.25260 1.14889 1.17395 1.23955 1.02196 0.85969 0.87905 1.23404 0.93009 1.05410 1.02649 1.23955 1.01317 0.87044 0.88159 1.67826 1.29893 1.11108 1.17780 0.91108 0.76522 0.87701 0.87692 0.73513 0.74003 0.74707 0.77038 0.78021 0.77125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -47.15 13.05 21.66 0.28 -46.87 16 2 C -0.01 -0.45 5.50 84.93 0.47 0.01 16 3 Si 0.99 41.04 29.55 68.60 2.03 43.07 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 6 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 7 C -0.34 -17.98 9.68 84.04 0.81 -17.16 16 8 H 0.09 4.81 7.16 -2.91 -0.02 4.79 16 9 N -0.56 -26.59 5.29 -306.98 -1.62 -28.21 16 10 C 0.43 18.54 7.85 87.66 0.69 19.23 16 11 O -0.63 -30.88 15.24 -3.08 -0.05 -30.92 16 12 C 0.13 4.23 6.21 85.63 0.53 4.76 16 13 N -0.67 -20.05 5.65 -347.75 -1.97 -22.01 16 14 C 0.52 15.20 7.55 133.63 1.01 16.21 16 15 N -0.61 -16.76 9.69 -197.01 -1.91 -18.67 16 16 C 0.39 9.45 12.24 180.86 2.21 11.67 16 17 N -0.56 -16.52 9.94 -197.85 -1.97 -18.49 16 18 C 0.38 12.07 7.75 134.03 1.04 13.11 16 19 C -0.34 -10.14 6.14 -21.28 -0.13 -10.28 16 20 C 0.13 3.58 11.86 85.67 1.02 4.59 16 21 N -0.25 -7.87 12.22 -56.40 -0.69 -8.56 16 22 N -0.34 -10.96 3.81 -195.30 -0.74 -11.70 16 23 C 0.53 15.50 8.44 261.16 2.21 17.71 16 24 N -0.54 -13.51 9.48 -197.47 -1.87 -15.38 16 25 C 0.17 2.26 11.30 84.72 0.96 3.22 16 26 C -0.22 -1.86 10.17 22.46 0.23 -1.64 16 27 C 0.16 2.20 11.30 84.72 0.96 3.16 16 28 N -0.55 -13.95 10.23 -197.46 -2.02 -15.97 16 29 H 0.28 13.54 8.31 -92.71 -0.77 12.77 16 30 H 0.40 18.17 7.90 -92.71 -0.73 17.44 16 31 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 32 H 0.11 3.10 8.14 -2.39 -0.02 3.08 16 33 H 0.42 12.82 7.30 -92.71 -0.68 12.14 16 34 H 0.24 3.57 8.06 -2.91 -0.02 3.55 16 35 H 0.24 4.36 8.06 -2.91 -0.02 4.33 16 36 H 0.21 1.12 8.06 -2.91 -0.02 1.10 16 37 H 0.20 -0.32 8.06 -2.91 -0.02 -0.35 16 38 H 0.21 1.08 8.06 -2.91 -0.02 1.06 16 Total: -1.00 -78.14 348.72 1.23 -76.91 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: -0.24 Total: 32.20 kcal Atomic # 6 Polarization: 52.61 SS G_CDS: 12.00 Total: 64.61 kcal Atomic # 7 Polarization: -173.36 SS G_CDS: -12.51 Total: -185.86 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.05 Total: -30.92 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -78.14 1.23 -76.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117127381.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 212.712 kcal (2) G-P(sol) polarization free energy of solvation -78.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 135.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds