Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99628 * 2 1 4 4 H 1.48493 * 109.47147 * 269.99797 * 3 2 1 5 5 H 1.48498 * 109.46810 * 30.00167 * 3 2 1 6 6 H 1.48499 * 109.46659 * 149.99638 * 3 2 1 7 7 C 1.37871 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00359 * 186.61016 * 7 2 1 9 9 C 1.50708 * 119.99960 * 6.61662 * 7 2 1 10 10 C 1.52996 * 113.00117 * 65.39190 * 9 7 2 11 11 O 1.45210 * 109.47121 * 53.52073 * 10 9 7 12 12 C 1.34867 * 116.99715 * 180.02562 * 11 10 9 13 13 O 1.21580 * 120.00114 * 0.02562 * 12 11 10 14 14 C 1.46574 * 119.99611 * 179.97438 * 12 11 10 15 15 C 1.34742 * 119.99773 * 179.97438 * 14 12 11 16 16 C 1.47346 * 119.99769 * 180.02562 * 15 14 12 17 17 C 1.40958 * 119.79110 * 180.02562 * 16 15 14 18 18 N 1.31142 * 120.53536 * 179.72327 * 17 16 15 19 19 C 1.33867 * 119.87143 * 0.27642 * 18 17 16 20 20 C 1.40492 * 120.95092 * 179.97438 * 19 18 17 21 21 C 1.36123 * 119.76629 * 180.02562 * 20 19 18 22 22 C 1.39441 * 121.00657 * 0.03792 * 21 20 19 23 23 C 1.36025 * 120.96516 * 359.95639 * 22 21 20 24 24 C 1.40799 * 119.70398 * 0.02562 * 23 22 21 25 25 N 1.32430 * 119.79116 * 0.29568 * 16 15 14 26 26 C 1.54036 * 113.92564 * 197.32491 * 9 7 2 27 27 O 1.44178 * 85.51429 * 91.65883 * 26 9 7 28 28 C 1.44174 * 93.34190 * 24.19198 * 27 26 9 29 29 H 0.97001 * 120.00526 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47034 * 293.52612 * 10 9 7 31 31 H 1.08993 * 109.47672 * 173.52100 * 10 9 7 32 32 H 1.07998 * 120.00068 * 0.02562 * 14 12 11 33 33 H 1.07998 * 120.00159 * 0.02562 * 15 14 12 34 34 H 1.08000 * 119.72787 * 359.97438 * 17 16 15 35 35 H 1.07998 * 120.11787 * 359.97438 * 20 19 18 36 36 H 1.08004 * 119.49358 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.51785 * 179.97438 * 22 21 20 38 38 H 1.07990 * 120.14923 * 180.02562 * 23 22 21 39 39 H 1.08997 * 113.86200 * 205.80713 * 26 9 7 40 40 H 1.08996 * 113.86284 * 337.51132 * 26 9 7 41 41 H 1.09004 * 113.86141 * 221.65922 * 28 27 26 42 42 H 1.09001 * 113.98241 * 89.96816 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0792 -1.1970 0.1082 9 6 1.2586 -2.4949 -0.1493 10 6 0.5843 -2.6436 -1.5145 11 8 1.5660 -2.4367 -2.5644 12 6 1.1307 -2.5334 -3.8372 13 8 -0.0375 -2.7833 -4.0629 14 6 2.0660 -2.3360 -4.9484 15 6 1.6313 -2.4331 -6.2201 16 6 2.5716 -2.2353 -7.3372 17 6 2.1120 -2.3373 -8.6658 18 7 2.9351 -2.1587 -9.6711 19 6 4.2238 -1.8825 -9.4367 20 6 5.1253 -1.6874 -10.4964 21 6 6.4308 -1.4083 -10.2304 22 6 6.8919 -1.3127 -8.9179 23 6 6.0498 -1.4949 -7.8652 24 6 4.6922 -1.7849 -8.0999 25 7 3.8442 -1.9681 -7.0865 26 6 2.0678 -3.7323 0.2829 27 8 1.4702 -3.5300 1.5793 28 6 0.3356 -2.8230 1.0394 29 1 -0.4851 0.8400 -0.0004 30 1 -0.2106 -1.9038 -1.6096 31 1 0.1620 -3.6443 -1.6042 32 1 3.1036 -2.1137 -4.7479 33 1 0.5937 -2.6559 -6.4206 34 1 1.0728 -2.5604 -8.8574 35 1 4.7839 -1.7596 -11.5185 36 1 7.1199 -1.2587 -11.0484 37 1 7.9327 -1.0905 -8.7344 38 1 6.4210 -1.4174 -6.8541 39 1 1.7572 -4.6553 -0.2068 40 1 3.1471 -3.5812 0.2664 41 1 0.0411 -1.9507 1.6230 42 1 -0.5052 -3.4665 0.7803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123166064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -6.158632 kcal Electronic energy + Delta-G solvation = -27634.198285 eV Core-core repulsion = 23546.611699 eV Total energy + Delta-G solvation = -4087.586586 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.67662 -39.82733 -39.04997 -37.98166 -35.91559 -35.34217 -33.54295 -32.90726 -31.01262 -30.48221 -29.84235 -26.52902 -25.45211 -25.30374 -24.81499 -24.10786 -22.59727 -22.27283 -19.69345 -19.03654 -18.97295 -18.20292 -17.39279 -16.56952 -16.48207 -15.78653 -15.61778 -15.41234 -15.28971 -14.88262 -14.86560 -14.51742 -14.38160 -14.28365 -14.08332 -13.90739 -12.82488 -12.63250 -12.48222 -12.26223 -12.12153 -12.10936 -12.05694 -11.99644 -11.81964 -11.56636 -11.00759 -10.77077 -10.48519 -10.29073 -10.27249 -9.96264 -9.62662 -9.45085 -9.41993 -9.08316 -9.06231 -8.77013 -8.67695 -8.30842 -6.18389 -4.20867 -0.33859 0.06327 1.19849 1.71274 2.53325 3.20913 3.26608 3.33284 3.33909 3.36618 3.59539 3.74398 3.75713 3.90549 4.33537 4.38051 4.42050 4.66885 4.75343 4.83293 4.88806 5.01041 5.15093 5.17305 5.31282 5.46498 5.51674 5.69357 5.81706 5.85876 5.95479 6.02104 6.03323 6.17794 6.22842 6.29610 6.30682 6.38141 6.53337 6.94015 6.94636 7.09330 7.27734 7.28402 7.36172 7.38482 7.78363 8.15893 8.36785 8.76371 9.42993 10.90085 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.002448 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.293092 B =11436.520038 C =12130.978871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.067 3.933 3 Si 0.898 3.102 4 H -0.279 1.279 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.485 4.485 8 H 0.066 0.934 9 C 0.032 3.968 10 C 0.082 3.918 11 O -0.321 6.321 12 C 0.480 3.520 13 O -0.520 6.520 14 C -0.105 4.105 15 C -0.058 4.058 16 C 0.131 3.869 17 C 0.100 3.900 18 N -0.426 5.426 19 C 0.075 3.925 20 C -0.085 4.085 21 C -0.098 4.098 22 C -0.101 4.101 23 C -0.079 4.079 24 C 0.087 3.913 25 N -0.415 5.415 26 C 0.028 3.972 27 O -0.388 6.388 28 C 0.050 3.950 29 H 0.265 0.735 30 H 0.086 0.914 31 H 0.039 0.961 32 H 0.152 0.848 33 H 0.154 0.846 34 H 0.181 0.819 35 H 0.139 0.861 36 H 0.136 0.864 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.054 0.946 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.053 -3.704 -20.151 22.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.136 4.136 3 Si 0.726 3.274 4 H -0.205 1.205 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.523 4.523 8 H 0.085 0.915 9 C 0.032 3.968 10 C 0.008 3.992 11 O -0.235 6.235 12 C 0.326 3.674 13 O -0.412 6.412 14 C -0.127 4.127 15 C -0.078 4.078 16 C -0.021 4.021 17 C -0.076 4.076 18 N -0.139 5.139 19 C -0.049 4.049 20 C -0.104 4.104 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.099 4.099 24 C -0.039 4.039 25 N -0.130 5.130 26 C -0.049 4.049 27 O -0.307 6.307 28 C -0.027 4.027 29 H 0.074 0.926 30 H 0.105 0.895 31 H 0.057 0.943 32 H 0.169 0.831 33 H 0.172 0.828 34 H 0.198 0.802 35 H 0.157 0.843 36 H 0.153 0.847 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.118 0.882 42 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.856 -3.669 -19.982 22.162 hybrid contribution 0.070 0.962 -0.172 0.980 sum 8.925 -2.707 -20.154 22.208 Atomic orbital electron populations 1.69884 1.05927 1.27242 1.49623 1.24949 0.94937 0.99337 0.94362 0.86480 0.79936 0.82800 0.78220 1.20520 1.21204 1.19650 1.20560 0.93471 0.88292 1.49959 0.91538 1.21124 0.92687 0.94674 0.88359 1.23508 0.90982 0.98946 0.85737 1.86670 1.43064 1.79843 1.13902 1.21285 0.86960 0.74367 0.84829 1.90812 1.18994 1.45205 1.86205 1.22698 1.00898 0.98431 0.90646 1.22037 0.98349 0.97388 0.90044 1.21164 0.91030 0.95841 0.94079 1.24123 1.00972 0.94469 0.88013 1.68666 1.02248 1.08570 1.34372 1.19694 0.91804 0.99977 0.93437 1.20795 0.92312 0.98899 0.98423 1.21065 0.95536 0.97936 0.97301 1.21042 1.00476 0.98386 0.92179 1.20951 0.90228 0.97857 1.00824 1.19617 0.95209 0.99735 0.89349 1.68744 1.02285 1.08127 1.33809 1.24098 0.99284 0.97337 0.84192 1.89493 1.37241 1.77736 1.26212 1.23916 0.88518 0.94320 0.95914 0.92556 0.89534 0.94265 0.83082 0.82836 0.80189 0.84289 0.84658 0.84534 0.83879 0.92837 0.90340 0.88192 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.99 11.31 55.43 0.63 -23.36 16 2 C 0.07 1.76 5.25 -17.82 -0.09 1.67 16 3 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 4 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 5 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.49 -12.79 7.92 -34.44 -0.27 -13.06 16 8 H 0.07 1.76 7.82 -52.49 -0.41 1.35 16 9 C 0.03 0.77 0.62 -154.58 -0.10 0.67 16 10 C 0.08 1.88 4.68 37.16 0.17 2.05 16 11 O -0.32 -7.01 9.84 -40.95 -0.40 -7.41 16 12 C 0.48 9.22 7.90 34.09 0.27 9.49 16 13 O -0.52 -10.79 16.03 -19.33 -0.31 -11.10 16 14 C -0.10 -1.58 9.68 -37.46 -0.36 -1.95 16 15 C -0.06 -0.73 9.46 -37.12 -0.35 -1.08 16 16 C 0.13 1.57 6.71 -82.87 -0.56 1.01 16 17 C 0.10 1.03 10.95 -16.82 -0.18 0.84 16 18 N -0.43 -4.89 10.45 -10.45 -0.11 -4.99 16 19 C 0.07 0.84 6.59 -84.70 -0.56 0.28 16 20 C -0.08 -0.71 9.98 -39.49 -0.39 -1.11 16 21 C -0.10 -0.63 9.95 -39.89 -0.40 -1.03 16 22 C -0.10 -0.69 9.95 -39.93 -0.40 -1.08 16 23 C -0.08 -0.75 9.99 -39.41 -0.39 -1.14 16 24 C 0.09 1.04 6.59 -84.78 -0.56 0.48 16 25 N -0.41 -5.49 9.43 -7.50 -0.07 -5.56 16 26 C 0.03 0.60 8.35 37.61 0.31 0.91 16 27 O -0.39 -9.18 12.40 -35.23 -0.44 -9.62 16 28 C 0.05 1.18 7.91 37.61 0.30 1.48 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.09 2.20 7.21 -51.93 -0.37 1.83 16 31 H 0.04 0.83 8.04 -51.93 -0.42 0.41 16 32 H 0.15 2.22 7.41 -52.49 -0.39 1.83 16 33 H 0.15 1.66 7.52 -52.49 -0.39 1.27 16 34 H 0.18 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.14 0.93 8.06 -52.49 -0.42 0.51 16 36 H 0.14 0.46 8.06 -52.48 -0.42 0.04 16 37 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 38 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 39 H 0.05 1.02 8.03 -51.93 -0.42 0.61 16 40 H 0.08 1.63 8.09 -51.93 -0.42 1.21 16 41 H 0.10 2.52 7.36 -51.93 -0.38 2.14 16 42 H 0.05 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -31.75 370.98 -8.57 -40.32 By element: Atomic # 1 Polarization: 6.71 SS G_CDS: -4.88 Total: 1.83 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -3.56 Total: -1.55 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.45 Total: -33.92 kcal Atomic # 8 Polarization: -26.98 SS G_CDS: -1.15 Total: -28.13 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.75 -8.57 -40.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123166064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.159 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.318 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds