Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86805 * 119.99628 * 2 1 4 4 H 1.48493 * 109.47147 * 269.99797 * 3 2 1 5 5 H 1.48498 * 109.46810 * 30.00167 * 3 2 1 6 6 H 1.48499 * 109.46659 * 149.99638 * 3 2 1 7 7 C 1.37871 * 120.00307 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00359 * 186.61016 * 7 2 1 9 9 C 1.50708 * 119.99960 * 6.61662 * 7 2 1 10 10 C 1.52996 * 113.00117 * 65.39190 * 9 7 2 11 11 O 1.45210 * 109.47121 * 53.52073 * 10 9 7 12 12 C 1.34867 * 116.99715 * 180.02562 * 11 10 9 13 13 O 1.21580 * 120.00114 * 0.02562 * 12 11 10 14 14 C 1.46574 * 119.99611 * 179.97438 * 12 11 10 15 15 C 1.34742 * 119.99773 * 179.97438 * 14 12 11 16 16 C 1.47346 * 119.99769 * 180.02562 * 15 14 12 17 17 C 1.40958 * 119.79110 * 180.02562 * 16 15 14 18 18 N 1.31142 * 120.53536 * 179.72327 * 17 16 15 19 19 C 1.33867 * 119.87143 * 0.27642 * 18 17 16 20 20 C 1.40492 * 120.95092 * 179.97438 * 19 18 17 21 21 C 1.36123 * 119.76629 * 180.02562 * 20 19 18 22 22 C 1.39441 * 121.00657 * 0.03792 * 21 20 19 23 23 C 1.36025 * 120.96516 * 359.95639 * 22 21 20 24 24 C 1.40799 * 119.70398 * 0.02562 * 23 22 21 25 25 N 1.32430 * 119.79116 * 0.29568 * 16 15 14 26 26 C 1.54036 * 113.92564 * 197.32491 * 9 7 2 27 27 O 1.44178 * 85.51429 * 91.65883 * 26 9 7 28 28 C 1.44174 * 93.34190 * 24.19198 * 27 26 9 29 29 H 0.97001 * 120.00526 * 0.02562 * 1 2 3 30 30 H 1.09002 * 109.47034 * 293.52612 * 10 9 7 31 31 H 1.08993 * 109.47672 * 173.52100 * 10 9 7 32 32 H 1.07998 * 120.00068 * 0.02562 * 14 12 11 33 33 H 1.07998 * 120.00159 * 0.02562 * 15 14 12 34 34 H 1.08000 * 119.72787 * 359.97438 * 17 16 15 35 35 H 1.07998 * 120.11787 * 359.97438 * 20 19 18 36 36 H 1.08004 * 119.49358 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.51785 * 179.97438 * 22 21 20 38 38 H 1.07990 * 120.14923 * 180.02562 * 23 22 21 39 39 H 1.08997 * 113.86200 * 205.80713 * 26 9 7 40 40 H 1.08996 * 113.86284 * 337.51132 * 26 9 7 41 41 H 1.09004 * 113.86141 * 221.65922 * 28 27 26 42 42 H 1.09001 * 113.98241 * 89.96816 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4464 2.6526 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0792 -1.1970 0.1082 9 6 1.2586 -2.4949 -0.1493 10 6 0.5843 -2.6436 -1.5145 11 8 1.5660 -2.4367 -2.5644 12 6 1.1307 -2.5334 -3.8372 13 8 -0.0375 -2.7833 -4.0629 14 6 2.0660 -2.3360 -4.9484 15 6 1.6313 -2.4331 -6.2201 16 6 2.5716 -2.2353 -7.3372 17 6 2.1120 -2.3373 -8.6658 18 7 2.9351 -2.1587 -9.6711 19 6 4.2238 -1.8825 -9.4367 20 6 5.1253 -1.6874 -10.4964 21 6 6.4308 -1.4083 -10.2304 22 6 6.8919 -1.3127 -8.9179 23 6 6.0498 -1.4949 -7.8652 24 6 4.6922 -1.7849 -8.0999 25 7 3.8442 -1.9681 -7.0865 26 6 2.0678 -3.7323 0.2829 27 8 1.4702 -3.5300 1.5793 28 6 0.3356 -2.8230 1.0394 29 1 -0.4851 0.8400 -0.0004 30 1 -0.2106 -1.9038 -1.6096 31 1 0.1620 -3.6443 -1.6042 32 1 3.1036 -2.1137 -4.7479 33 1 0.5937 -2.6559 -6.4206 34 1 1.0728 -2.5604 -8.8574 35 1 4.7839 -1.7596 -11.5185 36 1 7.1199 -1.2587 -11.0484 37 1 7.9327 -1.0905 -8.7344 38 1 6.4210 -1.4174 -6.8541 39 1 1.7572 -4.6553 -0.2068 40 1 3.1471 -3.5812 0.2664 41 1 0.0411 -1.9507 1.6230 42 1 -0.5052 -3.4665 0.7803 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123166064.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = -25.474436 kcal Electronic energy + Delta-G solvation = -27635.035882 eV Core-core repulsion = 23546.611699 eV Total energy + Delta-G solvation = -4088.424182 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.45790 -41.47852 -40.76240 -38.70153 -37.45571 -36.26467 -34.88645 -34.53032 -31.96615 -31.66804 -31.11110 -27.75616 -27.18776 -26.96836 -26.11146 -25.36131 -23.50037 -23.29313 -21.05699 -20.73878 -19.79501 -19.09721 -18.75108 -18.22592 -17.45644 -17.39111 -17.26529 -16.74640 -16.27298 -16.24165 -16.19666 -16.00818 -15.77515 -15.48057 -15.17342 -14.70054 -14.51202 -14.09997 -13.86419 -13.57702 -13.26798 -13.23536 -12.91297 -12.89323 -12.78992 -12.75489 -12.68869 -12.61995 -12.35999 -11.90731 -11.77887 -11.37643 -11.30649 -11.21319 -10.90940 -10.70448 -10.29554 -10.19935 -9.79016 -9.50217 -8.19274 -6.26694 -1.21582 -0.66954 0.21476 0.90494 1.40218 1.42371 1.50979 1.69489 1.81959 2.09200 2.40284 2.73274 2.96213 3.00639 3.05114 3.11814 3.22656 3.48719 3.72696 3.84542 4.03830 4.06812 4.15146 4.17065 4.27214 4.27993 4.38899 4.46666 4.49251 4.58153 4.73763 4.80788 4.86776 4.94461 5.08901 5.13520 5.15472 5.19924 5.24149 5.34399 5.48428 5.50487 5.63723 5.70848 5.72761 6.13503 6.22832 6.56408 6.71074 6.80468 7.38864 8.87833 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.002448 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.293092 B =11436.520038 C =12130.978871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.026 3.974 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.501 4.501 8 H 0.057 0.943 9 C 0.016 3.984 10 C 0.093 3.907 11 O -0.337 6.337 12 C 0.482 3.518 13 O -0.543 6.543 14 C -0.141 4.141 15 C -0.011 4.011 16 C 0.106 3.894 17 C 0.105 3.895 18 N -0.441 5.441 19 C 0.061 3.939 20 C -0.100 4.100 21 C -0.079 4.079 22 C -0.086 4.086 23 C -0.101 4.101 24 C 0.058 3.942 25 N -0.435 5.435 26 C 0.037 3.963 27 O -0.402 6.402 28 C 0.055 3.945 29 H 0.264 0.736 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.150 0.850 33 H 0.173 0.827 34 H 0.215 0.785 35 H 0.155 0.845 36 H 0.176 0.824 37 H 0.171 0.829 38 H 0.144 0.856 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.895 -3.805 -22.871 25.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.175 4.175 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.538 4.538 8 H 0.075 0.925 9 C 0.015 3.985 10 C 0.019 3.981 11 O -0.252 6.252 12 C 0.330 3.670 13 O -0.436 6.436 14 C -0.162 4.162 15 C -0.030 4.030 16 C -0.046 4.046 17 C -0.071 4.071 18 N -0.153 5.153 19 C -0.063 4.063 20 C -0.119 4.119 21 C -0.099 4.099 22 C -0.106 4.106 23 C -0.121 4.121 24 C -0.068 4.068 25 N -0.150 5.150 26 C -0.039 4.039 27 O -0.322 6.322 28 C -0.022 4.022 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.167 0.833 33 H 0.190 0.810 34 H 0.231 0.769 35 H 0.173 0.827 36 H 0.193 0.807 37 H 0.189 0.811 38 H 0.162 0.838 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.704 -3.778 -22.704 25.383 hybrid contribution -0.331 0.995 0.442 1.138 sum 10.374 -2.783 -22.262 24.717 Atomic orbital electron populations 1.69976 1.06804 1.27626 1.50293 1.25571 0.95657 1.01930 0.94304 0.85672 0.79035 0.79688 0.78037 1.20535 1.20833 1.19203 1.20784 0.93272 0.89820 1.49936 0.92462 1.21192 0.93417 0.94897 0.89000 1.23193 0.90275 0.98729 0.85922 1.86658 1.42989 1.80583 1.14952 1.21856 0.87361 0.73279 0.84544 1.90783 1.19976 1.46675 1.86213 1.22392 1.00180 1.03460 0.90200 1.22285 0.99093 0.92488 0.89181 1.21194 0.90878 0.97910 0.94602 1.24572 1.02289 0.93278 0.86919 1.68739 1.02647 1.09371 1.34586 1.20136 0.92322 0.99805 0.94015 1.21117 0.92856 0.99473 0.98489 1.21570 0.95253 0.94785 0.98249 1.21500 1.01647 0.95794 0.91638 1.21167 0.89772 0.99134 1.01984 1.20002 0.96127 1.01142 0.89545 1.68663 1.03105 1.08073 1.35150 1.24196 0.99361 0.97452 0.82935 1.89464 1.37509 1.77763 1.27421 1.23828 0.89177 0.94034 0.95188 0.92713 0.92634 0.92644 0.83259 0.81023 0.76861 0.82702 0.80673 0.81112 0.83828 0.89876 0.89826 0.90642 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.19 11.31 21.45 0.24 -49.95 16 2 C 0.03 1.38 5.25 84.65 0.44 1.82 16 3 Si 0.95 43.40 29.54 68.60 2.03 45.42 16 4 H -0.28 -12.68 7.11 99.48 0.71 -11.98 16 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 6 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.50 -26.86 7.92 25.60 0.20 -26.66 16 8 H 0.06 3.09 7.82 -2.91 -0.02 3.07 16 9 C 0.02 0.75 0.62 -52.23 -0.03 0.72 16 10 C 0.09 4.34 4.68 71.98 0.34 4.67 16 11 O -0.34 -15.09 9.84 -57.80 -0.57 -15.66 16 12 C 0.48 18.94 7.90 70.00 0.55 19.49 16 13 O -0.54 -22.87 16.03 19.57 0.31 -22.55 16 14 C -0.14 -4.34 9.68 23.64 0.23 -4.11 16 15 C -0.01 -0.27 9.46 23.87 0.23 -0.04 16 16 C 0.11 2.50 6.71 42.12 0.28 2.78 16 17 C 0.10 2.02 10.95 85.46 0.94 2.96 16 18 N -0.44 -9.58 10.45 -186.99 -1.95 -11.53 16 19 C 0.06 1.30 6.59 40.31 0.27 1.57 16 20 C -0.10 -1.43 9.98 22.33 0.22 -1.20 16 21 C -0.08 -0.70 9.95 22.07 0.22 -0.48 16 22 C -0.09 -0.89 9.95 22.05 0.22 -0.67 16 23 C -0.10 -1.79 9.99 22.38 0.22 -1.56 16 24 C 0.06 1.36 6.59 40.46 0.27 1.63 16 25 N -0.43 -11.60 9.43 -177.64 -1.67 -13.28 16 26 C 0.04 1.56 8.35 72.27 0.60 2.17 16 27 O -0.40 -18.90 12.40 -148.98 -1.85 -20.74 16 28 C 0.05 2.58 7.91 72.27 0.57 3.15 16 29 H 0.26 14.03 8.31 -92.71 -0.77 13.26 16 30 H 0.06 2.91 7.21 -2.39 -0.02 2.90 16 31 H 0.06 2.35 8.04 -2.39 -0.02 2.33 16 32 H 0.15 4.60 7.41 -2.91 -0.02 4.58 16 33 H 0.17 3.50 7.52 -2.91 -0.02 3.48 16 34 H 0.21 2.33 8.06 -2.91 -0.02 2.31 16 35 H 0.16 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.18 0.19 8.06 -2.91 -0.02 0.17 16 37 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 38 H 0.14 2.39 8.06 -2.92 -0.02 2.36 16 39 H 0.08 3.02 8.03 -2.39 -0.02 3.00 16 40 H 0.08 3.41 8.09 -2.39 -0.02 3.39 16 41 H 0.08 3.91 7.36 -2.39 -0.02 3.89 16 42 H 0.07 2.95 8.10 -2.39 -0.02 2.93 16 Total: -1.00 -70.75 370.98 3.36 -67.38 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.05 Total: 14.69 kcal Atomic # 6 Polarization: 0.45 SS G_CDS: 5.77 Total: 6.22 kcal Atomic # 7 Polarization: -71.37 SS G_CDS: -3.39 Total: -74.76 kcal Atomic # 8 Polarization: -56.85 SS G_CDS: -2.10 Total: -58.96 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -70.75 3.36 -67.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123166064.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.908 kcal (2) G-P(sol) polarization free energy of solvation -70.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds