Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86791 * 120.00048 * 2 1 4 4 H 1.48504 * 109.47326 * 271.71902 * 3 2 1 5 5 H 1.48508 * 109.47262 * 31.71522 * 3 2 1 6 6 H 1.48495 * 109.47392 * 151.71592 * 3 2 1 7 7 C 1.37877 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00379 * 348.04236 * 7 2 1 9 9 C 1.50704 * 119.99679 * 168.03616 * 7 2 1 10 10 C 1.53008 * 112.99514 * 82.49611 * 9 7 2 11 11 O 1.45204 * 109.46863 * 53.88530 * 10 9 7 12 12 C 1.34863 * 116.99641 * 175.08399 * 11 10 9 13 13 O 1.21584 * 120.00214 * 5.20647 * 12 11 10 14 14 C 1.46568 * 120.00004 * 185.20422 * 12 11 10 15 15 C 1.34744 * 120.00197 * 204.94516 * 14 12 11 16 16 C 1.47341 * 119.99955 * 27.12131 * 15 14 12 17 17 C 1.40961 * 119.78933 * 187.20059 * 16 15 14 18 18 N 1.31145 * 120.53313 * 179.97438 * 17 16 15 19 19 C 1.33877 * 119.86735 * 359.97438 * 18 17 16 20 20 C 1.40499 * 120.93809 * 179.97438 * 19 18 17 21 21 C 1.36116 * 119.75979 * 180.02562 * 20 19 18 22 22 C 1.39441 * 121.00858 * 0.04270 * 21 20 19 23 23 C 1.36025 * 120.96393 * 359.95526 * 22 21 20 24 24 C 1.40794 * 119.70365 * 0.02562 * 23 22 21 25 25 N 1.32435 * 119.79305 * 6.91834 * 16 15 14 26 26 C 1.54036 * 113.92829 * 214.42459 * 9 7 2 27 27 O 1.44174 * 85.51510 * 91.66242 * 26 9 7 28 28 C 1.44181 * 93.33956 * 24.19229 * 27 26 9 29 29 H 0.96992 * 119.99656 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.46904 * 293.88557 * 10 9 7 31 31 H 1.09001 * 109.46647 * 173.88064 * 10 9 7 32 32 H 1.08000 * 120.00162 * 24.94161 * 14 12 11 33 33 H 1.08000 * 120.00124 * 207.12188 * 15 14 12 34 34 H 1.08002 * 119.73499 * 359.97438 * 17 16 15 35 35 H 1.07993 * 120.11530 * 359.97438 * 20 19 18 36 36 H 1.08010 * 119.49320 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.51998 * 179.97438 * 22 21 20 38 38 H 1.07994 * 120.14390 * 180.02562 * 23 22 21 39 39 H 1.08994 * 113.86398 * 205.81185 * 26 9 7 40 40 H 1.08998 * 113.86228 * 337.52079 * 26 9 7 41 41 H 1.09005 * 113.86417 * 221.65610 * 28 27 26 42 42 H 1.09003 * 113.98195 * 89.96899 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4604 2.0674 -1.3995 5 1 1.4653 2.6419 0.7360 6 1 3.5644 1.4299 0.6634 7 6 2.0046 -1.1941 -0.0005 8 1 1.4822 -2.1193 0.1928 9 6 3.4871 -1.2081 -0.2711 10 6 4.3240 -0.8866 0.9688 11 8 3.9500 -1.7805 2.0502 12 6 4.6676 -1.6972 3.1891 13 8 5.5177 -0.8365 3.3106 14 6 4.4226 -2.6444 4.2805 15 6 4.7258 -2.3043 5.5485 16 6 4.7237 -0.8872 5.9518 17 6 5.1872 -0.5227 7.2322 18 7 5.1922 0.7343 7.6060 19 6 4.7547 1.6813 6.7668 20 6 4.7497 3.0346 7.1442 21 6 4.2991 3.9775 6.2721 22 6 3.8393 3.6224 5.0045 23 6 3.8286 2.3229 4.6026 24 6 4.2872 1.3186 5.4764 25 7 4.2917 0.0367 5.1070 26 6 3.9697 -2.4512 -1.0421 27 8 3.7530 -1.6602 -2.2279 28 6 3.8984 -0.4108 -1.5231 29 1 -0.4849 0.8400 0.0004 30 1 4.1439 0.1449 1.2712 31 1 5.3811 -1.0183 0.7377 32 1 3.9989 -3.6149 4.0684 33 1 4.9705 -3.0705 6.2693 34 1 5.5410 -1.2848 7.9108 35 1 5.1012 3.3255 8.1230 36 1 4.2975 5.0167 6.5665 37 1 3.4867 4.3902 4.3318 38 1 3.4700 2.0627 3.6177 39 1 5.0154 -2.7019 -0.8642 40 1 3.3031 -3.3094 -0.9567 41 1 3.1754 0.3493 -1.8192 42 1 4.9217 -0.0366 -1.4911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001123166065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = 28.740287 kcal Electronic energy + Delta-G solvation = -29390.900640 eV Core-core repulsion = 25304.827385 eV Total energy + Delta-G solvation = -4086.073256 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43604 -39.94593 -39.24705 -37.69887 -35.93626 -34.90819 -33.46641 -32.80938 -30.79783 -30.64975 -30.03336 -26.39671 -25.85668 -25.28549 -24.55064 -24.15487 -22.57017 -22.24695 -19.72715 -19.07087 -18.70717 -18.07482 -17.34071 -16.76856 -16.21149 -16.10647 -15.66466 -15.38011 -15.17119 -15.03979 -14.70582 -14.60854 -14.40279 -13.90839 -13.85107 -13.69604 -13.35291 -12.89428 -12.71610 -12.27129 -12.15595 -11.97593 -11.87905 -11.84333 -11.77502 -11.57318 -10.87611 -10.54265 -10.45992 -10.32384 -10.16049 -10.02096 -9.74406 -9.41598 -9.15074 -9.10144 -8.80952 -8.68345 -8.52047 -8.36616 -6.20633 -4.16677 -0.11343 0.31419 1.28213 1.96866 2.77760 3.11490 3.16990 3.24772 3.31695 3.38188 3.80752 3.99064 4.01623 4.13675 4.25903 4.52702 4.57973 4.64654 4.85139 4.98377 5.01169 5.12328 5.14721 5.22810 5.36626 5.51740 5.66738 5.78812 5.80870 5.88135 5.89751 5.94884 6.00238 6.02437 6.09071 6.18138 6.25054 6.31745 6.43779 6.57482 6.65157 6.96985 7.01250 7.19926 7.22027 7.57310 7.68008 8.34852 8.45083 8.85716 9.40418 10.92083 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.004219 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.326999 B = 6634.761153 C = 8044.485240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.080 3.920 3 Si 0.850 3.150 4 H -0.273 1.273 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.482 4.482 8 H 0.085 0.915 9 C -0.005 4.005 10 C 0.063 3.937 11 O -0.322 6.322 12 C 0.489 3.511 13 O -0.505 6.505 14 C -0.118 4.118 15 C -0.055 4.055 16 C 0.113 3.887 17 C 0.096 3.904 18 N -0.432 5.432 19 C 0.078 3.922 20 C -0.091 4.091 21 C -0.094 4.094 22 C -0.107 4.107 23 C -0.070 4.070 24 C 0.091 3.909 25 N -0.383 5.383 26 C 0.041 3.959 27 O -0.370 6.370 28 C 0.022 3.978 29 H 0.266 0.734 30 H 0.076 0.924 31 H 0.043 0.957 32 H 0.158 0.842 33 H 0.160 0.840 34 H 0.176 0.824 35 H 0.138 0.862 36 H 0.135 0.865 37 H 0.136 0.864 38 H 0.140 0.860 39 H 0.058 0.942 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.385 1.290 14.736 18.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.124 4.124 3 Si 0.679 3.321 4 H -0.200 1.200 5 H -0.213 1.213 6 H -0.172 1.172 7 C -0.519 4.519 8 H 0.103 0.897 9 C -0.006 4.006 10 C -0.010 4.010 11 O -0.237 6.237 12 C 0.333 3.667 13 O -0.395 6.395 14 C -0.140 4.140 15 C -0.075 4.075 16 C -0.039 4.039 17 C -0.080 4.080 18 N -0.145 5.145 19 C -0.046 4.046 20 C -0.111 4.111 21 C -0.114 4.114 22 C -0.127 4.127 23 C -0.090 4.090 24 C -0.035 4.035 25 N -0.097 5.097 26 C -0.035 4.035 27 O -0.289 6.289 28 C -0.055 4.055 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.062 0.938 32 H 0.176 0.824 33 H 0.177 0.823 34 H 0.193 0.807 35 H 0.156 0.844 36 H 0.153 0.847 37 H 0.154 0.846 38 H 0.158 0.842 39 H 0.076 0.924 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 10.328 1.873 14.418 17.834 hybrid contribution 0.489 1.077 0.096 1.187 sum 10.817 2.951 14.515 18.341 Atomic orbital electron populations 1.69898 1.06129 1.27055 1.49004 1.24885 0.94595 0.98583 0.94289 0.87597 0.81413 0.84666 0.78427 1.20009 1.21294 1.17231 1.20279 0.87579 0.95594 1.48478 0.89720 1.21615 0.98090 0.92318 0.88566 1.23996 0.96927 0.93680 0.86446 1.86703 1.55174 1.59200 1.22604 1.21277 0.79681 0.82259 0.83465 1.90795 1.33724 1.33188 1.81817 1.22739 0.98883 1.00819 0.91542 1.22103 0.96942 0.91837 0.96605 1.21231 0.96584 0.94532 0.91588 1.24006 0.95059 0.94009 0.94892 1.68606 1.12151 1.00842 1.32896 1.19640 0.98666 0.94766 0.91535 1.20731 0.99980 0.89824 1.00524 1.21034 0.97010 0.99946 0.93440 1.21032 0.98849 0.96249 0.96531 1.21028 0.96900 0.91436 0.99618 1.19569 0.98939 0.91737 0.93268 1.68919 1.09764 1.00092 1.30898 1.23957 0.98268 0.96772 0.84545 1.89561 1.92300 1.17160 1.29859 1.24246 0.98970 0.89663 0.92636 0.92419 0.90623 0.93831 0.82435 0.82293 0.80735 0.84449 0.84745 0.84632 0.84227 0.92442 0.89460 0.89420 0.92310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.30 13.96 55.43 0.77 -25.52 16 2 C 0.08 2.22 5.34 -17.82 -0.10 2.13 16 3 Si 0.85 20.25 24.17 -169.99 -4.11 16.14 16 4 H -0.27 -6.34 6.59 56.52 0.37 -5.97 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.25 -5.51 4.54 56.52 0.26 -5.25 16 7 C -0.48 -13.13 8.58 -34.44 -0.30 -13.43 16 8 H 0.08 2.52 8.06 -52.49 -0.42 2.10 16 9 C 0.00 -0.11 0.51 -154.58 -0.08 -0.19 16 10 C 0.06 1.37 4.61 37.16 0.17 1.54 16 11 O -0.32 -6.80 9.85 -40.94 -0.40 -7.20 16 12 C 0.49 9.10 6.58 34.09 0.22 9.33 16 13 O -0.51 -10.42 13.91 -19.33 -0.27 -10.69 16 14 C -0.12 -1.57 10.06 -37.46 -0.38 -1.95 16 15 C -0.06 -0.61 9.79 -37.12 -0.36 -0.97 16 16 C 0.11 1.60 6.15 -82.87 -0.51 1.09 16 17 C 0.10 1.14 10.95 -16.81 -0.18 0.95 16 18 N -0.43 -5.96 10.45 -10.45 -0.11 -6.07 16 19 C 0.08 1.15 6.59 -84.70 -0.56 0.59 16 20 C -0.09 -1.07 9.98 -39.49 -0.39 -1.47 16 21 C -0.09 -0.98 9.95 -39.90 -0.40 -1.37 16 22 C -0.11 -1.30 9.95 -39.93 -0.40 -1.70 16 23 C -0.07 -1.12 9.99 -39.41 -0.39 -1.52 16 24 C 0.09 1.54 6.59 -84.79 -0.56 0.98 16 25 N -0.38 -6.83 6.65 -7.50 -0.05 -6.88 16 26 C 0.04 0.86 8.35 37.61 0.31 1.17 16 27 O -0.37 -8.50 12.40 -35.23 -0.44 -8.94 16 28 C 0.02 0.48 6.86 37.60 0.26 0.74 16 29 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 30 H 0.08 1.75 4.71 -51.93 -0.24 1.51 16 31 H 0.04 0.86 8.01 -51.93 -0.42 0.45 16 32 H 0.16 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 34 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 36 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 37 H 0.14 1.33 8.06 -52.49 -0.42 0.90 16 38 H 0.14 2.44 8.06 -52.49 -0.42 2.01 16 39 H 0.06 1.02 8.04 -51.93 -0.42 0.60 16 40 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 41 H 0.09 2.05 4.65 -51.93 -0.24 1.80 16 42 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 LS Contribution 354.84 15.07 5.35 5.35 Total: -1.00 -35.49 354.84 -7.74 -43.24 By element: Atomic # 1 Polarization: 9.49 SS G_CDS: -4.85 Total: 4.64 kcal Atomic # 6 Polarization: -0.43 SS G_CDS: -3.64 Total: -4.07 kcal Atomic # 7 Polarization: -39.08 SS G_CDS: 0.61 Total: -38.47 kcal Atomic # 8 Polarization: -25.72 SS G_CDS: -1.11 Total: -26.83 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.11 Total: 16.14 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -35.49 -7.74 -43.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123166065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.975 kcal (2) G-P(sol) polarization free energy of solvation -35.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds