Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31524 * 1 3 3 Si 1.86791 * 120.00048 * 2 1 4 4 H 1.48504 * 109.47326 * 271.71902 * 3 2 1 5 5 H 1.48508 * 109.47262 * 31.71522 * 3 2 1 6 6 H 1.48495 * 109.47392 * 151.71592 * 3 2 1 7 7 C 1.37877 * 119.99805 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00379 * 348.04236 * 7 2 1 9 9 C 1.50704 * 119.99679 * 168.03616 * 7 2 1 10 10 C 1.53008 * 112.99514 * 82.49611 * 9 7 2 11 11 O 1.45204 * 109.46863 * 53.88530 * 10 9 7 12 12 C 1.34863 * 116.99641 * 175.08399 * 11 10 9 13 13 O 1.21584 * 120.00214 * 5.20647 * 12 11 10 14 14 C 1.46568 * 120.00004 * 185.20422 * 12 11 10 15 15 C 1.34744 * 120.00197 * 204.94516 * 14 12 11 16 16 C 1.47341 * 119.99955 * 27.12131 * 15 14 12 17 17 C 1.40961 * 119.78933 * 187.20059 * 16 15 14 18 18 N 1.31145 * 120.53313 * 179.97438 * 17 16 15 19 19 C 1.33877 * 119.86735 * 359.97438 * 18 17 16 20 20 C 1.40499 * 120.93809 * 179.97438 * 19 18 17 21 21 C 1.36116 * 119.75979 * 180.02562 * 20 19 18 22 22 C 1.39441 * 121.00858 * 0.04270 * 21 20 19 23 23 C 1.36025 * 120.96393 * 359.95526 * 22 21 20 24 24 C 1.40794 * 119.70365 * 0.02562 * 23 22 21 25 25 N 1.32435 * 119.79305 * 6.91834 * 16 15 14 26 26 C 1.54036 * 113.92829 * 214.42459 * 9 7 2 27 27 O 1.44174 * 85.51510 * 91.66242 * 26 9 7 28 28 C 1.44181 * 93.33956 * 24.19229 * 27 26 9 29 29 H 0.96992 * 119.99656 * 359.97438 * 1 2 3 30 30 H 1.08993 * 109.46904 * 293.88557 * 10 9 7 31 31 H 1.09001 * 109.46647 * 173.88064 * 10 9 7 32 32 H 1.08000 * 120.00162 * 24.94161 * 14 12 11 33 33 H 1.08000 * 120.00124 * 207.12188 * 15 14 12 34 34 H 1.08002 * 119.73499 * 359.97438 * 17 16 15 35 35 H 1.07993 * 120.11530 * 359.97438 * 20 19 18 36 36 H 1.08010 * 119.49320 * 180.02562 * 21 20 19 37 37 H 1.07998 * 119.51998 * 179.97438 * 22 21 20 38 38 H 1.07994 * 120.14390 * 180.02562 * 23 22 21 39 39 H 1.08994 * 113.86398 * 205.81185 * 26 9 7 40 40 H 1.08998 * 113.86228 * 337.52079 * 26 9 7 41 41 H 1.09005 * 113.86417 * 221.65610 * 28 27 26 42 42 H 1.09003 * 113.98195 * 89.96899 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4604 2.0674 -1.3995 5 1 1.4653 2.6419 0.7360 6 1 3.5644 1.4299 0.6634 7 6 2.0046 -1.1941 -0.0005 8 1 1.4822 -2.1193 0.1928 9 6 3.4871 -1.2081 -0.2711 10 6 4.3240 -0.8866 0.9688 11 8 3.9500 -1.7805 2.0502 12 6 4.6676 -1.6972 3.1891 13 8 5.5177 -0.8365 3.3106 14 6 4.4226 -2.6444 4.2805 15 6 4.7258 -2.3043 5.5485 16 6 4.7237 -0.8872 5.9518 17 6 5.1872 -0.5227 7.2322 18 7 5.1922 0.7343 7.6060 19 6 4.7547 1.6813 6.7668 20 6 4.7497 3.0346 7.1442 21 6 4.2991 3.9775 6.2721 22 6 3.8393 3.6224 5.0045 23 6 3.8286 2.3229 4.6026 24 6 4.2872 1.3186 5.4764 25 7 4.2917 0.0367 5.1070 26 6 3.9697 -2.4512 -1.0421 27 8 3.7530 -1.6602 -2.2279 28 6 3.8984 -0.4108 -1.5231 29 1 -0.4849 0.8400 0.0004 30 1 4.1439 0.1449 1.2712 31 1 5.3811 -1.0183 0.7377 32 1 3.9989 -3.6149 4.0684 33 1 4.9705 -3.0705 6.2693 34 1 5.5410 -1.2848 7.9108 35 1 5.1012 3.3255 8.1230 36 1 4.2975 5.0167 6.5665 37 1 3.4867 4.3902 4.3318 38 1 3.4700 2.0627 3.6177 39 1 5.0154 -2.7019 -0.8642 40 1 3.3031 -3.3094 -0.9567 41 1 3.1754 0.3493 -1.8192 42 1 4.9217 -0.0366 -1.4911 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001123166065.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = 3.114814 kcal Electronic energy + Delta-G solvation = -29392.011844 eV Core-core repulsion = 25304.827385 eV Total energy + Delta-G solvation = -4087.184460 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.44245 -41.59715 -40.78062 -38.69759 -37.35976 -36.01794 -34.89366 -34.47366 -32.53512 -31.71779 -31.08059 -27.81867 -27.50297 -26.91213 -26.15912 -25.29853 -23.77308 -23.30183 -21.11311 -20.72247 -19.74513 -19.09928 -18.74040 -18.38200 -17.92667 -17.67852 -16.98476 -16.92275 -16.36063 -16.26152 -16.17168 -15.92792 -15.72903 -15.46025 -14.97910 -14.84426 -14.73804 -14.45417 -14.20826 -13.81860 -13.56884 -13.18061 -12.90679 -12.83336 -12.79217 -12.73984 -12.61220 -12.42630 -12.21627 -12.14052 -11.91692 -11.39026 -11.32813 -10.94302 -10.89952 -10.58235 -10.42981 -10.16952 -9.79268 -9.38635 -8.38128 -6.37770 -1.12890 -0.64236 0.27666 0.93930 1.17694 1.24039 1.30181 1.74715 1.99956 2.12745 2.21930 2.74658 2.90383 2.99696 3.08262 3.12118 3.15604 3.52200 3.58936 3.77041 3.98071 4.01032 4.08147 4.10749 4.21906 4.24077 4.29820 4.32841 4.38115 4.54369 4.58178 4.63823 4.79151 4.81716 4.92254 4.94132 5.04676 5.11688 5.22004 5.26515 5.29887 5.31100 5.55820 5.66144 5.73711 6.20486 6.22673 6.62373 6.67106 6.98815 7.22797 8.78409 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012440 B = 0.004219 C = 0.003480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2250.326999 B = 6634.761153 C = 8044.485240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.025 3.975 3 Si 0.904 3.096 4 H -0.257 1.257 5 H -0.290 1.290 6 H -0.228 1.228 7 C -0.482 4.482 8 H 0.042 0.958 9 C -0.018 4.018 10 C 0.073 3.927 11 O -0.344 6.344 12 C 0.482 3.518 13 O -0.533 6.533 14 C -0.153 4.153 15 C -0.018 4.018 16 C 0.089 3.911 17 C 0.109 3.891 18 N -0.443 5.443 19 C 0.060 3.940 20 C -0.091 4.091 21 C -0.083 4.083 22 C -0.093 4.093 23 C -0.115 4.115 24 C 0.058 3.942 25 N -0.433 5.433 26 C 0.051 3.949 27 O -0.390 6.390 28 C 0.025 3.975 29 H 0.266 0.734 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.190 0.810 33 H 0.226 0.774 34 H 0.230 0.770 35 H 0.165 0.835 36 H 0.180 0.820 37 H 0.158 0.842 38 H 0.105 0.895 39 H 0.098 0.902 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.234 1.678 17.367 21.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.174 4.174 3 Si 0.730 3.270 4 H -0.182 1.182 5 H -0.217 1.217 6 H -0.152 1.152 7 C -0.519 4.519 8 H 0.060 0.940 9 C -0.019 4.019 10 C -0.001 4.001 11 O -0.260 6.260 12 C 0.328 3.672 13 O -0.425 6.425 14 C -0.175 4.175 15 C -0.036 4.036 16 C -0.064 4.064 17 C -0.068 4.068 18 N -0.156 5.156 19 C -0.063 4.063 20 C -0.110 4.110 21 C -0.103 4.103 22 C -0.113 4.113 23 C -0.135 4.135 24 C -0.068 4.068 25 N -0.147 5.147 26 C -0.025 4.025 27 O -0.309 6.309 28 C -0.052 4.052 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.084 0.916 32 H 0.207 0.793 33 H 0.243 0.757 34 H 0.246 0.754 35 H 0.183 0.817 36 H 0.197 0.803 37 H 0.176 0.824 38 H 0.123 0.877 39 H 0.115 0.885 40 H 0.101 0.899 41 H 0.090 0.910 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 13.196 2.268 17.046 21.676 hybrid contribution -0.401 0.894 -0.586 1.142 sum 12.795 3.161 16.460 21.086 Atomic orbital electron populations 1.70041 1.07986 1.27950 1.51476 1.25661 0.95266 1.02305 0.94141 0.86691 0.80960 0.80053 0.79268 1.18248 1.21679 1.15237 1.20407 0.90116 0.93908 1.47500 0.93981 1.21574 0.95567 0.94811 0.89994 1.23675 0.97574 0.92749 0.86150 1.86710 1.56483 1.59186 1.23640 1.22285 0.78825 0.82574 0.83493 1.90765 1.34979 1.34758 1.81976 1.22953 1.02586 1.01040 0.90877 1.22923 0.92353 0.91526 0.96811 1.22011 0.96405 0.95531 0.92439 1.24814 0.92996 0.94487 0.94481 1.68711 1.12681 1.01564 1.32606 1.19992 0.98890 0.96429 0.90942 1.21154 0.99276 0.88761 1.01837 1.21480 0.95007 1.01906 0.91892 1.21387 0.97025 0.95107 0.97774 1.20989 1.00161 0.93439 0.98886 1.19820 1.00496 0.91806 0.94641 1.68861 1.11615 1.01266 1.32997 1.24073 1.00352 0.95490 0.82604 1.89535 1.92754 1.17832 1.30778 1.24327 1.00701 0.89067 0.91066 0.92470 0.92762 0.91643 0.79316 0.75741 0.75379 0.81744 0.80261 0.82413 0.87654 0.88465 0.89937 0.91044 0.88319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.74 13.96 21.45 0.30 -58.44 16 2 C 0.02 1.44 5.34 84.65 0.45 1.89 16 3 Si 0.90 43.35 24.17 68.60 1.66 45.01 16 4 H -0.26 -11.55 6.59 99.48 0.66 -10.89 16 5 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 6 H -0.23 -10.18 4.54 99.48 0.45 -9.73 16 7 C -0.48 -27.52 8.58 25.60 0.22 -27.30 16 8 H 0.04 2.68 8.06 -2.91 -0.02 2.66 16 9 C -0.02 -0.85 0.51 -52.23 -0.03 -0.88 16 10 C 0.07 3.17 4.61 71.98 0.33 3.50 16 11 O -0.34 -14.94 9.85 -57.76 -0.57 -15.51 16 12 C 0.48 18.16 6.58 69.99 0.46 18.62 16 13 O -0.53 -22.44 13.91 19.56 0.27 -22.17 16 14 C -0.15 -3.86 10.06 23.64 0.24 -3.62 16 15 C -0.02 -0.33 9.79 23.87 0.23 -0.10 16 16 C 0.09 2.38 6.15 42.12 0.26 2.64 16 17 C 0.11 2.24 10.95 85.46 0.94 3.17 16 18 N -0.44 -11.28 10.45 -186.98 -1.95 -13.24 16 19 C 0.06 1.73 6.59 40.31 0.27 2.00 16 20 C -0.09 -1.94 9.98 22.33 0.22 -1.72 16 21 C -0.08 -1.51 9.95 22.07 0.22 -1.29 16 22 C -0.09 -2.23 9.95 22.04 0.22 -2.01 16 23 C -0.12 -3.89 9.99 22.38 0.22 -3.67 16 24 C 0.06 2.01 6.59 40.45 0.27 2.28 16 25 N -0.43 -15.87 6.65 -177.65 -1.18 -17.05 16 26 C 0.05 2.07 8.35 72.27 0.60 2.68 16 27 O -0.39 -17.59 12.40 -148.98 -1.85 -19.43 16 28 C 0.03 1.08 6.86 72.27 0.50 1.57 16 29 H 0.27 15.70 8.31 -92.71 -0.77 14.93 16 30 H 0.05 2.57 4.71 -2.39 -0.01 2.56 16 31 H 0.07 2.53 8.01 -2.39 -0.02 2.51 16 32 H 0.19 3.40 8.06 -2.91 -0.02 3.37 16 33 H 0.23 1.04 8.06 -2.91 -0.02 1.02 16 34 H 0.23 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.17 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.18 1.62 8.06 -2.91 -0.02 1.60 16 37 H 0.16 2.90 8.06 -2.91 -0.02 2.87 16 38 H 0.11 4.11 8.06 -2.91 -0.02 4.09 16 39 H 0.10 3.19 8.04 -2.39 -0.02 3.17 16 40 H 0.08 3.38 8.09 -2.39 -0.02 3.36 16 41 H 0.07 3.29 4.65 -2.38 -0.01 3.28 16 42 H 0.10 3.47 8.10 -2.39 -0.02 3.45 16 Total: -1.00 -86.71 354.84 3.06 -83.65 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: 0.76 Total: 19.41 kcal Atomic # 6 Polarization: -7.85 SS G_CDS: 5.62 Total: -2.23 kcal Atomic # 7 Polarization: -85.89 SS G_CDS: -2.84 Total: -88.73 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -2.14 Total: -57.11 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 1.66 Total: 45.01 kcal Total: -86.71 3.06 -83.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001123166065.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.766 kcal (2) G-P(sol) polarization free energy of solvation -86.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds