Wall clock time and date at job start Sat Apr 11 2020 05:56:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99985 * 2 1 4 4 H 1.48502 * 109.46841 * 264.66622 * 3 2 1 5 5 H 1.48502 * 109.47107 * 24.66580 * 3 2 1 6 6 H 1.48500 * 109.47238 * 144.66926 * 3 2 1 7 7 C 1.37876 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99927 * 4.98459 * 7 2 1 9 9 C 1.50700 * 120.00133 * 184.98602 * 7 2 1 10 10 H 1.08994 * 109.47363 * 25.10028 * 9 7 2 11 11 C 1.50704 * 109.47155 * 145.10455 * 9 7 2 12 12 O 1.21279 * 120.00431 * 120.00011 * 11 9 7 13 13 N 1.34777 * 119.99806 * 299.99620 * 11 9 7 14 14 N 1.40093 * 120.00135 * 180.02562 * 13 11 9 15 15 C 1.34777 * 120.00135 * 179.97438 * 14 13 11 16 16 O 1.21589 * 120.00061 * 0.02562 * 15 14 13 17 17 C 1.47535 * 120.00181 * 179.97438 * 15 14 13 18 18 C 1.39706 * 120.19161 * 0.27577 * 17 15 14 19 19 C 1.37789 * 119.90578 * 180.29427 * 18 17 15 20 20 C 1.38547 * 120.30487 * 359.70276 * 19 18 17 21 21 C 1.38055 * 120.38365 * 0.02562 * 20 19 18 22 22 C 1.38713 * 120.09190 * 359.97438 * 21 20 19 23 23 O 1.35646 * 120.15201 * 180.02562 * 22 21 20 24 24 C 1.50702 * 109.47190 * 265.09901 * 9 7 2 25 25 C 1.38235 * 120.00105 * 305.02415 * 24 9 7 26 26 C 1.38236 * 120.00172 * 179.78576 * 25 24 9 27 27 C 1.38237 * 119.99949 * 0.44137 * 26 25 24 28 28 C 1.38239 * 119.99534 * 359.81150 * 27 26 25 29 29 C 1.38229 * 120.00396 * 359.97438 * 28 27 26 30 30 H 0.96992 * 120.00148 * 0.02562 * 1 2 3 31 31 H 0.97008 * 119.99776 * 0.02562 * 13 11 9 32 32 H 0.97000 * 120.00128 * 359.97438 * 14 13 11 33 33 H 1.08004 * 120.04755 * 0.02562 * 18 17 15 34 34 H 1.08001 * 119.84858 * 179.72410 * 19 18 17 35 35 H 1.07992 * 119.81050 * 180.02562 * 20 19 18 36 36 H 1.08006 * 119.95708 * 179.97438 * 21 20 19 37 37 H 0.96703 * 113.99721 * 89.99959 * 23 22 21 38 38 H 1.08005 * 120.00208 * 359.97438 * 25 24 9 39 39 H 1.08002 * 120.00173 * 180.27362 * 26 25 24 40 40 H 1.07993 * 120.00345 * 179.83630 * 27 26 25 41 41 H 1.08000 * 119.99526 * 179.97438 * 28 27 26 42 42 H 1.07996 * 120.00309 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6093 1.9813 -1.3941 5 1 1.3948 2.6826 0.5843 6 1 3.4858 1.4754 0.8096 7 6 2.0046 -1.1940 0.0005 8 1 1.4676 -2.1277 -0.0803 9 6 3.5073 -1.1964 0.1140 10 1 3.8353 -0.2860 0.6156 11 6 3.9490 -2.3965 0.9114 12 8 4.6847 -3.2202 0.4104 13 7 3.5264 -2.5542 2.1815 14 7 3.9373 -3.6695 2.9230 15 6 3.5152 -3.8270 4.1932 16 8 2.7772 -3.0014 4.6954 17 6 3.9475 -5.0018 4.9740 18 6 4.7991 -5.9505 4.4026 19 6 5.1943 -7.0486 5.1351 20 6 4.7560 -7.2138 6.4390 21 6 3.9188 -6.2810 7.0177 22 6 3.5108 -5.1695 6.2951 23 8 2.6886 -4.2520 6.8626 24 6 4.1150 -1.2576 -1.2638 25 6 3.7603 -2.2738 -2.1311 26 6 4.3143 -2.3274 -3.3965 27 6 5.2300 -1.3700 -3.7912 28 6 5.5886 -0.3567 -2.9219 29 6 5.0312 -0.3006 -1.6582 30 1 -0.4850 0.8400 -0.0004 31 1 2.9376 -1.8955 2.5821 32 1 4.5258 -4.3284 2.5223 33 1 5.1437 -5.8256 3.3866 34 1 5.8491 -7.7837 4.6909 35 1 5.0711 -8.0772 7.0059 36 1 3.5809 -6.4169 8.0345 37 1 3.1528 -3.5376 7.3202 38 1 3.0479 -3.0242 -1.8214 39 1 4.0339 -3.1189 -4.0757 40 1 5.6649 -1.4133 -4.7787 41 1 6.3043 0.3911 -3.2301 42 1 5.3111 0.4912 -0.9792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160373107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:23 Heat of formation + Delta-G solvation = -23.583284 kcal Electronic energy + Delta-G solvation = -28371.452308 eV Core-core repulsion = 24283.110133 eV Total energy + Delta-G solvation = -4088.342176 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.61935 -39.57042 -38.58731 -37.70872 -36.86776 -34.83110 -33.76982 -32.21111 -31.58281 -30.22367 -30.18462 -29.86979 -27.63276 -24.33127 -23.58976 -22.75344 -21.93013 -21.43043 -21.08255 -19.80998 -18.55602 -17.69990 -17.39319 -17.18538 -16.17773 -16.10394 -15.75298 -15.64193 -15.09072 -14.94328 -14.59621 -14.51175 -14.26882 -14.06310 -13.67696 -13.57607 -13.12951 -12.73867 -12.68734 -12.61063 -12.45021 -12.18513 -11.97850 -11.97157 -11.27908 -11.01915 -10.91666 -10.86856 -10.52053 -10.32900 -9.98194 -9.90169 -9.63865 -9.36953 -9.21383 -8.97142 -8.79732 -8.19213 -7.91098 -7.87289 -6.33599 -4.40213 0.54066 0.95001 2.00842 2.13668 2.33149 2.71245 3.13180 3.21854 3.25458 3.32714 3.58099 3.98692 4.18986 4.23386 4.49942 4.52434 4.65002 4.80597 4.96222 5.04064 5.07945 5.39981 5.50463 5.52756 5.55281 5.66388 5.83729 5.87762 5.88334 5.99336 6.07721 6.20049 6.25360 6.38211 6.40464 6.66171 6.79215 7.06515 7.07322 7.12736 7.19251 7.20775 7.51980 7.53884 7.73986 8.01961 8.15438 8.22334 8.65873 8.94795 9.22392 10.77060 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.003134 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.656231 B = 8932.486545 C =10423.122343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.089 3.911 3 Si 0.866 3.134 4 H -0.265 1.265 5 H -0.283 1.283 6 H -0.261 1.261 7 C -0.520 4.520 8 H 0.084 0.916 9 C 0.032 3.968 10 H 0.079 0.921 11 C 0.538 3.462 12 O -0.562 6.562 13 N -0.517 5.517 14 N -0.519 5.519 15 C 0.551 3.449 16 O -0.520 6.520 17 C -0.153 4.153 18 C -0.071 4.071 19 C -0.137 4.137 20 C -0.079 4.079 21 C -0.157 4.157 22 C 0.172 3.828 23 O -0.476 6.476 24 C -0.029 4.029 25 C -0.072 4.072 26 C -0.129 4.129 27 C -0.141 4.141 28 C -0.128 4.128 29 C -0.135 4.135 30 H 0.271 0.729 31 H 0.438 0.562 32 H 0.425 0.575 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.131 0.869 36 H 0.136 0.864 37 H 0.396 0.604 38 H 0.118 0.882 39 H 0.111 0.889 40 H 0.109 0.891 41 H 0.110 0.890 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.011 -9.666 9.286 17.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.117 4.117 3 Si 0.693 3.307 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.186 1.186 7 C -0.557 4.557 8 H 0.103 0.897 9 C 0.009 3.991 10 H 0.097 0.903 11 C 0.327 3.673 12 O -0.439 6.439 13 N -0.267 5.267 14 N -0.266 5.266 15 C 0.338 3.662 16 O -0.395 6.395 17 C -0.158 4.158 18 C -0.090 4.090 19 C -0.155 4.155 20 C -0.097 4.097 21 C -0.176 4.176 22 C 0.125 3.875 23 O -0.287 6.287 24 C -0.030 4.030 25 C -0.090 4.090 26 C -0.147 4.147 27 C -0.159 4.159 28 C -0.146 4.146 29 C -0.153 4.153 30 H 0.081 0.919 31 H 0.282 0.718 32 H 0.267 0.733 33 H 0.150 0.850 34 H 0.150 0.850 35 H 0.149 0.851 36 H 0.154 0.846 37 H 0.255 0.745 38 H 0.136 0.864 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.128 0.872 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 11.341 -9.849 9.057 17.540 hybrid contribution 0.587 1.154 0.021 1.295 sum 11.928 -8.695 9.078 17.329 Atomic orbital electron populations 1.69851 1.06222 1.27719 1.47278 1.24970 0.94733 0.98818 0.93223 0.87015 0.80226 0.83778 0.79711 1.19023 1.20893 1.18618 1.20526 0.85898 0.95662 1.53656 0.89749 1.18478 0.98664 0.92751 0.89166 0.90337 1.21684 0.78044 0.88810 0.78779 1.90604 1.37872 1.45767 1.69672 1.45217 1.52235 1.17880 1.11323 1.44679 1.50714 1.20355 1.10806 1.18052 0.81543 0.86343 0.80294 1.90854 1.35487 1.43633 1.69563 1.20216 1.02677 0.97097 0.95828 1.21339 0.94728 0.93113 0.99831 1.21114 1.01531 0.98170 0.94686 1.21240 0.95346 0.98131 0.94990 1.21462 0.99692 0.95377 1.01049 1.18467 0.88724 0.90568 0.89746 1.84769 1.32753 1.38118 1.73061 1.19985 0.92624 0.93644 0.96788 1.20853 0.97913 0.97617 0.92635 1.21037 0.98120 0.99012 0.96527 1.20883 0.99715 0.96229 0.99103 1.20889 1.00685 0.98695 0.94353 1.20974 0.97955 0.99682 0.96680 0.91907 0.71799 0.73312 0.85016 0.84963 0.85089 0.84615 0.74546 0.86442 0.87044 0.87251 0.87161 0.87258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.89 13.96 55.43 0.77 -24.11 16 2 C 0.09 2.34 5.47 -17.82 -0.10 2.24 16 3 Si 0.87 19.79 27.18 -169.99 -4.62 15.17 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 6 H -0.26 -5.51 6.06 56.52 0.34 -5.17 16 7 C -0.52 -13.30 8.06 -34.44 -0.28 -13.57 16 8 H 0.08 2.39 8.06 -52.48 -0.42 1.96 16 9 C 0.03 0.72 1.89 -94.07 -0.18 0.54 16 10 H 0.08 1.71 4.89 -51.93 -0.25 1.45 16 11 C 0.54 11.40 7.15 -10.98 -0.08 11.32 16 12 O -0.56 -12.38 15.21 5.56 0.08 -12.29 16 13 N -0.52 -10.07 6.16 31.22 0.19 -9.88 16 14 N -0.52 -8.60 6.21 30.46 0.19 -8.41 16 15 C 0.55 8.99 7.88 -12.47 -0.10 8.90 16 16 O -0.52 -10.09 15.00 -16.59 -0.25 -10.34 16 17 C -0.15 -1.96 5.89 -104.84 -0.62 -2.58 16 18 C -0.07 -0.71 9.54 -39.20 -0.37 -1.09 16 19 C -0.14 -1.08 10.02 -39.63 -0.40 -1.48 16 20 C -0.08 -0.58 10.03 -39.53 -0.40 -0.98 16 21 C -0.16 -1.39 9.98 -39.47 -0.39 -1.78 16 22 C 0.17 2.03 6.72 -38.69 -0.26 1.77 16 23 O -0.48 -6.01 11.58 -40.52 -0.47 -6.48 16 24 C -0.03 -0.63 4.09 -104.62 -0.43 -1.06 16 25 C -0.07 -1.52 8.25 -39.58 -0.33 -1.85 16 26 C -0.13 -2.35 10.05 -39.58 -0.40 -2.75 16 27 C -0.14 -2.38 10.05 -39.58 -0.40 -2.78 16 28 C -0.13 -2.23 10.05 -39.58 -0.40 -2.63 16 29 C -0.13 -2.65 9.46 -39.59 -0.37 -3.03 16 30 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 31 H 0.44 8.84 7.89 -182.60 -1.44 7.40 16 32 H 0.42 6.21 6.03 -182.60 -1.10 5.11 16 33 H 0.13 1.15 6.41 -52.48 -0.34 0.81 16 34 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.14 0.93 8.06 -52.48 -0.42 0.50 16 37 H 0.40 3.39 9.06 45.56 0.41 3.80 16 38 H 0.12 2.56 7.93 -52.48 -0.42 2.15 16 39 H 0.11 1.73 8.06 -52.49 -0.42 1.30 16 40 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 41 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 42 H 0.11 1.98 7.95 -52.49 -0.42 1.57 16 LS Contribution 365.01 15.07 5.50 5.50 Total: -1.00 -33.13 365.01 -9.79 -42.92 By element: Atomic # 1 Polarization: 24.42 SS G_CDS: -5.71 Total: 18.72 kcal Atomic # 6 Polarization: -5.30 SS G_CDS: -5.49 Total: -10.79 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 1.15 Total: -42.40 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.63 Total: -29.12 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.62 Total: 15.17 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.13 -9.79 -42.92 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160373107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.340 kcal (2) G-P(sol) polarization free energy of solvation -33.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds