Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99985 * 2 1 4 4 H 1.48502 * 109.46841 * 264.66622 * 3 2 1 5 5 H 1.48502 * 109.47107 * 24.66580 * 3 2 1 6 6 H 1.48500 * 109.47238 * 144.66926 * 3 2 1 7 7 C 1.37876 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99927 * 4.98459 * 7 2 1 9 9 C 1.50700 * 120.00133 * 184.98602 * 7 2 1 10 10 H 1.08994 * 109.47363 * 25.10028 * 9 7 2 11 11 C 1.50704 * 109.47155 * 145.10455 * 9 7 2 12 12 O 1.21279 * 120.00431 * 120.00011 * 11 9 7 13 13 N 1.34777 * 119.99806 * 299.99620 * 11 9 7 14 14 N 1.40093 * 120.00135 * 180.02562 * 13 11 9 15 15 C 1.34777 * 120.00135 * 179.97438 * 14 13 11 16 16 O 1.21589 * 120.00061 * 0.02562 * 15 14 13 17 17 C 1.47535 * 120.00181 * 179.97438 * 15 14 13 18 18 C 1.39706 * 120.19161 * 0.27577 * 17 15 14 19 19 C 1.37789 * 119.90578 * 180.29427 * 18 17 15 20 20 C 1.38547 * 120.30487 * 359.70276 * 19 18 17 21 21 C 1.38055 * 120.38365 * 0.02562 * 20 19 18 22 22 C 1.38713 * 120.09190 * 359.97438 * 21 20 19 23 23 O 1.35646 * 120.15201 * 180.02562 * 22 21 20 24 24 C 1.50702 * 109.47190 * 265.09901 * 9 7 2 25 25 C 1.38235 * 120.00105 * 305.02415 * 24 9 7 26 26 C 1.38236 * 120.00172 * 179.78576 * 25 24 9 27 27 C 1.38237 * 119.99949 * 0.44137 * 26 25 24 28 28 C 1.38239 * 119.99534 * 359.81150 * 27 26 25 29 29 C 1.38229 * 120.00396 * 359.97438 * 28 27 26 30 30 H 0.96992 * 120.00148 * 0.02562 * 1 2 3 31 31 H 0.97008 * 119.99776 * 0.02562 * 13 11 9 32 32 H 0.97000 * 120.00128 * 359.97438 * 14 13 11 33 33 H 1.08004 * 120.04755 * 0.02562 * 18 17 15 34 34 H 1.08001 * 119.84858 * 179.72410 * 19 18 17 35 35 H 1.07992 * 119.81050 * 180.02562 * 20 19 18 36 36 H 1.08006 * 119.95708 * 179.97438 * 21 20 19 37 37 H 0.96703 * 113.99721 * 89.99959 * 23 22 21 38 38 H 1.08005 * 120.00208 * 359.97438 * 25 24 9 39 39 H 1.08002 * 120.00173 * 180.27362 * 26 25 24 40 40 H 1.07993 * 120.00345 * 179.83630 * 27 26 25 41 41 H 1.08000 * 119.99526 * 179.97438 * 28 27 26 42 42 H 1.07996 * 120.00309 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.6093 1.9813 -1.3941 5 1 1.3948 2.6826 0.5843 6 1 3.4858 1.4754 0.8096 7 6 2.0046 -1.1940 0.0005 8 1 1.4676 -2.1277 -0.0803 9 6 3.5073 -1.1964 0.1140 10 1 3.8353 -0.2860 0.6156 11 6 3.9490 -2.3965 0.9114 12 8 4.6847 -3.2202 0.4104 13 7 3.5264 -2.5542 2.1815 14 7 3.9373 -3.6695 2.9230 15 6 3.5152 -3.8270 4.1932 16 8 2.7772 -3.0014 4.6954 17 6 3.9475 -5.0018 4.9740 18 6 4.7991 -5.9505 4.4026 19 6 5.1943 -7.0486 5.1351 20 6 4.7560 -7.2138 6.4390 21 6 3.9188 -6.2810 7.0177 22 6 3.5108 -5.1695 6.2951 23 8 2.6886 -4.2520 6.8626 24 6 4.1150 -1.2576 -1.2638 25 6 3.7603 -2.2738 -2.1311 26 6 4.3143 -2.3274 -3.3965 27 6 5.2300 -1.3700 -3.7912 28 6 5.5886 -0.3567 -2.9219 29 6 5.0312 -0.3006 -1.6582 30 1 -0.4850 0.8400 -0.0004 31 1 2.9376 -1.8955 2.5821 32 1 4.5258 -4.3284 2.5223 33 1 5.1437 -5.8256 3.3866 34 1 5.8491 -7.7837 4.6909 35 1 5.0711 -8.0772 7.0059 36 1 3.5809 -6.4169 8.0345 37 1 3.1528 -3.5376 7.3202 38 1 3.0479 -3.0242 -1.8214 39 1 4.0339 -3.1189 -4.0757 40 1 5.6649 -1.4133 -4.7787 41 1 6.3043 0.3911 -3.2301 42 1 5.3111 0.4912 -0.9792 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160373107.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -46.325326 kcal Electronic energy + Delta-G solvation = -28372.438477 eV Core-core repulsion = 24283.110133 eV Total energy + Delta-G solvation = -4089.328345 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.126 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.80134 -40.98094 -39.85170 -39.14588 -37.71523 -36.32709 -35.62173 -33.57971 -33.15410 -31.63351 -31.30527 -30.76816 -29.27600 -25.80948 -24.95376 -23.61661 -23.38003 -22.85468 -22.36632 -21.22580 -19.59083 -19.18320 -18.91884 -18.74510 -17.57643 -17.47845 -16.78008 -16.67904 -16.49319 -16.14215 -16.02734 -15.94476 -15.58019 -15.30550 -15.10057 -14.90773 -14.63411 -14.44279 -14.15054 -13.84042 -13.51633 -13.36730 -13.19392 -13.05189 -12.73649 -12.68386 -12.42218 -12.05385 -12.00780 -11.85451 -11.67455 -11.48803 -11.18445 -10.99104 -10.72395 -10.15537 -9.74873 -9.64857 -9.41998 -9.37774 -8.38815 -6.49246 -0.31292 0.23875 0.54934 0.67226 0.90639 1.30378 1.37705 1.42429 1.47158 1.83782 2.26942 2.67424 2.89539 2.97682 3.15117 3.21252 3.55959 3.78886 4.04331 4.07727 4.16542 4.18046 4.31654 4.32611 4.39148 4.39383 4.51989 4.67713 4.80827 4.85527 4.88944 5.12859 5.16634 5.28461 5.31140 5.33991 5.40493 5.57831 5.66918 5.71339 5.74264 5.78220 5.91403 6.14540 6.29275 6.47140 6.53838 6.77322 6.81791 7.16324 7.33805 8.75748 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013499 B = 0.003134 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2073.656231 B = 8932.486545 C =10423.122343 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.037 3.963 3 Si 0.923 3.077 4 H -0.260 1.260 5 H -0.284 1.284 6 H -0.232 1.232 7 C -0.511 4.511 8 H 0.038 0.962 9 C 0.035 3.965 10 H 0.086 0.914 11 C 0.537 3.463 12 O -0.572 6.572 13 N -0.520 5.520 14 N -0.515 5.515 15 C 0.550 3.450 16 O -0.560 6.560 17 C -0.183 4.183 18 C -0.075 4.075 19 C -0.132 4.132 20 C -0.062 4.062 21 C -0.156 4.156 22 C 0.152 3.848 23 O -0.499 6.499 24 C -0.057 4.057 25 C -0.102 4.102 26 C -0.132 4.132 27 C -0.133 4.133 28 C -0.124 4.124 29 C -0.149 4.149 30 H 0.272 0.728 31 H 0.433 0.567 32 H 0.433 0.567 33 H 0.139 0.861 34 H 0.165 0.835 35 H 0.171 0.829 36 H 0.157 0.843 37 H 0.408 0.592 38 H 0.090 0.910 39 H 0.135 0.865 40 H 0.151 0.849 41 H 0.150 0.850 42 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.525 -10.478 9.091 20.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.565 5.565 2 C -0.164 4.164 3 Si 0.746 3.254 4 H -0.185 1.185 5 H -0.210 1.210 6 H -0.156 1.156 7 C -0.548 4.548 8 H 0.057 0.943 9 C 0.013 3.987 10 H 0.104 0.896 11 C 0.326 3.674 12 O -0.450 6.450 13 N -0.267 5.267 14 N -0.264 5.264 15 C 0.340 3.660 16 O -0.438 6.438 17 C -0.188 4.188 18 C -0.094 4.094 19 C -0.149 4.149 20 C -0.080 4.080 21 C -0.174 4.174 22 C 0.106 3.894 23 O -0.312 6.312 24 C -0.058 4.058 25 C -0.120 4.120 26 C -0.150 4.150 27 C -0.151 4.151 28 C -0.141 4.141 29 C -0.167 4.167 30 H 0.081 0.919 31 H 0.276 0.724 32 H 0.277 0.723 33 H 0.156 0.844 34 H 0.183 0.817 35 H 0.188 0.812 36 H 0.175 0.825 37 H 0.267 0.733 38 H 0.108 0.892 39 H 0.153 0.847 40 H 0.169 0.831 41 H 0.167 0.833 42 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 14.896 -10.691 8.871 20.369 hybrid contribution -0.458 1.200 0.101 1.288 sum 14.438 -9.492 8.971 19.468 Atomic orbital electron populations 1.69992 1.08138 1.28641 1.49765 1.25748 0.95332 1.02436 0.92893 0.86100 0.79997 0.79052 0.80284 1.18505 1.20956 1.15606 1.20467 0.87885 0.93829 1.52639 0.94341 1.18393 0.96272 0.93527 0.90556 0.89625 1.21447 0.78168 0.88586 0.79179 1.90574 1.38543 1.45930 1.69982 1.45095 1.51601 1.18770 1.11242 1.44831 1.51050 1.19602 1.10867 1.18796 0.80488 0.86903 0.79838 1.90816 1.37352 1.45355 1.70274 1.20107 1.05506 0.96892 0.96282 1.21510 0.94096 0.93307 1.00457 1.21526 1.01070 0.97544 0.94780 1.21745 0.93187 0.98247 0.94782 1.21724 0.99548 0.94321 1.01854 1.18815 0.89293 0.91529 0.89761 1.84720 1.34087 1.39019 1.73383 1.19948 0.94607 0.95215 0.96065 1.20835 0.98900 0.97765 0.94540 1.21355 0.97941 1.00178 0.95534 1.21374 0.98234 0.94810 1.00682 1.21370 1.00321 0.99298 0.93156 1.21245 0.97786 0.99423 0.98276 0.91907 0.72416 0.72297 0.84373 0.81726 0.81153 0.82493 0.73256 0.89181 0.84694 0.83138 0.83273 0.85875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.49 13.96 21.45 0.30 -55.19 16 2 C 0.04 2.03 5.47 84.65 0.46 2.49 16 3 Si 0.92 41.07 27.18 68.60 1.86 42.94 16 4 H -0.26 -11.36 7.11 99.48 0.71 -10.66 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.23 -9.17 6.06 99.48 0.60 -8.57 16 7 C -0.51 -27.65 8.06 25.60 0.21 -27.44 16 8 H 0.04 2.37 8.06 -2.91 -0.02 2.35 16 9 C 0.04 1.62 1.89 -13.03 -0.02 1.60 16 10 H 0.09 3.73 4.89 -2.39 -0.01 3.72 16 11 C 0.54 23.75 7.15 87.66 0.63 24.38 16 12 O -0.57 -25.95 15.21 -3.03 -0.05 -25.99 16 13 N -0.52 -21.40 6.16 -173.53 -1.07 -22.47 16 14 N -0.52 -17.94 6.21 -175.81 -1.09 -19.03 16 15 C 0.55 18.96 7.88 86.70 0.68 19.64 16 16 O -0.56 -23.19 15.00 16.92 0.25 -22.94 16 17 C -0.18 -4.76 5.89 -20.01 -0.12 -4.88 16 18 C -0.07 -1.42 9.54 22.52 0.21 -1.20 16 19 C -0.13 -1.64 10.02 22.24 0.22 -1.41 16 20 C -0.06 -0.67 10.03 22.30 0.22 -0.44 16 21 C -0.16 -2.41 9.98 22.34 0.22 -2.18 16 22 C 0.15 3.60 6.72 22.85 0.15 3.75 16 23 O -0.50 -13.15 11.58 -68.69 -0.80 -13.95 16 24 C -0.06 -2.49 4.09 -19.86 -0.08 -2.57 16 25 C -0.10 -4.40 8.25 22.27 0.18 -4.22 16 26 C -0.13 -4.62 10.05 22.27 0.22 -4.40 16 27 C -0.13 -3.99 10.05 22.27 0.22 -3.77 16 28 C -0.12 -3.83 10.05 22.27 0.22 -3.60 16 29 C -0.15 -5.56 9.46 22.27 0.21 -5.35 16 30 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 31 H 0.43 18.71 7.89 -213.31 -1.68 17.02 16 32 H 0.43 13.15 6.03 -213.33 -1.29 11.86 16 33 H 0.14 2.32 6.41 -2.91 -0.02 2.30 16 34 H 0.17 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.17 0.57 8.06 -2.91 -0.02 0.54 16 36 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 37 H 0.41 7.57 9.06 -74.05 -0.67 6.90 16 38 H 0.09 4.24 7.93 -2.91 -0.02 4.21 16 39 H 0.14 3.94 8.06 -2.91 -0.02 3.91 16 40 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 41 H 0.15 3.44 8.06 -2.91 -0.02 3.42 16 42 H 0.12 4.14 7.95 -2.91 -0.02 4.12 16 Total: -1.00 -77.25 365.01 0.64 -76.60 By element: Atomic # 1 Polarization: 52.28 SS G_CDS: -2.63 Total: 49.64 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: 3.86 Total: -9.61 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -1.86 Total: -96.70 kcal Atomic # 8 Polarization: -62.29 SS G_CDS: -0.59 Total: -62.88 kcal Atomic # 14 Polarization: 41.07 SS G_CDS: 1.86 Total: 42.94 kcal Total: -77.25 0.64 -76.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160373107.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.278 kcal (2) G-P(sol) polarization free energy of solvation -77.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds